Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012608

Physical Location & Seq

Genomic Coordinates Forward (+)

33996337 .. 34003709

Gene Structure 7373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0195200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGTCGGCGATTTCAACAAGCCAACCTCGAAACCCCCGATGGGCTTCAACGAGAACGGCTCCGCCACCCTAAAGCTCATCTGCGACGGCAGCGCTGTGGCTCCAGAAGCACCACCCCAAAACCTCCTCCTCTTGGTCACCGAGCTCCAGGAGTCCCGGCCTCCAGTTCTTCACATCGTTAGCGGGTTATTCACTTATTCTTCTACTTCAATTGATCAGTTATTCGGCAGCTGGGCGGCTCGGCCATTTGAAATTGAAATTGAATCCGTCAGGTTAAAGAGGATAGCAGATGGGCTGCTACCACTATCAGATGATCTACGATATGGCAAGACCTTGGTCGAATATTGTATCAGAAATCAGAAGTGCTTCATAATCATAGATGTGGGAGCAAAGAGGAAAGCATGGATACCAGCAGGATTAAAGCCTTTTCTACTAGCATCTTCATCGGTTTCGCATCATTCAGTACTGAGGATCACACAACCCTTTGGAACTAAAACATTAAGAGGAGCATTGGCAATGCCATTGATGATCCAAGGAATGAAGAAGGATAATTGTAGGTCTCGTTTAGTTCGAACACAGTTTATCTCTATATTGCAACAATATCTGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

FAR1 MULE SWIM

Protein Analysis

203

Amino Acids

22.5

Weight (kDa)

9.51

Isoelectric Point (pI)

48.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012608)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19281
malus_domestica	MD13G1158700.v1.1
prunus_persica	Prupe.1G125700_v2.0.a1 Prupe.1G125700_v2.0.a1
pyrus_communis	pycom13g13560
rosa_chinensis	RchiOBHm_Chr4g0424281
rosa_roxburghii	Rroxscaffold_5G00366220
rosa_rugosa	Rorug04G0195000 Rorug04G0195000 Rorug04G0195000 Rorug04G0195100 Rorug04G0195200 Rorug04G0195300 Rorug04G0195400
rosa_samantha	Rh4AG252300 Rh4BG257800 Rh4CG268400 Rh4DG252100
rosa_wichuraiana	Rw4G021760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	63, 183, 236
AclWI	GGATC	2 cut(s)	479, 523
AcoI	YGGCCR	1 cut(s)	242
AfaI	GTAC	1 cut(s)	465
AfeI	AGCGCT	1 cut(s)	94
AfiI	CCNNNNNNNGG	2 cut(s)	41, 133
AgsI	TTSAA	6 cut(s)	16, 49, 210, 251, 257, 263
AjnI	CCWGG	1 cut(s)	147
AluBI	AGCT	3 cut(s)	76, 145, 231
AluI	AGCT	3 cut(s)	76, 145, 231
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	564
AlwI	GGATC	2 cut(s)	479, 523
Aor51HI	AGCGCT	1 cut(s)	94
AoxI	GGCC	2 cut(s)	158, 242
ApeKI	GCWGC	3 cut(s)	90, 228, 295
Asp700I	GAANNNNTTC	1 cut(s)	365
AspLEI	GCGC	1 cut(s)	95
AsuC2I	CCSGG	1 cut(s)	157
AsuHPI	GGTGA	1 cut(s)	130
AsuII	TTCGAA	1 cut(s)	571
BanII	GRGCYC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	3 cut(s)	102, 240, 282
BccI	CCATC	2 cut(s)	34, 284
BceAI	ACGGC	2 cut(s)	73, 103
BcgI	CGANNNNNNTGC	2 cut(s)	426, 460
BciT130I	CCWGG	1 cut(s)	149
BciVI	GTATCC	1 cut(s)	399
BclI	TGATCA	1 cut(s)	214
BcnI	CCSGG	1 cut(s)	157
BcoDI	GTCTC	1 cut(s)	564
BfaI	CTAG	1 cut(s)	434
BfoI	RGCGCY	1 cut(s)	96
BfuI	GTATCC	1 cut(s)	399
BisI	GCNGC	4 cut(s)	91, 229, 237, 296
BlsI	GCNGC	4 cut(s)	92, 230, 238, 297
BmcAI	AGTACT	1 cut(s)	465
Bme1390I	CCNGG	2 cut(s)	149, 157
BmiI	GGNNCC	2 cut(s)	61, 102
BmrFI	CCNGG	2 cut(s)	149, 157
BmsI	GCATC	2 cut(s)	446, 463
BoxI	GACNNNNGTC	1 cut(s)	335
BplI	GAGNNNNNCTC	2 cut(s)	44, 76
BpmI	CTGGAG	3 cut(s)	87, 131, 147
Bpu14I	TTCGAA	1 cut(s)	571
BpuMI	CCSGG	1 cut(s)	157
BsaI	GGTCTC	1 cut(s)	564
BsaJI	CCNNGG	2 cut(s)	333, 532
Bsc4I	CCNNNNNNNGG	2 cut(s)	41, 133
Bse1I	ACTGG	1 cut(s)	164
Bse3DI	GCAATG	1 cut(s)	522
BseBI	CCWGG	1 cut(s)	149
BseDI	CCNNGG	2 cut(s)	333, 532
BseLI	CCNNNNNNNGG	2 cut(s)	41, 133
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	458
BseNI	ACTGG	1 cut(s)	164
BseRI	GAGGAG	3 cut(s)	116, 119, 519
BseXI	GCAGC	3 cut(s)	102, 240, 282
BseYI	CCCAGC	1 cut(s)	231
BshFI	GGCC	2 cut(s)	160, 244
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	139
BslI	CCNNNNNNNGG	2 cut(s)	41, 133
BsmAI	GTCTC	1 cut(s)	564
BsmFI	GGGAC	1 cut(s)	139
BsnI	GGCC	2 cut(s)	160, 244
Bso31I	GGTCTC	1 cut(s)	564
Bsp119I	TTCGAA	1 cut(s)	571
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	4 cut(s)	214, 313, 471, 528
BspACI	CCGC	3 cut(s)	63, 183, 236
BspANI	GGCC	2 cut(s)	160, 244
BspCNI	CTCAG	1 cut(s)	459
BspLI	GGNNCC	2 cut(s)	61, 102
BspPI	GGATC	2 cut(s)	479, 523
BspT104I	TTCGAA	1 cut(s)	571
BspTNI	GGTCTC	1 cut(s)	564
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	164
BssECI	CCNNGG	2 cut(s)	333, 532
BssMI	GATC	4 cut(s)	214, 313, 471, 528
BssT1I	CCWWGG	2 cut(s)	333, 532
Bst2UI	CCWGG	1 cut(s)	149
Bst4CI	ACNGT	1 cut(s)	579
BstBI	TTCGAA	1 cut(s)	571
BstDEI	CTNAG	1 cut(s)	467
BstEII	GGTNACC	1 cut(s)	136
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	4 cut(s)	217, 316, 474, 531
BstMAI	GTCTC	1 cut(s)	564
BstMBI	GATC	4 cut(s)	214, 313, 471, 528
BstMWI	GCNNNNNNNGC	2 cut(s)	90, 107
BstNI	CCWGG	1 cut(s)	149
BstPAI	GACNNNNGTC	1 cut(s)	335
BstPI	GGTNACC	1 cut(s)	136
BstSCI	CCNGG	2 cut(s)	147, 155
BstV1I	GCAGC	3 cut(s)	102, 240, 282
BsuI	GTATCC	1 cut(s)	399
BsuRI	GGCC	2 cut(s)	160, 244
CfoI	GCGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	464
CviAII	CATG	1 cut(s)	402
CviQI	GTAC	1 cut(s)	464
DdeI	CTNAG	1 cut(s)	467
DpnI	GATC	4 cut(s)	216, 315, 473, 530
DpnII	GATC	4 cut(s)	214, 313, 471, 528
EaeI	YGGCCR	1 cut(s)	242
EciI	GGCGGA	1 cut(s)	52
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	2 cut(s)	333, 532
Eco24I	GRGCYC	1 cut(s)	147
Eco31I	GGTCTC	1 cut(s)	564
Eco47III	AGCGCT	1 cut(s)	94
Eco53kI	GAGCTC	1 cut(s)	145
Eco91I	GGTNACC	1 cut(s)	136
EcoICRI	GAGCTC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	136
EcoRII	CCWGG	1 cut(s)	147
EcoT14I	CCWWGG	2 cut(s)	333, 532
EcoT38I	GRGCYC	1 cut(s)	147
ErhI	CCWWGG	2 cut(s)	333, 532
FaeI	CATG	1 cut(s)	405
FaiI	YATR	5 cut(s)	324, 371, 377, 403, 590
FaqI	GGGAC	1 cut(s)	139
FatI	CATG	1 cut(s)	401
FauI	CCCGC	1 cut(s)	176
FbaI	TGATCA	1 cut(s)	214
Fnu4HI	GCNGC	4 cut(s)	91, 229, 237, 296
FriOI	GRGCYC	1 cut(s)	147
Fsp4HI	GCNGC	4 cut(s)	91, 229, 237, 296
FspBI	CTAG	1 cut(s)	434
GlaI	GCGC	1 cut(s)	94
GluI	GCNGC	4 cut(s)	91, 229, 237, 296
GsaI	CCCAGC	1 cut(s)	235
GsuI	CTGGAG	3 cut(s)	87, 131, 147
HaeII	RGCGCY	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	160, 244
HapII	CCGG	1 cut(s)	157
HhaI	GCGC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	405
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	2 cut(s)	152, 263
HpaII	CCGG	1 cut(s)	157
HphI	GGTGA	1 cut(s)	130
Hpy188I	TCNGA	4 cut(s)	310, 353, 360, 606
Hpy188III	TCNNGA	1 cut(s)	104
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	1 cut(s)	538
HpyCH4III	ACNGT	1 cut(s)	579
HpyCH4V	TGCA	1 cut(s)	595
HpyF10VI	GCNNNNNNNGC	2 cut(s)	90, 107
HpyF3I	CTNAG	1 cut(s)	467
Hsp92II	CATG	1 cut(s)	405
HspAI	GCGC	1 cut(s)	93
Ksp22I	TGATCA	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	214, 313, 471, 528
LmnI	GCTCC	5 cut(s)	65, 106, 150, 386, 506
LpnPI	CCDG	9 cut(s)	117, 134, 161, 170, 177, 217, 256, 399, 423
Lsp1109I	GCAGC	3 cut(s)	102, 240, 282
LweI	GCATC	2 cut(s)	446, 463
MaeI	CTAG	1 cut(s)	434
MaeIII	GTNAC	1 cut(s)	136
MalI	GATC	4 cut(s)	216, 315, 473, 530
MboI	GATC	4 cut(s)	214, 313, 471, 528
MboII	GAAGA	4 cut(s)	161, 192, 432, 553
MfeI	CAATTG	1 cut(s)	210
MhlI	GDGCHC	1 cut(s)	147
MluCI	AATT	4 cut(s)	210, 252, 258, 550
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	9 cut(s)	37, 134, 137, 140, 171, 273, 387, 462, 497
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	3 cut(s)	275, 419, 500
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	231
MspI	CCGG	1 cut(s)	157
MspR9I	CCNGG	2 cut(s)	149, 157
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	149
MwoI	GCNNNNNNNGC	2 cut(s)	90, 107
NciI	CCSGG	1 cut(s)	157
NdeII	GATC	4 cut(s)	214, 313, 471, 528
NlaIII	CATG	1 cut(s)	405
NlaIV	GGNNCC	2 cut(s)	61, 102
NmeAIII	GCCGAG	1 cut(s)	220
NmuCI	GTSAC	1 cut(s)	136
NspV	TTCGAA	1 cut(s)	571
PcsI	WCGNNNNNNNCGW	2 cut(s)	35, 568
PdmI	GAANNNNTTC	1 cut(s)	365
PfeI	GAWTC	1 cut(s)	263
PfoI	TCCNGGA	1 cut(s)	147
PkrI	GCNGC	4 cut(s)	92, 230, 238, 297
PleI	GAGTC	1 cut(s)	160
PpsI	GAGTC	1 cut(s)	160
PshAI	GACNNNNGTC	1 cut(s)	335
Psp124BI	GAGCTC	1 cut(s)	147
Psp6I	CCWGG	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	136
PspFI	CCCAGC	1 cut(s)	231
PspGI	CCWGG	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	61, 102
PvuII	CAGCTG	1 cut(s)	231
RsaI	GTAC	1 cut(s)	465
RsaNI	GTAC	1 cut(s)	464
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	147
SaqAI	TTAA	3 cut(s)	275, 419, 500
SatI	GCNGC	4 cut(s)	91, 229, 237, 296
Sau3AI	GATC	4 cut(s)	214, 313, 471, 528
ScaI	AGTACT	1 cut(s)	465
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	2 cut(s)	149, 157
SduI	GDGCHC	1 cut(s)	147
SetI	ASST	8 cut(s)	29, 78, 126, 147, 233, 275, 335, 560
SfaNI	GCATC	2 cut(s)	446, 463
SfuI	TTCGAA	1 cut(s)	571
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	4 cut(s)	210, 252, 258, 550
SsiI	CCGC	3 cut(s)	63, 183, 236
SspI	AATATT	1 cut(s)	344
SspMI	CTAG	1 cut(s)	434
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	147, 155
StyI	CCWWGG	2 cut(s)	333, 532
TaaI	ACNGT	1 cut(s)	579
TaqI	TCGA	3 cut(s)	29, 339, 571
TasI	AATT	4 cut(s)	210, 252, 258, 550
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	263
Tru1I	TTAA	3 cut(s)	275, 419, 500
Tru9I	TTAA	3 cut(s)	275, 419, 500
TseFI	GTSAC	1 cut(s)	136
TseI	GCWGC	3 cut(s)	90, 228, 295
Tsp45I	GTSAC	1 cut(s)	136
TspDTI	ATGAA	3 cut(s)	358, 432, 554
TspGWI	ACGGA	1 cut(s)	256
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.