Rorug04G0219600

Cytosolic purine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0007993
Physical Location & Seq
Forward (+)
37914798 .. 37915781
984 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0219600.1

Sequence Viewer

Length: 720 bp
ATGTCCAAACTCCCATGGAAGAAGAATCTTCACCTCTGGCTTCCCAGTTTCAAATGCCTACCCCTAATCACCCAAACCCCACCTCAACCCTCCGACCAAGACCACCCTCACCCACACCCACAACTCATGATCATCAACAACTTCAACACCCTCTATCACGACTCCAACTCTTCAGATCAATCCACCTCCAAATCCCTCACCGCCTCCGATGACTTCTTCTACTCTTCCTCCTCCGATTCCGAAGCCGCCCCTGACTCCCCGCCTGACTTCGCCACCGTCTTCGCCTCCCAACGCTTCTTCTTCTCCTCACCCGGCCGCTCCAACTCCATCGTCGAGTCGCCGGACCCCAAACCCAACAACAACGATTCCTTCGTTACCAGAGGTCTTACTGTTTCCAAGTACTCCTCAAATCCTTACTTGGATTTCCGAAATTCCATGGAGGAAATGCTCGAAGCTAGAGATAGAGATCATATAGACAATAAAGATAGAGATCATAATGTGGTGGATGTGTTGAAAAGCGACTTGGATTACCTACACGAGCTGCTGTTGTGCTACCTTCAGTTAAATCCCGAAGACGCCCACAAGGACATTATCAGTGCCTTCACCGACCTTGTCATTTGCATATTGTCTGCTAATCCGGCAGCTTCAACATCAACGTCGGCCGATGACGATCACCGGCTAGAAGAGGAGGAGGAGATTCCGCGGCAACGTCCGTCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
5_nucleotid

Protein Analysis

239

Amino Acids

27.07

Weight (kDa)

4.74

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ovate PF04844 135 - 207 2.3e-16 Transcriptional repressor, ovate
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 318
AccII CGCG 1 cut(s) 703
AciI CCGC 6 cut(s) 201, 246, 260, 316, 701, 703
AcoI YGGCCR 2 cut(s) 313, 660
AcsI RAATTY 1 cut(s) 430
AcuI CTGAAG 2 cut(s) 156, 542
AcyI GRCGYC 1 cut(s) 576
AfaI GTAC 1 cut(s) 401
AgsI TTSAA 4 cut(s) 52, 145, 514, 648
AjuI GAANNNNNNNTTGG 2 cut(s) 506, 538
AluBI AGCT 3 cut(s) 455, 541, 644
AluI AGCT 3 cut(s) 455, 541, 644
AoxI GGCC 2 cut(s) 313, 660
ApeKI GCWGC 2 cut(s) 541, 641
ApoI RAATTY 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 343
AsuC2I CCSGG 1 cut(s) 312
AsuHPI GGTGA 7 cut(s) 23, 61, 101, 190, 300, 595, 665
AvaII GGWCC 1 cut(s) 343
BauI CACGAG 1 cut(s) 536
BbsI GAAGAC 2 cut(s) 271, 579
BbvI GCAGC 2 cut(s) 528, 653
BccI CCATC 1 cut(s) 335
BclI TGATCA 1 cut(s) 129
BcnI CCSGG 1 cut(s) 312
BfaI CTAG 2 cut(s) 456, 680
BisI GCNGC 5 cut(s) 246, 316, 542, 642, 704
BlsI GCNGC 5 cut(s) 247, 317, 543, 643, 705
BmcAI AGTACT 1 cut(s) 401
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 1 cut(s) 343
BmgT120I GGNCC 1 cut(s) 343
BmiI GGNNCC 1 cut(s) 345
BmrFI CCNGG 1 cut(s) 312
BmrI ACTGGG 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 39
BpiI GAAGAC 2 cut(s) 271, 579
BpuMI CCSGG 1 cut(s) 312
BsaBI GATNNNNATC 3 cut(s) 465, 489, 669
BsaHI GRCGYC 1 cut(s) 576
BsaJI CCNNGG 3 cut(s) 14, 435, 701
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bse118I RCCGGY 1 cut(s) 675
Bse1I ACTGG 1 cut(s) 45
Bse8I GATNNNNATC 3 cut(s) 465, 489, 669
BseDI CCNNGG 3 cut(s) 14, 435, 701
BseGI GGATG 1 cut(s) 511
BseJI GATNNNNATC 3 cut(s) 465, 489, 669
BseNI ACTGG 1 cut(s) 45
BseRI GAGGAG 6 cut(s) 220, 295, 394, 701, 704, 707
BseX3I CGGCCG 2 cut(s) 313, 660
BseXI GCAGC 2 cut(s) 528, 653
Bsh1236I CGCG 1 cut(s) 703
Bsh1285I CGRYCG 2 cut(s) 316, 663
BshFI GGCC 2 cut(s) 315, 662
BsiEI CGRYCG 2 cut(s) 316, 663
BsiSI CCGG 4 cut(s) 312, 341, 638, 676
BsnI GGCC 2 cut(s) 315, 662
Bsp143I GATC 5 cut(s) 129, 175, 466, 490, 670
Bsp19I CCATGG 2 cut(s) 14, 435
BspACI CCGC 6 cut(s) 201, 246, 260, 316, 701, 703
BspANI GGCC 2 cut(s) 315, 662
BspFNI CGCG 1 cut(s) 703
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 345
BsrBI CCGCTC 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 675
BsrI ACTGG 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 675
BssECI CCNNGG 3 cut(s) 14, 435, 701
BssMI GATC 5 cut(s) 129, 175, 466, 490, 670
BssNI GRCGYC 1 cut(s) 576
BssSI CACGAG 1 cut(s) 536
BssT1I CCWWGG 2 cut(s) 14, 435
Bst2BI CACGAG 1 cut(s) 536
Bst4CI ACNGT 2 cut(s) 277, 391
Bst6I CTCTTC 3 cut(s) 175, 229, 678
BstACI GRCGYC 1 cut(s) 576
BstDSI CCRYGG 3 cut(s) 14, 435, 701
BstF5I GGATG 1 cut(s) 511
BstFNI CGCG 1 cut(s) 703
BstKTI GATC 5 cut(s) 132, 178, 469, 493, 673
BstMBI GATC 5 cut(s) 129, 175, 466, 490, 670
BstMCI CGRYCG 2 cut(s) 316, 663
BstMWI GCNNNNNNNGC 1 cut(s) 638
BstSCI CCNGG 1 cut(s) 310
BstUI CGCG 1 cut(s) 703
BstV1I GCAGC 2 cut(s) 528, 653
BstV2I GAAGAC 2 cut(s) 271, 579
BstZI CGGCCG 2 cut(s) 313, 660
BsuRI GGCC 2 cut(s) 315, 662
BtgI CCRYGG 3 cut(s) 14, 435, 701
BtsCI GGATG 1 cut(s) 511
BtsIMutI CAGTG 1 cut(s) 601
CciI TCATGA 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 675
Cfr13I GGNCC 1 cut(s) 343
Cfr42I CCGCGG 1 cut(s) 704
CseI GACGC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 400
CviAII CATG 3 cut(s) 15, 127, 436
CviJI RGCY 8 cut(s) 40, 245, 315, 455, 541, 644, 662, 679
CviKI_1 RGCY 8 cut(s) 40, 245, 315, 455, 541, 644, 662, 679
CviQI GTAC 1 cut(s) 400
DpnI GATC 5 cut(s) 131, 177, 468, 492, 672
DpnII GATC 5 cut(s) 129, 175, 466, 490, 670
EaeI YGGCCR 2 cut(s) 313, 660
EagI CGGCCG 2 cut(s) 313, 660
Eam1104I CTCTTC 3 cut(s) 175, 229, 678
EarI CTCTTC 3 cut(s) 175, 229, 678
EclXI CGGCCG 2 cut(s) 313, 660
Eco130I CCWWGG 2 cut(s) 14, 435
Eco47I GGWCC 1 cut(s) 343
Eco52I CGGCCG 2 cut(s) 313, 660
Eco57I CTGAAG 2 cut(s) 156, 542
EcoT14I CCWWGG 2 cut(s) 14, 435
ErhI CCWWGG 2 cut(s) 14, 435
FaeI CATG 3 cut(s) 18, 130, 439
FaiI YATR 7 cut(s) 16, 128, 437, 471, 473, 495, 623
FatI CATG 3 cut(s) 14, 126, 435
FauI CCCGC 1 cut(s) 267
FbaI TGATCA 1 cut(s) 129
Fnu4HI GCNGC 5 cut(s) 246, 316, 542, 642, 704
FokI GGATG 1 cut(s) 518
Fsp4HI GCNGC 5 cut(s) 246, 316, 542, 642, 704
FspBI CTAG 2 cut(s) 456, 680
GluI GCNGC 5 cut(s) 246, 316, 542, 642, 704
HaeIII GGCC 2 cut(s) 315, 662
HapII CCGG 4 cut(s) 312, 341, 638, 676
HgaI GACGC 1 cut(s) 584
Hin1I GRCGYC 1 cut(s) 576
Hin1II CATG 3 cut(s) 18, 130, 439
HinfI GANTC 7 cut(s) 25, 161, 236, 254, 335, 365, 697
HpaII CCGG 4 cut(s) 312, 341, 638, 676
HphI GGTGA 7 cut(s) 23, 61, 101, 190, 300, 595, 665
Hpy188I TCNGA 6 cut(s) 94, 175, 208, 235, 241, 428
Hpy188III TCNNGA 3 cut(s) 127, 158, 569
Hpy99I CGWCG 3 cut(s) 335, 661, 718
HpyAV CCTTC 3 cut(s) 379, 566, 610
HpyCH4III ACNGT 2 cut(s) 277, 391
HpyCH4IV ACGT 2 cut(s) 656, 709
HpyCH4V TGCA 1 cut(s) 621
HpyF10VI GCNNNNNNNGC 1 cut(s) 638
HpySE526I ACGT 2 cut(s) 656, 709
Hsp92I GRCGYC 1 cut(s) 576
Hsp92II CATG 3 cut(s) 18, 130, 439
Ksp22I TGATCA 1 cut(s) 129
KspI CCGCGG 1 cut(s) 704
Kzo9I GATC 5 cut(s) 129, 175, 466, 490, 670
LmnI GCTCC 1 cut(s) 323
LpnPI CCDG 9 cut(s) 22, 58, 264, 276, 325, 354, 391, 651, 689
Lsp1109I GCAGC 2 cut(s) 528, 653
MaeI CTAG 2 cut(s) 456, 680
MaeII ACGT 2 cut(s) 656, 709
MaeIII GTNAC 1 cut(s) 373
MalI GATC 5 cut(s) 131, 177, 468, 492, 672
MbiI CCGCTC 1 cut(s) 318
MboI GATC 5 cut(s) 129, 175, 466, 490, 670
MluCI AATT 1 cut(s) 430
MlyI GAGTC 3 cut(s) 155, 248, 344
MmeI TCCRAC 3 cut(s) 117, 189, 345
MseI TTAA 1 cut(s) 563
MspA1I CMGCKG 1 cut(s) 703
MspI CCGG 4 cut(s) 312, 341, 638, 676
MspR9I CCNGG 1 cut(s) 312
MvnI CGCG 1 cut(s) 703
MwoI GCNNNNNNNGC 1 cut(s) 638
NciI CCSGG 1 cut(s) 312
NcoI CCATGG 2 cut(s) 14, 435
NdeII GATC 5 cut(s) 129, 175, 466, 490, 670
NlaIII CATG 3 cut(s) 18, 130, 439
NlaIV GGNNCC 1 cut(s) 345
PagI TCATGA 1 cut(s) 126
PcsI WCGNNNNNNNCGW 1 cut(s) 369
PfeI GAWTC 4 cut(s) 25, 236, 365, 697
PflFI GACNNNGTC 1 cut(s) 611
PkrI GCNGC 5 cut(s) 247, 317, 543, 643, 705
PleI GAGTC 3 cut(s) 155, 248, 343
PpsI GAGTC 3 cut(s) 155, 248, 343
PspN4I GGNNCC 1 cut(s) 345
PspPI GGNCC 1 cut(s) 343
PsyI GACNNNGTC 1 cut(s) 611
RsaI GTAC 1 cut(s) 401
RsaNI GTAC 1 cut(s) 400
SacII CCGCGG 1 cut(s) 704
SaqAI TTAA 1 cut(s) 563
SatI GCNGC 5 cut(s) 246, 316, 542, 642, 704
Sau3AI GATC 5 cut(s) 129, 175, 466, 490, 670
Sau96I GGNCC 1 cut(s) 343
ScaI AGTACT 1 cut(s) 401
SchI GAGTC 3 cut(s) 155, 248, 344
ScrFI CCNGG 1 cut(s) 312
Sfr303I CCGCGG 1 cut(s) 704
SgrBI CCGCGG 1 cut(s) 704
SinI GGWCC 1 cut(s) 343
Sse9I AATT 1 cut(s) 430
SsiI CCGC 6 cut(s) 201, 246, 260, 316, 701, 703
SspMI CTAG 2 cut(s) 456, 680
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 2 cut(s) 14, 435
TaaI ACNGT 2 cut(s) 277, 391
TaiI ACGT 2 cut(s) 659, 712
TaqI TCGA 2 cut(s) 333, 450
TasI AATT 1 cut(s) 430
TatI WGTACW 1 cut(s) 399
TauI GCSGC 3 cut(s) 248, 318, 706
TfiI GAWTC 4 cut(s) 25, 236, 365, 697
Tru1I TTAA 1 cut(s) 563
Tru9I TTAA 1 cut(s) 563
TscAI CASTG 1 cut(s) 601
TseI GCWGC 2 cut(s) 541, 641
TspGWI ACGGA 1 cut(s) 702
TspRI CASTG 1 cut(s) 601
Tth111I GACNNNGTC 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 343
XapI RAATTY 1 cut(s) 430
XspI CTAG 2 cut(s) 456, 680
ZrmI AGTACT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.