Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005237

Physical Location & Seq

Genomic Coordinates Reverse (-)

36981616 .. 36985747

Gene Structure 4132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0213000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGCCCTTTGTTTTACTCATAATCAATATTCTCTCTCTCTCTCTCTTTTACACACTTCAAAGCTCACACCCCCATTTCCTCCAATCCTGTACTTGCTTCCTCCTCCTCTCCCTCTGCAACTCTCGGGGCTCCGAGCCCCGAATCCCAGGGAAGCTTGAGAGAATGTACTCTGCTTTGCATTCTCTGCCGTTGGATGGGGGTGTTTGTGGGCACGGGGAGTTCAGTGGATCGTTGGATGGTACAAACCTGCCGGGTGATGCTTGCTTGGTTCTGACTACGGATCCAAAGCCCCGGTTGAGGTGGACGGCGGAGCTCCATGAGAGGTTTGTGGACGCTGTGACTCAGCTTGGTGGCCCTGACAAAGCGACACCTAAGACCATTATGAGAACAATGGGAGTAAAAGGCCTTACCCTATATCACTTGAAATCACACCTTCAGAAATATCGACTAGGGAAGCAATCGTTTAAAGAATCAACTGAAAACTCGAAGGATGCTTCTTGCATTGCTGAAAGTCAGGACACTGGGTCTTCGGCAACCTCATCAAGAGTGATCGCCCAAGATTTGAATGATGGCTACCAGGTTACTGAGGCTTTGCGTGTACAAATGGAAGTGCAAAGAAGACTGCATGAGCAGCTGGAGGTGCAGCGTCGCCTTCAACTTCGTATTGAAGCACAGGGAAAGTACCTACAGTCTATACTTGAGAAAGCTTGTAAGGCTCTGAATGACCAGGCTGCAACTGCTGCTGGGCTTGAAGCTGCTAAGGAAGAACTCTCTGAACTTGCTATTAAGGTTTCCAGTGACTGTCAAGGGATGGCCCCACTTGATACCATAAAAATGCAGTCCTTGTCTGAAATTGCTGCAGCAATAGAGAACAAAAGTGCCTCAAATGTACTGGCTCGCATCGGCAATTGCTCTGTTGATAGCTGCTTGACATCAACTGGAAGCCCTGGTTCTCCAATGGGTATGAGTTCACTGGCTGCTGCCATGAAGAAAAGGCAAAGGCCCTTCTTCAGCAATGGAGACTCGTTGCCCTTAGAGGGCAACATGAGGCAAGAAGTAGAATGGATGATGAGTAATATTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0008509 GO:0009987 GO:0010036 GO:0012505 GO:0015075 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098656 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

361

Amino Acids

39.37

Weight (kDa)

7.06

Isoelectric Point (pI)

58.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	98 - 149	2.1e-08	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	193 - 239	1.4e-26	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005237)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G06450 AT3G06450 AT3G06450 AT3G06450
fragaria_vesca	FvH4_4g21020 FvH4_4g21020 FvH4_4g21020 FvH4_4g21020
malus_domestica	MD16G1140300.v1.1
prunus_persica	Prupe.1G109900_v2.0.a1 Prupe.1G109900_v2.0.a1 Prupe.1G109900_v2.0.a1 Prupe.1G109900_v2.0.a1
pyrus_communis	pycom16g12440
rosa_chinensis	RchiOBHm_Chr4g0426551
rosa_laevigata	RLG00000007291
rosa_multiflora	Rmu_sc0001821.1_g000007
rosa_roxburghii	Rroxscaffold_5G00368560
rosa_rugosa	Rorug04G0212700 Rorug04G0212800 Rorug04G0212900 Rorug04G0213000 Rorug04G0213000 Rorug04G0213100
rosa_samantha	Rh4AG268400 Rh4BG274700 Rh4CG289100 Rh4DG271500
rosa_wichuraiana	Rw4G023290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	255
AciI	CCGC	1 cut(s)	308
AclWI	GGATC	3 cut(s)	235, 275, 288
AcuI	CTGAAG	2 cut(s)	419, 994
AfaI	GTAC	6 cut(s)	91, 167, 241, 600, 683, 891
AfiI	CCNNNNNNNGG	3 cut(s)	194, 297, 1037
AgsI	TTSAA	6 cut(s)	59, 424, 565, 656, 668, 752
AhdI	GACNNNNNGTC	1 cut(s)	523
AjnI	CCWGG	4 cut(s)	145, 576, 726, 946
AluBI	AGCT	8 cut(s)	63, 154, 313, 346, 634, 707, 755, 924
AluI	AGCT	8 cut(s)	63, 154, 313, 346, 634, 707, 755, 924
Alw21I	GWGCWC	1 cut(s)	315
Alw26I	GTCTC	1 cut(s)	1014
AlwI	GGATC	3 cut(s)	235, 275, 288
AlwNI	CAGNNNCTG	1 cut(s)	801
Ama87I	CYCGRG	1 cut(s)	123
AoxI	GGCC	4 cut(s)	352, 403, 813, 1001
AspS9I	GGNCC	3 cut(s)	353, 814, 1002
AsuC2I	CCSGG	2 cut(s)	252, 292
AsuHPI	GGTGA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	123
BaeGI	GKGCMC	1 cut(s)	213
BamHI	GGATCC	1 cut(s)	280
BanII	GRGCYC	3 cut(s)	131, 138, 315
BbsI	GAAGAC	2 cut(s)	519, 625
Bbv12I	GWGCWC	1 cut(s)	315
BccI	CCATC	4 cut(s)	188, 230, 563, 805
BceAI	ACGGC	2 cut(s)	172, 321
BciT130I	CCWGG	4 cut(s)	147, 578, 728, 948
BcnI	CCSGG	2 cut(s)	252, 292
BcoDI	GTCTC	1 cut(s)	1014
BfaI	CTAG	1 cut(s)	449
BfmI	CTRYAG	2 cut(s)	686, 858
BfuAI	ACCTGC	1 cut(s)	255
Bme1390I	CCNGG	6 cut(s)	147, 252, 292, 578, 728, 948
BmeRI	GACNNNNNGTC	1 cut(s)	523
BmeT110I	CYCGRG	1 cut(s)	123
BmgT120I	GGNCC	3 cut(s)	353, 814, 1002
BmiI	GGNNCC	3 cut(s)	130, 282, 816
BmrFI	CCNGG	6 cut(s)	147, 252, 292, 578, 728, 948
BmrI	ACTGGG	1 cut(s)	531
BmsI	GCATC	3 cut(s)	247, 481, 909
BmuI	ACTGGG	1 cut(s)	531
BpiI	GAAGAC	2 cut(s)	519, 625
BpmI	CTGGAG	1 cut(s)	656
Bpu10I	CCTNAGC	1 cut(s)	759
BpuEI	CTTGAG	2 cut(s)	176, 719
BpuMI	CCSGG	2 cut(s)	252, 292
BsaJI	CCNNGG	4 cut(s)	145, 146, 290, 946
Bsc4I	CCNNNNNNNGG	3 cut(s)	194, 297, 1037
Bse1I	ACTGG	5 cut(s)	526, 795, 897, 943, 978
Bse3DI	GCAATG	2 cut(s)	501, 1021
BseBI	CCWGG	4 cut(s)	147, 578, 728, 948
BseDI	CCNNGG	4 cut(s)	145, 146, 290, 946
BseGI	GGATG	5 cut(s)	199, 241, 496, 816, 1071
BseLI	CCNNNNNNNGG	3 cut(s)	194, 297, 1037
BseMI	GCAATG	2 cut(s)	501, 1021
BseMII	CTCAG	2 cut(s)	356, 576
BseNI	ACTGG	5 cut(s)	526, 795, 897, 943, 978
BseRI	GAGGAG	2 cut(s)	92, 95
BseSI	GKGCMC	1 cut(s)	213
BseYI	CCCAGC	1 cut(s)	743
BsgI	GTGCAG	1 cut(s)	662
BshFI	GGCC	4 cut(s)	354, 405, 815, 1003
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	251, 292
BslI	CCNNNNNNNGG	3 cut(s)	194, 297, 1037
BsmAI	GTCTC	1 cut(s)	1014
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	4 cut(s)	354, 405, 815, 1003
BsoBI	CYCGRG	1 cut(s)	123
Bsp1286I	GDGCHC	4 cut(s)	131, 138, 213, 315
Bsp1407I	TGTACA	1 cut(s)	598
Bsp143I	GATC	3 cut(s)	227, 280, 549
BspACI	CCGC	1 cut(s)	308
BspANI	GGCC	4 cut(s)	354, 405, 815, 1003
BspCNI	CTCAG	2 cut(s)	355, 577
BspLI	GGNNCC	3 cut(s)	130, 282, 816
BspMAI	CTGCAG	1 cut(s)	862
BspMI	ACCTGC	1 cut(s)	255
BspPI	GGATC	3 cut(s)	235, 275, 288
BsrDI	GCAATG	2 cut(s)	501, 1021
BsrGI	TGTACA	1 cut(s)	598
BsrI	ACTGG	5 cut(s)	526, 795, 897, 943, 978
BssECI	CCNNGG	4 cut(s)	145, 146, 290, 946
BssMI	GATC	3 cut(s)	227, 280, 549
Bst2UI	CCWGG	4 cut(s)	147, 578, 728, 948
Bst4CI	ACNGT	2 cut(s)	690, 803
BstAPI	GCANNNNNTGC	2 cut(s)	184, 740
BstAUI	TGTACA	1 cut(s)	598
BstC8I	GCNNGC	2 cut(s)	262, 898
BstDEI	CTNAG	5 cut(s)	342, 372, 585, 759, 1033
BstF5I	GGATG	5 cut(s)	199, 241, 496, 816, 1071
BstKTI	GATC	3 cut(s)	230, 283, 552
BstMAI	GTCTC	1 cut(s)	1014
BstMBI	GATC	3 cut(s)	227, 280, 549
BstMWI	GCNNNNNNNGC	6 cut(s)	184, 631, 640, 713, 737, 740
BstNI	CCWGG	4 cut(s)	147, 578, 728, 948
BstSCI	CCNGG	6 cut(s)	145, 250, 290, 576, 726, 946
BstSFI	CTRYAG	2 cut(s)	686, 858
BstSLI	GKGCMC	1 cut(s)	213
BstV2I	GAAGAC	2 cut(s)	519, 625
BstX2I	RGATCY	1 cut(s)	280
BstYI	RGATCY	1 cut(s)	280
BsuRI	GGCC	4 cut(s)	354, 405, 815, 1003
BtsCI	GGATG	5 cut(s)	199, 241, 496, 816, 1071
BtsIMutI	CAGTG	4 cut(s)	229, 519, 802, 971
BveI	ACCTGC	1 cut(s)	255
Cac8I	GCNNGC	2 cut(s)	262, 898
CaiI	CAGNNNCTG	1 cut(s)	801
Cfr13I	GGNCC	3 cut(s)	353, 814, 1002
CseI	GACGC	2 cut(s)	341, 635
CsiI	ACCWGGT	1 cut(s)	576
Csp6I	GTAC	6 cut(s)	90, 166, 240, 599, 682, 890
CviAII	CATG	5 cut(s)	317, 626, 985, 1045, 1083
CviQI	GTAC	6 cut(s)	90, 166, 240, 599, 682, 890
DdeI	CTNAG	5 cut(s)	342, 372, 585, 759, 1033
DpnI	GATC	3 cut(s)	229, 282, 551
DpnII	GATC	3 cut(s)	227, 280, 549
DraI	TTTAAA	1 cut(s)	466
DriI	GACNNNNNGTC	1 cut(s)	523
Eam1105I	GACNNNNNGTC	1 cut(s)	523
EciI	GGCGGA	1 cut(s)	323
Ecl136II	GAGCTC	1 cut(s)	313
Eco147I	AGGCCT	1 cut(s)	405
Eco24I	GRGCYC	3 cut(s)	131, 138, 315
Eco53kI	GAGCTC	1 cut(s)	313
Eco57I	CTGAAG	2 cut(s)	419, 994
Eco88I	CYCGRG	1 cut(s)	123
EcoICRI	GAGCTC	1 cut(s)	313
EcoO109I	RGGNCCY	1 cut(s)	1002
EcoRII	CCWGG	4 cut(s)	145, 576, 726, 946
EcoT38I	GRGCYC	3 cut(s)	131, 138, 315
FaeI	CATG	5 cut(s)	320, 629, 988, 1048, 1086
FatI	CATG	5 cut(s)	316, 625, 984, 1044, 1082
FokI	GGATG	5 cut(s)	206, 248, 503, 823, 1078
FriOI	GRGCYC	3 cut(s)	131, 138, 315
FspBI	CTAG	1 cut(s)	449
GsaI	CCCAGC	1 cut(s)	747
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	4 cut(s)	354, 405, 815, 1003
HapII	CCGG	2 cut(s)	251, 292
HgaI	GACGC	2 cut(s)	341, 635
Hin1II	CATG	5 cut(s)	320, 629, 988, 1048, 1086
HindIII	AAGCTT	2 cut(s)	152, 705
HinfI	GANTC	4 cut(s)	141, 340, 470, 1022
HpaII	CCGG	2 cut(s)	251, 292
HphI	GGTGA	1 cut(s)	266
Hpy166II	GTNNAC	4 cut(s)	303, 331, 599, 971
Hpy188I	TCNGA	6 cut(s)	133, 273, 438, 720, 775, 850
Hpy188III	TCNNGA	2 cut(s)	515, 543
Hpy8I	GTNNAC	4 cut(s)	303, 331, 599, 971
Hpy99I	CGWCG	1 cut(s)	651
HpyAV	CCTTC	4 cut(s)	443, 481, 662, 1015
HpyCH4III	ACNGT	2 cut(s)	690, 803
HpyF10VI	GCNNNNNNNGC	6 cut(s)	184, 631, 640, 713, 737, 740
HpyF3I	CTNAG	5 cut(s)	342, 372, 585, 759, 1033
Hsp92II	CATG	5 cut(s)	320, 629, 988, 1048, 1086
Kzo9I	GATC	3 cut(s)	227, 280, 549
LmnI	GCTCC	3 cut(s)	134, 310, 318
LweI	GCATC	3 cut(s)	247, 481, 909
MabI	ACCWGGT	1 cut(s)	576
MaeI	CTAG	1 cut(s)	449
MaeIII	GTNAC	3 cut(s)	337, 580, 797
MalI	GATC	3 cut(s)	229, 282, 551
MboI	GATC	3 cut(s)	227, 280, 549
MboII	GAAGA	5 cut(s)	519, 630, 776, 1000, 1000
MfeI	CAATTG	1 cut(s)	907
MflI	RGATCY	1 cut(s)	280
MhlI	GDGCHC	4 cut(s)	131, 138, 213, 315
MluCI	AATT	2 cut(s)	852, 907
MlyI	GAGTC	2 cut(s)	334, 1016
MmeI	TCCRAC	2 cut(s)	171, 213
MseI	TTAA	2 cut(s)	465, 786
MslI	CAYNNNNRTG	1 cut(s)	833
MspA1I	CMGCKG	1 cut(s)	634
MspI	CCGG	2 cut(s)	251, 292
MspR9I	CCNGG	6 cut(s)	147, 252, 292, 578, 728, 948
MunI	CAATTG	1 cut(s)	907
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	4 cut(s)	147, 578, 728, 948
MwoI	GCNNNNNNNGC	6 cut(s)	184, 631, 640, 713, 737, 740
NciI	CCSGG	2 cut(s)	252, 292
NdeII	GATC	3 cut(s)	227, 280, 549
NlaIII	CATG	5 cut(s)	320, 629, 988, 1048, 1086
NlaIV	GGNNCC	3 cut(s)	130, 282, 816
NmuCI	GTSAC	2 cut(s)	337, 797
PasI	CCCWGGG	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	405
PctI	GAATGC	1 cut(s)	178
PfeI	GAWTC	2 cut(s)	141, 470
PleI	GAGTC	2 cut(s)	334, 1016
PpsI	GAGTC	2 cut(s)	334, 1016
Psp124BI	GAGCTC	1 cut(s)	315
Psp6I	CCWGG	4 cut(s)	145, 576, 726, 946
PspFI	CCCAGC	1 cut(s)	743
PspGI	CCWGG	4 cut(s)	145, 576, 726, 946
PspN4I	GGNNCC	3 cut(s)	130, 282, 816
PspPI	GGNCC	3 cut(s)	353, 814, 1002
PstI	CTGCAG	1 cut(s)	862
PstNI	CAGNNNCTG	1 cut(s)	801
PsuI	RGATCY	1 cut(s)	280
PvuII	CAGCTG	1 cut(s)	634
RsaI	GTAC	6 cut(s)	91, 167, 241, 600, 683, 891
RsaNI	GTAC	6 cut(s)	90, 166, 240, 599, 682, 890
RseI	CAYNNNNRTG	1 cut(s)	833
SacI	GAGCTC	1 cut(s)	315
SaqAI	TTAA	2 cut(s)	465, 786
Sau3AI	GATC	3 cut(s)	227, 280, 549
Sau96I	GGNCC	3 cut(s)	353, 814, 1002
SchI	GAGTC	2 cut(s)	334, 1016
ScrFI	CCNGG	6 cut(s)	147, 252, 292, 578, 728, 948
SduI	GDGCHC	4 cut(s)	131, 138, 213, 315
SexAI	ACCWGGT	1 cut(s)	576
SfaNI	GCATC	3 cut(s)	247, 481, 909
SfcI	CTRYAG	2 cut(s)	686, 858
SmiMI	CAYNNNNRTG	1 cut(s)	833
SmlI	CTYRAG	2 cut(s)	155, 698
SmoI	CTYRAG	2 cut(s)	155, 698
Sse9I	AATT	2 cut(s)	852, 907
SseBI	AGGCCT	1 cut(s)	405
SsiI	CCGC	1 cut(s)	308
SspI	AATATT	2 cut(s)	28, 1078
SspMI	CTAG	1 cut(s)	449
SstI	GAGCTC	1 cut(s)	315
StuI	AGGCCT	1 cut(s)	405
StyD4I	CCNGG	6 cut(s)	145, 250, 290, 576, 726, 946
TaaI	ACNGT	2 cut(s)	690, 803
TaqI	TCGA	2 cut(s)	445, 485
TasI	AATT	2 cut(s)	852, 907
TatI	WGTACW	4 cut(s)	89, 165, 598, 889
TfiI	GAWTC	2 cut(s)	141, 470
Tru1I	TTAA	2 cut(s)	465, 786
Tru9I	TTAA	2 cut(s)	465, 786
TscAI	CASTG	4 cut(s)	229, 526, 802, 978
TseFI	GTSAC	2 cut(s)	337, 797
Tsp45I	GTSAC	2 cut(s)	337, 797
TspDTI	ATGAA	1 cut(s)	1001
TspGWI	ACGGA	1 cut(s)	293
TspRI	CASTG	4 cut(s)	229, 526, 802, 978
XspI	CTAG	1 cut(s)	449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.