Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008789

Physical Location & Seq

Genomic Coordinates Forward (+)

41929631 .. 41957307

Gene Structure 27677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0248400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGCCACCACCCCAATCCAAGTCTCTGCTTCTTCTTCATCACCCATCATTGGTAAAGTTCCTCTCTTTAGTGCTCCTTATTGCGCAATGTTTGATGGGTTGGTTGGTGAAAGGGTAGATGAAAAGAAAGGTGCAGGCTTTTCCGGGATTGTGGGAGCCGATGACCTGTTGATTGTTGGGCCGGGACTCGGGAGTACTTGGGCGATTAGTTGCAGAGAAATGGCGGGAGTGGTTAAGCAATTGAGTTTTGACAGGAGCATCCGGGTTGTGGGCCATGAGGAGTTGATCAAGGTGGGAATCAAAATGGACCATAAGTTTCCTAATGTCATTTTCTGTGCTCCACCATCTAGAACCTCGGATTATCCCGATGACCATCTGTTCTTTCTTGTTTACATCAAGCTCTGCAACGACAACAGTCCAAGTGTTGCTGATAGAGGTGCCCATGTTTATTGGTTATCGAAGGGGACTGTAGAAGCAAATCCAAATCACGTTCTGAATCTCATACATTACGAGGATACAGCTTCCCTATCTGTTGCAATCTTAAAGAAGCGATTACGTAACCGGATTCTCTTGGGTTGTGACAATCATCCATTGTCCAGGGATATGATTTTAGATTTCAGAAGATTTCTTTTGTATTTGTTCTGCATTTCGATTGTGTGCCCGAAAGAAGTGATTGACTTGGTTAATAAAAGTGGGAAATTTACCAAAGTGTTTGAGAGCTTTACAGGAACTACTGATCCATTGGGTAAGCGATTAAACAACTCAAAAACTTGTGCAGAAATAGGGTGGGAACCAAAATACCCCAGTTTCTCTCAATTCCTTGAGTCTCTGAACAAATGCTTGAAGCCTTTGCAATTTGACTTCATAGTTCATATTCAACTTCAAGCTTGTGTTGGTGACATACTAATGGGGAAGATGTGCTGTTCGAGAGACAATGACGAAGGTATTCTTAACCTCACGACTGTGCTCGTGGTGATTGTTGTAGCTCTTGTGGTTATGACTGTGTTTTCCCCTCAACCGCGACGTGGAGTTGTTGCTATATATCGCTGCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

351

Amino Acids

38.89

Weight (kDa)

8.36

Isoelectric Point (pI)

37.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27850
fragaria_vesca	FvH4_4g24320 FvH4_4g24320 FvH4_4g24320 FvH4_4g24320 FvH4_4g24320
malus_domestica	MD13G1112200.v1.1 MD16G1111800.v1.1
prunus_persica	Prupe.1G233200_v2.0.a1 Prupe.1G233200_v2.0.a1
pyrus_communis	pycom13g09760 pycom16g09480
rosa_chinensis	RchiOBHm_Chr4g0431121
rosa_laevigata	RLG00000006923
rosa_multiflora	Rmu_sc0005258.1_g000001
rosa_roxburghii	Rroxscaffold_5G00372710
rosa_rugosa	Rorug04G0248400 Rorug04G0248500.1
rosa_samantha	Rh4AG304800 Rh4BG312000 Rh4CG328300 Rh4DG308600
rosa_wichuraiana	Rw4G026490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	85
AccB1I	GGYRCC	1 cut(s)	437
AccII	CGCG	1 cut(s)	1021
AciI	CCGC	2 cut(s)	224, 1019
AclWI	GGATC	1 cut(s)	731
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	698
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	4 cut(s)	50, 188, 268, 1025
AgsI	TTSAA	3 cut(s)	844, 878, 884
AjiI	CACGTC	1 cut(s)	1025
AjnI	CCWGG	1 cut(s)	596
AleI	CACNNNNGTG	1 cut(s)	962
AloI	GAACNNNNNNTCC	2 cut(s)	721, 753
AluBI	AGCT	5 cut(s)	400, 521, 720, 887, 986
AluI	AGCT	5 cut(s)	400, 521, 720, 887, 986
Alw21I	GWGCWC	3 cut(s)	76, 340, 969
Alw26I	GTCTC	3 cut(s)	28, 831, 924
AlwI	GGATC	1 cut(s)	731
Ama87I	CYCGRG	1 cut(s)	188
AoxI	GGCC	3 cut(s)	3, 179, 271
ApeKI	GCWGC	1 cut(s)	1047
ApoI	RAATTY	1 cut(s)	698
Asp700I	GAANNNNTTC	1 cut(s)	945
AspLEI	GCGC	1 cut(s)	86
AspS9I	GGNCC	3 cut(s)	179, 271, 307
AsuC2I	CCSGG	3 cut(s)	145, 183, 263
AsuHPI	GGTGA	4 cut(s)	33, 119, 908, 985
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	1 cut(s)	307
BaeGI	GKGCMC	2 cut(s)	442, 662
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	437
BauI	CACGAG	1 cut(s)	968
Bbv12I	GWGCWC	3 cut(s)	76, 340, 969
BbvI	GCAGC	1 cut(s)	1034
BccI	CCATC	4 cut(s)	53, 89, 352, 381
BciT130I	CCWGG	1 cut(s)	598
BciVI	GTATCC	1 cut(s)	508
BclI	TGATCA	1 cut(s)	285
BcnI	CCSGG	3 cut(s)	145, 183, 263
BcoDI	GTCTC	3 cut(s)	28, 831, 924
BfaI	CTAG	1 cut(s)	348
BfmI	CTRYAG	1 cut(s)	468
BfuI	GTATCC	1 cut(s)	508
BisI	GCNGC	1 cut(s)	1048
BlsI	GCNGC	1 cut(s)	1049
BmcAI	AGTACT	1 cut(s)	196
Bme1390I	CCNGG	4 cut(s)	145, 183, 263, 598
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	188
BmgBI	CACGTC	1 cut(s)	1025
BmgT120I	GGNCC	3 cut(s)	179, 271, 307
BmiI	GGNNCC	3 cut(s)	157, 439, 792
BmrFI	CCNGG	4 cut(s)	145, 183, 263, 598
BmrI	ACTGGG	1 cut(s)	798
BmsI	GCATC	1 cut(s)	267
BmuI	ACTGGG	1 cut(s)	798
BoxI	GACNNNNGTC	1 cut(s)	414
BpuEI	CTTGAG	1 cut(s)	842
BpuMI	CCSGG	3 cut(s)	145, 183, 263
BsaAI	YACGTR	1 cut(s)	557
BsaBI	GATNNNNATC	1 cut(s)	372
BsaJI	CCNNGG	2 cut(s)	354, 597
BsaWI	WCCGGW	1 cut(s)	561
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 188, 268, 1025
Bse1I	ACTGG	1 cut(s)	804
Bse3DI	GCAATG	1 cut(s)	93
Bse8I	GATNNNNATC	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	598
BseDI	CCNNGG	2 cut(s)	354, 597
BseGI	GGATG	2 cut(s)	258, 586
BseJI	GATNNNNATC	1 cut(s)	372
BseLI	CCNNNNNNNGG	4 cut(s)	50, 188, 268, 1025
BseMI	GCAATG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	804
BseRI	GAGGAG	1 cut(s)	293
BseSI	GKGCMC	2 cut(s)	442, 662
BseXI	GCAGC	1 cut(s)	1034
BsgI	GTGCAG	2 cut(s)	153, 795
Bsh1236I	CGCG	1 cut(s)	1021
BshFI	GGCC	3 cut(s)	5, 181, 273
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	3 cut(s)	76, 340, 969
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	4 cut(s)	144, 182, 262, 562
BslFI	GGGAC	2 cut(s)	198, 478
BslI	CCNNNNNNNGG	4 cut(s)	50, 188, 268, 1025
BsmAI	GTCTC	3 cut(s)	28, 831, 924
BsmFI	GGGAC	2 cut(s)	198, 478
BsnI	GGCC	3 cut(s)	5, 181, 273
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	5 cut(s)	76, 340, 442, 662, 969
Bsp143I	GATC	2 cut(s)	285, 736
BspACI	CCGC	2 cut(s)	224, 1019
BspANI	GGCC	3 cut(s)	5, 181, 273
BspFNI	CGCG	1 cut(s)	1021
BspLI	GGNNCC	3 cut(s)	157, 439, 792
BspPI	GGATC	1 cut(s)	731
BspT107I	GGYRCC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	804
BssECI	CCNNGG	2 cut(s)	354, 597
BssMI	GATC	2 cut(s)	285, 736
BssSI	CACGAG	1 cut(s)	968
Bst2BI	CACGAG	1 cut(s)	968
Bst2UI	CCWGG	1 cut(s)	598
Bst4CI	ACNGT	4 cut(s)	416, 469, 964, 1003
BstBAI	YACGTR	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	136
BstF5I	GGATG	2 cut(s)	258, 586
BstFNI	CGCG	1 cut(s)	1021
BstHHI	GCGC	1 cut(s)	86
BstKTI	GATC	2 cut(s)	288, 739
BstMAI	GTCTC	3 cut(s)	28, 831, 924
BstMBI	GATC	2 cut(s)	285, 736
BstNI	CCWGG	1 cut(s)	598
BstPAI	GACNNNNGTC	1 cut(s)	414
BstSCI	CCNGG	4 cut(s)	143, 181, 261, 596
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	2 cut(s)	442, 662
BstSNI	TACGTA	1 cut(s)	557
BstUI	CGCG	1 cut(s)	1021
BstV1I	GCAGC	1 cut(s)	1034
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	3 cut(s)	5, 181, 273
BtrI	CACGTC	1 cut(s)	1025
BtsCI	GGATG	2 cut(s)	258, 586
Cac8I	GCNNGC	1 cut(s)	136
CfoI	GCGC	1 cut(s)	86
Cfr13I	GGNCC	3 cut(s)	179, 271, 307
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	2 cut(s)	275, 443
CviQI	GTAC	1 cut(s)	195
DpnI	GATC	2 cut(s)	287, 738
DpnII	GATC	2 cut(s)	285, 736
EaeI	YGGCCR	1 cut(s)	3
Eco105I	TACGTA	1 cut(s)	557
Eco47I	GGWCC	1 cut(s)	307
Eco88I	CYCGRG	1 cut(s)	188
EcoRII	CCWGG	1 cut(s)	596
FaeI	CATG	2 cut(s)	278, 446
FalI	AAGNNNNNCTT	2 cut(s)	933, 965
FaqI	GGGAC	2 cut(s)	198, 478
FatI	CATG	2 cut(s)	274, 442
FauI	CCCGC	1 cut(s)	217
FbaI	TGATCA	1 cut(s)	285
Fnu4HI	GCNGC	1 cut(s)	1048
FokI	GGATG	2 cut(s)	245, 573
Fsp4HI	GCNGC	1 cut(s)	1048
FspBI	CTAG	1 cut(s)	348
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	1 cut(s)	85
GluI	GCNGC	1 cut(s)	1048
HaeIII	GGCC	3 cut(s)	5, 181, 273
HapII	CCGG	4 cut(s)	144, 182, 262, 562
HhaI	GCGC	1 cut(s)	86
Hin1II	CATG	2 cut(s)	278, 446
Hin6I	GCGC	1 cut(s)	84
HinP1I	GCGC	1 cut(s)	84
HindIII	AAGCTT	1 cut(s)	885
HinfI	GANTC	5 cut(s)	186, 297, 496, 565, 824
HpaII	CCGG	4 cut(s)	144, 182, 262, 562
HphI	GGTGA	4 cut(s)	33, 119, 908, 985
Hpy166II	GTNNAC	1 cut(s)	391
Hpy188I	TCNGA	4 cut(s)	358, 495, 620, 831
Hpy188III	TCNNGA	5 cut(s)	190, 348, 365, 927, 958
Hpy8I	GTNNAC	1 cut(s)	391
Hpy99I	CGWCG	1 cut(s)	1026
HpyAV	CCTTC	2 cut(s)	454, 935
HpyCH4III	ACNGT	4 cut(s)	416, 469, 964, 1003
HpyCH4IV	ACGT	3 cut(s)	489, 556, 1024
HpyCH4V	TGCA	7 cut(s)	134, 213, 405, 536, 645, 776, 853
HpySE526I	ACGT	3 cut(s)	489, 556, 1024
Hsp92II	CATG	2 cut(s)	278, 446
HspAI	GCGC	1 cut(s)	84
Ksp22I	TGATCA	1 cut(s)	285
Kzo9I	GATC	2 cut(s)	285, 736
LmnI	GCTCC	4 cut(s)	79, 155, 255, 343
Lsp1109I	GCAGC	1 cut(s)	1034
LweI	GCATC	1 cut(s)	267
MaeI	CTAG	1 cut(s)	348
MaeII	ACGT	3 cut(s)	489, 556, 1024
MaeIII	GTNAC	3 cut(s)	557, 578, 896
MalI	GATC	2 cut(s)	287, 738
MboI	GATC	2 cut(s)	285, 736
MboII	GAAGA	4 cut(s)	24, 27, 633, 925
MfeI	CAATTG	1 cut(s)	239
MhlI	GDGCHC	5 cut(s)	76, 340, 442, 662, 969
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	239, 698, 815, 854
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	180, 833
MnlI	CCTC	7 cut(s)	72, 271, 364, 428, 505, 965, 1023
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	945
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	234, 542, 684, 755, 951
MslI	CAYNNNNRTG	2 cut(s)	905, 962
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	4 cut(s)	144, 182, 262, 562
MspR9I	CCNGG	4 cut(s)	145, 183, 263, 598
MunI	CAATTG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	598
MvnI	CGCG	1 cut(s)	1021
NciI	CCSGG	3 cut(s)	145, 183, 263
NdeII	GATC	2 cut(s)	285, 736
NlaIII	CATG	2 cut(s)	278, 446
NlaIV	GGNNCC	3 cut(s)	157, 439, 792
NmuCI	GTSAC	2 cut(s)	578, 896
NsbI	TGCGCA	1 cut(s)	85
OliI	CACNNNNGTG	1 cut(s)	962
PdmI	GAANNNNTTC	1 cut(s)	945
PfeI	GAWTC	3 cut(s)	297, 496, 565
PfoI	TCCNGGA	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	1049
PleI	GAGTC	2 cut(s)	180, 832
PpsI	GAGTC	2 cut(s)	180, 832
Ppu21I	YACGTR	1 cut(s)	557
PshAI	GACNNNNGTC	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	596
PspGI	CCWGG	1 cut(s)	596
PspN4I	GGNNCC	3 cut(s)	157, 439, 792
PspPI	GGNCC	3 cut(s)	179, 271, 307
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	2 cut(s)	905, 962
SaqAI	TTAA	5 cut(s)	234, 542, 684, 755, 951
SatI	GCNGC	1 cut(s)	1048
Sau3AI	GATC	2 cut(s)	285, 736
Sau96I	GGNCC	3 cut(s)	179, 271, 307
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	2 cut(s)	180, 833
ScrFI	CCNGG	4 cut(s)	145, 183, 263, 598
SduI	GDGCHC	5 cut(s)	76, 340, 442, 662, 969
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	468
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	2 cut(s)	905, 962
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
SnaBI	TACGTA	1 cut(s)	557
Sse9I	AATT	4 cut(s)	239, 698, 815, 854
SsiI	CCGC	2 cut(s)	224, 1019
SspMI	CTAG	1 cut(s)	348
StyD4I	CCNGG	4 cut(s)	143, 181, 261, 596
TaaI	ACNGT	4 cut(s)	416, 469, 964, 1003
TaiI	ACGT	3 cut(s)	492, 559, 1027
TaqI	TCGA	3 cut(s)	458, 650, 926
TasI	AATT	4 cut(s)	239, 698, 815, 854
TatI	WGTACW	1 cut(s)	194
TfiI	GAWTC	3 cut(s)	297, 496, 565
Tru1I	TTAA	5 cut(s)	234, 542, 684, 755, 951
Tru9I	TTAA	5 cut(s)	234, 542, 684, 755, 951
TseFI	GTSAC	2 cut(s)	578, 896
TseI	GCWGC	1 cut(s)	1047
Tsp45I	GTSAC	2 cut(s)	578, 896
TspDTI	ATGAA	4 cut(s)	27, 135, 853, 860
VpaK11BI	GGWCC	1 cut(s)	307
XapI	RAATTY	1 cut(s)	698
XbaI	TCTAGA	1 cut(s)	347
XmnI	GAANNNNTTC	1 cut(s)	945
XspI	CTAG	1 cut(s)	348
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.