Rorug04G0195300

Protein FAR1-RELATED SEQUENCE 11-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0012608
Physical Location & Seq
Reverse (-)
34006990 .. 34013166
6177 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0195300.1

Sequence Viewer

Length: 621 bp
ATGGCGTCCAAGCGGATCTTGAAGGATCCCAAGGATCTCCAGAAAGATCCTCCTACCTCTTGCAGCGCTGGCCCAGTTGCAGAAGACATGTTTCACTGGCAGGCGACAATCATGGGTCCTGCAGACAGTCCCTACGCAGGTGGAGTGTTTCTTGTCACCATACACTTTCCTCCAGACTATCCTTTTAAGCCACCAAAGGTTGCATTCAGGACAAAGGTTAAAGATTTAACTGAGCAGTTTCCAGCCGCTACACGCCTTGCTTTGGTACTGAAACAGTTCTTGGCAGATCGTAGTCTGGATCAGTCTTATTCTGGTGGCTTGAGTTCCTACTGTTTGGTACTACTAATTGTGCATTTTCCCCAGCATGAGTGTCTTCTTGGCCAACCTATCAACCAAGACTTCAGAGACCTTCTGATGAATTTTCTTTATTTTTTTGGGAATGTTTTTGATCCTCGGAAAATGCGTATTTCCGTACAGGGAAATGGAGTTTATATAAAGAGGGAAAGAGGTTGCAGGTTTTGCACCGCTGGGCTTCCTAGTGATGTTGTTGAAGTTGGAGAAATGTCTTTCCATCTTCATAATTTTCTTTTGCTCTCAAGAAGTGAGTTCATGGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

206

Amino Acids

23.27

Weight (kDa)

7.67

Isoelectric Point (pI)

50.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 5 - 73 1.5e-20 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 128
Acc36I ACCTGC 2 cut(s) 128, 504
AciI CCGC 3 cut(s) 13, 246, 525
AclWI GGATC 7 cut(s) 20, 23, 33, 41, 42, 306, 443
AcoI YGGCCR 1 cut(s) 379
AcsI RAATTY 1 cut(s) 418
AcuI CTGAAG 1 cut(s) 385
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 267, 339, 474
AfeI AGCGCT 1 cut(s) 67
AfiI CCNNNNNNNGG 2 cut(s) 137, 262
AflIII ACRYGT 1 cut(s) 87
AgsI TTSAA 2 cut(s) 22, 551
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
Alw26I GTCTC 1 cut(s) 399
AlwI GGATC 7 cut(s) 20, 23, 33, 41, 42, 306, 443
Aor51HI AGCGCT 1 cut(s) 67
AoxI GGCC 2 cut(s) 70, 379
ApeKI GCWGC 1 cut(s) 63
ApoI RAATTY 1 cut(s) 418
Asp700I GAANNNNTTC 1 cut(s) 275
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 71, 116
AsuHPI GGTGA 1 cut(s) 148
AvaII GGWCC 1 cut(s) 116
BalI TGGCCA 1 cut(s) 381
BamHI GGATCC 1 cut(s) 25
BbsI GAAGAC 2 cut(s) 90, 365
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 579
BcoDI GTCTC 1 cut(s) 399
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 120
BfoI RGCGCY 1 cut(s) 69
BfuAI ACCTGC 2 cut(s) 128, 504
BisI GCNGC 2 cut(s) 64, 246
BlsI GCNGC 2 cut(s) 65, 247
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 71, 116
BmiI GGNNCC 2 cut(s) 27, 117
BmrI ACTGGG 1 cut(s) 68
BmuI ACTGGG 1 cut(s) 68
BpiI GAAGAC 2 cut(s) 90, 365
BpmI CTGGAG 2 cut(s) 23, 156
BpuEI CTTGAG 2 cut(s) 340, 580
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 30, 452
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 262
Bse1I ACTGG 2 cut(s) 74, 101
BseDI CCNNGG 2 cut(s) 30, 452
BseLI CCNNNNNNNGG 2 cut(s) 137, 262
BseMII CTCAG 1 cut(s) 222
BseNI ACTGG 2 cut(s) 74, 101
BseXI GCAGC 1 cut(s) 75
BseYI CCCAGC 2 cut(s) 360, 527
BshFI GGCC 2 cut(s) 72, 381
BslFI GGGAC 1 cut(s) 114
BslI CCNNNNNNNGG 2 cut(s) 137, 262
BsmAI GTCTC 1 cut(s) 399
BsmFI GGGAC 1 cut(s) 114
BsmI GAATGC 1 cut(s) 203
BsnI GGCC 2 cut(s) 72, 381
Bso31I GGTCTC 1 cut(s) 399
Bsp143I GATC 7 cut(s) 15, 25, 34, 46, 286, 298, 448
BspACI CCGC 3 cut(s) 13, 246, 525
BspANI GGCC 2 cut(s) 72, 381
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 27, 117
BspMAI CTGCAG 1 cut(s) 124
BspMI ACCTGC 2 cut(s) 128, 504
BspPI GGATC 7 cut(s) 20, 23, 33, 41, 42, 306, 443
BspTNI GGTCTC 1 cut(s) 399
BsrI ACTGG 2 cut(s) 74, 101
BssECI CCNNGG 2 cut(s) 30, 452
BssMI GATC 7 cut(s) 15, 25, 34, 46, 286, 298, 448
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 128, 276, 332
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 519
BstC8I GCNNGC 2 cut(s) 70, 102
BstDEI CTNAG 1 cut(s) 231
BstH2I RGCGCY 1 cut(s) 69
BstHHI GCGC 1 cut(s) 68
BstKTI GATC 7 cut(s) 18, 28, 37, 49, 289, 301, 451
BstMAI GTCTC 1 cut(s) 399
BstMBI GATC 7 cut(s) 15, 25, 34, 46, 286, 298, 448
BstMWI GCNNNNNNNGC 2 cut(s) 69, 519
BstNSI RCATGY 1 cut(s) 91
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 75
BstV2I GAAGAC 2 cut(s) 90, 365
BstX2I RGATCY 4 cut(s) 15, 25, 34, 46
BstYI RGATCY 4 cut(s) 15, 25, 34, 46
BsuRI GGCC 2 cut(s) 72, 381
BtsIMutI CAGTG 1 cut(s) 94
BveI ACCTGC 2 cut(s) 128, 504
Cac8I GCNNGC 2 cut(s) 70, 102
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 2 cut(s) 71, 116
Csp6I GTAC 3 cut(s) 266, 338, 473
CviAII CATG 4 cut(s) 88, 112, 365, 610
CviJI RGCY 6 cut(s) 72, 190, 245, 318, 381, 532
CviKI_1 RGCY 6 cut(s) 72, 190, 245, 318, 381, 532
CviQI GTAC 3 cut(s) 266, 338, 473
DdeI CTNAG 1 cut(s) 231
DpnI GATC 7 cut(s) 17, 27, 36, 48, 288, 300, 450
DpnII GATC 7 cut(s) 15, 25, 34, 46, 286, 298, 448
EaeI YGGCCR 1 cut(s) 379
Eco130I CCWWGG 1 cut(s) 30
Eco31I GGTCTC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 116
Eco47III AGCGCT 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 385
EcoO109I RGGNCCY 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 4 cut(s) 91, 115, 368, 613
FaiI YATR 8 cut(s) 89, 113, 161, 366, 492, 494, 579, 611
FalI AAGNNNNNCTT 1 cut(s) 34
FaqI GGGAC 1 cut(s) 114
FatI CATG 4 cut(s) 87, 111, 364, 609
Fnu4HI GCNGC 2 cut(s) 64, 246
Fsp4HI GCNGC 2 cut(s) 64, 246
FspBI CTAG 1 cut(s) 537
GlaI GCGC 1 cut(s) 67
GluI GCNGC 2 cut(s) 64, 246
GsaI CCCAGC 2 cut(s) 364, 531
GsuI CTGGAG 2 cut(s) 23, 156
HaeII RGCGCY 1 cut(s) 69
HaeIII GGCC 2 cut(s) 72, 381
HhaI GCGC 1 cut(s) 68
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 91, 115, 368, 613
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HphI GGTGA 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 404, 414, 456
Hpy188III TCNNGA 6 cut(s) 19, 40, 173, 208, 296, 597
HpyAV CCTTC 2 cut(s) 16, 419
HpyCH4III ACNGT 3 cut(s) 128, 276, 332
HpyCH4V TGCA 7 cut(s) 63, 80, 122, 203, 352, 513, 522
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 519
HpyF3I CTNAG 1 cut(s) 231
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 91, 115, 368, 613
HspAI GCGC 1 cut(s) 66
Kzo9I GATC 7 cut(s) 15, 25, 34, 46, 286, 298, 448
Lsp1109I GCAGC 1 cut(s) 75
MaeI CTAG 1 cut(s) 537
MaeIII GTNAC 1 cut(s) 154
MalI GATC 7 cut(s) 17, 27, 36, 48, 288, 300, 450
MboI GATC 7 cut(s) 15, 25, 34, 46, 286, 298, 448
MboII GAAGA 3 cut(s) 95, 365, 566
MflI RGATCY 4 cut(s) 15, 25, 34, 46
MlsI TGGCCA 1 cut(s) 381
MluCI AATT 3 cut(s) 345, 418, 580
MluNI TGGCCA 1 cut(s) 381
MmeI TCCRAC 1 cut(s) 535
MnlI CCTC 6 cut(s) 60, 67, 180, 462, 492, 500
Mox20I TGGCCA 1 cut(s) 381
MroXI GAANNNNTTC 1 cut(s) 275
MscI TGGCCA 1 cut(s) 381
MseI TTAA 3 cut(s) 186, 219, 227
Msp20I TGGCCA 1 cut(s) 381
MspA1I CMGCKG 1 cut(s) 527
Mva1269I GAATGC 1 cut(s) 203
MwoI GCNNNNNNNGC 2 cut(s) 69, 519
NdeII GATC 7 cut(s) 15, 25, 34, 46, 286, 298, 448
NlaIII CATG 4 cut(s) 91, 115, 368, 613
NlaIV GGNNCC 2 cut(s) 27, 117
NmuCI GTSAC 1 cut(s) 154
NspI RCATGY 1 cut(s) 91
PaqCI CACCTGC 1 cut(s) 128
PciI ACATGT 1 cut(s) 87
PcsI WCGNNNNNNNCGW 1 cut(s) 460
PctI GAATGC 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 275
PkrI GCNGC 2 cut(s) 65, 247
PpuMI RGGWCCY 1 cut(s) 116
PscI ACATGT 1 cut(s) 87
Psp5II RGGWCCY 1 cut(s) 116
PspFI CCCAGC 2 cut(s) 360, 527
PspN4I GGNNCC 2 cut(s) 27, 117
PspPI GGNCC 2 cut(s) 71, 116
PspPPI RGGWCCY 1 cut(s) 116
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 4 cut(s) 15, 25, 34, 46
RsaI GTAC 3 cut(s) 267, 339, 474
RsaNI GTAC 3 cut(s) 266, 338, 473
SaqAI TTAA 3 cut(s) 186, 219, 227
SatI GCNGC 2 cut(s) 64, 246
Sau3AI GATC 7 cut(s) 15, 25, 34, 46, 286, 298, 448
Sau96I GGNCC 2 cut(s) 71, 116
SetI ASST 8 cut(s) 59, 142, 201, 219, 388, 411, 511, 518
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 1 cut(s) 116
SmlI CTYRAG 2 cut(s) 319, 595
SmoI CTYRAG 2 cut(s) 319, 595
Sse9I AATT 3 cut(s) 345, 418, 580
SsiI CCGC 3 cut(s) 13, 246, 525
SspMI CTAG 1 cut(s) 537
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 128, 276, 332
TasI AATT 3 cut(s) 345, 418, 580
TauI GCSGC 1 cut(s) 248
Tru1I TTAA 3 cut(s) 186, 219, 227
Tru9I TTAA 3 cut(s) 186, 219, 227
TscAI CASTG 1 cut(s) 101
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 1 cut(s) 63
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 431, 566, 598
TspGWI ACGGA 1 cut(s) 460
TspRI CASTG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 116
XapI RAATTY 1 cut(s) 418
XceI RCATGY 1 cut(s) 91
XmnI GAANNNNTTC 1 cut(s) 275
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.