Rorug04G0195400

Protein FAR1-RELATED SEQUENCE 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012608
Physical Location & Seq
Forward (+)
34030527 .. 34030841
315 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0195400.1

Sequence Viewer

Length: 315 bp
ATGGAGGACATTGACGTGATGACGCGACTGACATCTTTTCTAGTTCTCGGGGAGGGGAAGAATGCTGTGGATCTAAGGCCTTCCAAAATTAAGGGTCTTCAGCTGTCAGAAGTCTATATGGTTGGCAAATTACTCACTACTCGGAAGTATAAGTGGAGATCATTTTTGAAGATGTTTCAATCTGCTTGGAACATCAATGGAGATTTTAAGGTTGAGCCTGCCGAAGGGGATCAGGTCAGCTTCACCTTCTTTGATCTGGTTGACAGAACCCCGGTGTGGCGCTGTGGTCCGTGGGCTTCAACCGTGCCCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

104

Amino Acids

11.96

Weight (kDa)

8.82

Isoelectric Point (pI)

36.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 25
AclWI GGATC 2 cut(s) 78, 237
AcuI CTGAAG 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 224, 276
AgsI TTSAA 3 cut(s) 169, 179, 300
AjiI CACGTC 1 cut(s) 16
AluBI AGCT 2 cut(s) 103, 240
AluI AGCT 2 cut(s) 103, 240
AlwI GGATC 2 cut(s) 78, 237
Ama87I CYCGRG 1 cut(s) 47
AoxI GGCC 1 cut(s) 77
AspLEI GCGC 1 cut(s) 282
AspS9I GGNCC 1 cut(s) 287
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 235
AvaI CYCGRG 1 cut(s) 47
AvaII GGWCC 1 cut(s) 287
BaeGI GKGCMC 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 89
BcnI CCSGG 1 cut(s) 272
BfaI CTAG 1 cut(s) 41
BfoI RGCGCY 1 cut(s) 283
Bme1390I CCNGG 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 287
BmeT110I CYCGRG 1 cut(s) 47
BmgBI CACGTC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 287
BmrFI CCNGG 1 cut(s) 272
BpiI GAAGAC 1 cut(s) 89
BpuMI CCSGG 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 270, 290
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 276
BseDI CCNNGG 2 cut(s) 270, 290
BseLI CCNNNNNNNGG 2 cut(s) 224, 276
BseSI GKGCMC 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 25
BshFI GGCC 1 cut(s) 79
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 1 cut(s) 272
BslI CCNNNNNNNGG 2 cut(s) 224, 276
BsmI GAATGC 1 cut(s) 67
BsnI GGCC 1 cut(s) 79
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 4 cut(s) 70, 158, 229, 253
BspANI GGCC 1 cut(s) 79
BspFNI CGCG 1 cut(s) 25
BspPI GGATC 2 cut(s) 78, 237
BssECI CCNNGG 2 cut(s) 270, 290
BssMI GATC 4 cut(s) 70, 158, 229, 253
Bst4CI ACNGT 1 cut(s) 304
BstC8I GCNNGC 1 cut(s) 219
BstDEI CTNAG 1 cut(s) 74
BstDSI CCRYGG 1 cut(s) 290
BstENI CCTNNNNNAGG 1 cut(s) 222
BstFNI CGCG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 283
BstHHI GCGC 1 cut(s) 282
BstKTI GATC 4 cut(s) 73, 161, 232, 256
BstMBI GATC 4 cut(s) 70, 158, 229, 253
BstSCI CCNGG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 309
BstUI CGCG 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 89
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 290
BtrI CACGTC 1 cut(s) 16
Cac8I GCNNGC 1 cut(s) 219
CfoI GCGC 1 cut(s) 282
Cfr13I GGNCC 1 cut(s) 287
CseI GACGC 1 cut(s) 31
CviJI RGCY 5 cut(s) 79, 103, 217, 240, 296
CviKI_1 RGCY 5 cut(s) 79, 103, 217, 240, 296
DdeI CTNAG 1 cut(s) 74
DpnI GATC 4 cut(s) 72, 160, 231, 255
DpnII GATC 4 cut(s) 70, 158, 229, 253
Eco147I AGGCCT 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 83
Eco88I CYCGRG 1 cut(s) 47
EcoNI CCTNNNNNAGG 1 cut(s) 222
FaiI YATR 3 cut(s) 117, 119, 150
FspBI CTAG 1 cut(s) 41
GlaI GCGC 1 cut(s) 281
HaeII RGCGCY 1 cut(s) 283
HaeIII GGCC 1 cut(s) 79
HapII CCGG 1 cut(s) 272
HgaI GACGC 1 cut(s) 31
HhaI GCGC 1 cut(s) 282
Hin6I GCGC 1 cut(s) 280
HinP1I GCGC 1 cut(s) 280
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HpaII CCGG 1 cut(s) 272
HphI GGTGA 1 cut(s) 235
Hpy166II GTNNAC 1 cut(s) 262
Hpy188I TCNGA 2 cut(s) 109, 144
Hpy8I GTNNAC 1 cut(s) 262
HpyAV CCTTC 3 cut(s) 90, 218, 256
HpyCH4III ACNGT 1 cut(s) 304
HpyCH4IV ACGT 1 cut(s) 15
HpyF3I CTNAG 1 cut(s) 74
HpySE526I ACGT 1 cut(s) 15
HspAI GCGC 1 cut(s) 280
Kzo9I GATC 4 cut(s) 70, 158, 229, 253
LpnPI CCDG 4 cut(s) 218, 231, 242, 285
MaeI CTAG 1 cut(s) 41
MaeII ACGT 1 cut(s) 15
MalI GATC 4 cut(s) 72, 160, 231, 255
MboI GATC 4 cut(s) 70, 158, 229, 253
MboII GAAGA 3 cut(s) 70, 89, 181
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 2 cut(s) 87, 128
MnlI CCTC 1 cut(s) 46
MseI TTAA 2 cut(s) 90, 207
MslI CAYNNNNRTG 1 cut(s) 14
MspA1I CMGCKG 1 cut(s) 103
MspI CCGG 1 cut(s) 272
MspR9I CCNGG 1 cut(s) 272
Mva1269I GAATGC 1 cut(s) 67
MvnI CGCG 1 cut(s) 25
NciI CCSGG 1 cut(s) 272
NdeII GATC 4 cut(s) 70, 158, 229, 253
PceI AGGCCT 1 cut(s) 79
PctI GAATGC 1 cut(s) 67
PspPI GGNCC 1 cut(s) 287
PsuI RGATCY 1 cut(s) 70
PvuII CAGCTG 1 cut(s) 103
RseI CAYNNNNRTG 1 cut(s) 14
SaqAI TTAA 2 cut(s) 90, 207
Sau3AI GATC 4 cut(s) 70, 158, 229, 253
Sau96I GGNCC 1 cut(s) 287
ScrFI CCNGG 1 cut(s) 272
SduI GDGCHC 1 cut(s) 309
SetI ASST 6 cut(s) 18, 105, 213, 237, 242, 248
SinI GGWCC 1 cut(s) 287
SmiMI CAYNNNNRTG 1 cut(s) 14
Sse9I AATT 2 cut(s) 87, 128
SseBI AGGCCT 1 cut(s) 79
SspMI CTAG 1 cut(s) 41
StuI AGGCCT 1 cut(s) 79
StyD4I CCNGG 1 cut(s) 270
TaaI ACNGT 1 cut(s) 304
TaiI ACGT 1 cut(s) 18
TasI AATT 2 cut(s) 87, 128
Tru1I TTAA 2 cut(s) 90, 207
Tru9I TTAA 2 cut(s) 90, 207
TspGWI ACGGA 1 cut(s) 279
VpaK11BI GGWCC 1 cut(s) 287
XagI CCTNNNNNAGG 1 cut(s) 222
XspI CTAG 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.