Rw4G026490

expressed protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
52692354 .. 52699877
7524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G026490.1

Sequence Viewer

Length: 1707 bp
ATGCCTCCTTCTCCGGCATTGAGGTCCTCTCCAGGCCGAGAGCCGAGAGGGAATCAGCATAGACGAGGTAGGAGTTTCGAGAGTGGAATGATTGTGGGAGGGAAAGATGAAGATCTTGCTTTGTTCAACGAAATGCAGACCCGAGAGAAAGAGGGTTTCTTGCTTCAGTCGGATGATCTTGAAGACACATTTTCTACGAAATTGAGGCAATTTTCGGATTTCAAGCTGGGAATTGCCATTCCTACTCGGGGGGAGAGTAGTGACTTGCTTAATGCCGAAGAAGAGAAAAATGACTACGAGTGGTTATTAACGCCTCCCGACACTCCTCTTTTTCGATCCTTGGATGATGAGCCACCACCAGTTACTACGGTACAGAGGGGGAGACCTCGAAGTCAACCTATTTCTATATCAAGATCATCCACGATGGAGAAGAGTTACCGAAGCAGCAGGGGTAGTGCTAGTCCCAGTCGCCTAAGCCCATCTCCTCGTTCCGGGAATAGTACATTACAGTCAAGAGGAAGGCCATCATCAGCACGCAACTCCAGTCCTACCCCAAGTCTACGTCCTGCTTCTCCTTCACATCTTGCTACTCCATCACGTTCTGCTACTTCATCACGTCCTGGTACTCCATCACGGAGACCATCTACTCCCCCTAGTAAATCCCCATCCCCTGCTCCAAGGTCTTCTACCCCTACCCCCAGGAGGATGAGCACCGGGTCCAGTAGTATTGTGGCTCCACCAGGGAGAAGGGGGACTTCTCCTGTAACGACAAGTAGAGGGAACTCTGCATCACCGAAAATAAAAGCATGGCAAACAAATATTCCGGGCTTCTCCAGTGATGCACCTCCCAACCTTCGCACTTCTCTTGCTGATCGACCGGCAACATATGTGAGGGGTTCCTCTCCAGCATCTAGAAGTGGGAGGGGTTCCTCACCCGCATCTGGATACAGAAGGCAATCAATGTCTCCAACTGCTTCAAGAAGTGTCAGTTCATCTCATAGTCATGATAGAGACCCGTTTAGTTCTCAGAGCAAAGGTTCTATTGCCTCTTCTGGTGACGATGATCTGGACTCTCTGCAATCTCTTCCTGTGGGCAGTTTAGACCGATCAACTCCGAAAAGAGTTTCAGCTTTCTCAAACAACAGAGCTGTGGCGTTCTCAAAGAAATCGGCCAAACTGGTGTCCTCATCTTCTGCTCCAAAAAGATCTTTTGATTCTGCCATTCGACAAATGGATCATCGGAAAACCCCTCAAAACATGTTTAGGCCACTCTTGTCCAGTGTTCCGAGTAGCACCTTCTATGCTGGAAAATCAAGTTCTGTGCATCGTCCTCTGATTTCCAGGAACTCCTCAGTCACAACTAGCAGCAATGCAAGTTCTGATATAGGTACAAGTGTTGCACCTGATACTGAAGGGAGTGATCACAACCAGGATGATATGGCTATTGAGTCTGAGAAGGTGCCATACTCTGATGGTCATGACGAAGTATTTGCCTTTGATAAGATGGATGTAGTAAATGAAGACACTGGGCATGATATCCATGATGGATCACACCACGTTGATGACATTGAATTCACTAGAAGTTCTACAGTTGAGTGTGTAGCTGCTGATTCTGAAGATTCTGGCCATCCCAATATCATGATGGAAGTCAGTCAAACTTCTGAAATCCTCATGTTAAGGGTGATTTTTCTGAAATCGATAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

568

Amino Acids

61.16

Weight (kDa)

9.64

Isoelectric Point (pI)

83.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 390
AccB1I GGYRCC 1 cut(s) 1459
AccI GTMKAC 1 cut(s) 559
AciI CCGC 1 cut(s) 936
AclWI GGATC 3 cut(s) 330, 1242, 1555
AcoI YGGCCR 2 cut(s) 1170, 1624
AcsI RAATTY 1 cut(s) 1571
AcuI CTGAAG 3 cut(s) 149, 1431, 1635
AfaI GTAC 4 cut(s) 372, 502, 625, 1390
AfiI CCNNNNNNNGG 4 cut(s) 248, 491, 702, 941
AflIII ACRYGT 1 cut(s) 1257
AgsI TTSAA 5 cut(s) 127, 182, 223, 978, 1571
AjiI CACGTC 1 cut(s) 617
AjnI CCWGG 6 cut(s) 31, 619, 698, 739, 1340, 1428
AluBI AGCT 4 cut(s) 226, 1130, 1148, 1604
AluI AGCT 4 cut(s) 226, 1130, 1148, 1604
Alw21I GWGCWC 1 cut(s) 713
Alw26I GTCTC 4 cut(s) 376, 631, 969, 1005
AlwI GGATC 3 cut(s) 330, 1242, 1555
Ama87I CYCGRG 2 cut(s) 141, 246
AoxI GGCC 5 cut(s) 34, 521, 1170, 1265, 1624
ApeKI GCWGC 3 cut(s) 444, 1365, 1604
ApoI RAATTY 1 cut(s) 1571
ArsI GACNNNNNNTTYG 2 cut(s) 1472, 1504
AspS9I GGNCC 2 cut(s) 24, 717
AsuC2I CCSGG 3 cut(s) 493, 715, 825
AsuHPI GGTGA 4 cut(s) 783, 924, 1067, 1693
AvaI CYCGRG 2 cut(s) 141, 246
AvaII GGWCC 2 cut(s) 24, 717
BaeI ACNNNNGTAYC 2 cut(s) 1380, 1413
BalI TGGCCA 1 cut(s) 1626
BanI GGYRCC 1 cut(s) 1459
BarI GAAGNNNNNNTAC 2 cut(s) 1448, 1480
BbsI GAAGAC 3 cut(s) 189, 675, 1527
Bbv12I GWGCWC 1 cut(s) 713
BbvI GCAGC 3 cut(s) 456, 1377, 1591
BcgI CGANNNNNNTGC 2 cut(s) 1472, 1506
BciT130I CCWGG 6 cut(s) 33, 621, 700, 741, 1342, 1430
BciVI GTATCC 1 cut(s) 938
BclI TGATCA 1 cut(s) 1420
BcnI CCSGG 3 cut(s) 493, 715, 825
BcoDI GTCTC 4 cut(s) 376, 631, 969, 1005
BfaI CTAG 5 cut(s) 459, 654, 912, 1362, 1578
BfmI CTRYAG 1 cut(s) 1587
BfuI GTATCC 1 cut(s) 938
BglII AGATCT 2 cut(s) 112, 1205
BisI GCNGC 3 cut(s) 445, 1366, 1605
BlsI GCNGC 3 cut(s) 446, 1367, 1606
Bme1390I CCNGG 9 cut(s) 33, 493, 621, 700, 715, 741, 825, 1342, 1430
Bme18I GGWCC 2 cut(s) 24, 717
BmeT110I CYCGRG 2 cut(s) 141, 246
BmgBI CACGTC 1 cut(s) 617
BmgT120I GGNCC 2 cut(s) 24, 717
BmiI GGNNCC 5 cut(s) 718, 735, 898, 928, 1461
BmrFI CCNGG 9 cut(s) 33, 493, 621, 700, 715, 741, 825, 1342, 1430
BmrI ACTGGG 2 cut(s) 459, 1536
BmsI GCATC 5 cut(s) 797, 829, 917, 947, 1333
BmuI ACTGGG 2 cut(s) 459, 1536
BpiI GAAGAC 3 cut(s) 189, 675, 1527
BplI GAGNNNNNCTC 2 cut(s) 13, 45
BpmI CTGGAG 4 cut(s) 15, 526, 817, 888
Bpu10I CCTNAGC 1 cut(s) 473
BpuMI CCSGG 3 cut(s) 493, 715, 825
Bsa29I ATCGAT 1 cut(s) 1697
BsaBI GATNNNNATC 1 cut(s) 111
BsaI GGTCTC 3 cut(s) 376, 631, 1005
BsaJI CCNNGG 4 cut(s) 339, 677, 698, 740
Bsc4I CCNNNNNNNGG 4 cut(s) 248, 491, 702, 941
Bse118I RCCGGY 1 cut(s) 877
Bse1I ACTGG 8 cut(s) 359, 465, 543, 720, 834, 1182, 1278, 1531
Bse3DI GCAATG 1 cut(s) 1375
Bse8I GATNNNNATC 1 cut(s) 111
BseBI CCWGG 6 cut(s) 33, 621, 700, 741, 1342, 1430
BseCI ATCGAT 1 cut(s) 1697
BseDI CCNNGG 4 cut(s) 339, 677, 698, 740
BseGI GGATG 8 cut(s) 178, 349, 416, 665, 711, 1438, 1513, 1627
BseJI GATNNNNATC 1 cut(s) 111
BseLI CCNNNNNNNGG 4 cut(s) 248, 491, 702, 941
BseMI GCAATG 1 cut(s) 1375
BseMII CTCAG 3 cut(s) 1040, 1365, 1443
BseNI ACTGG 8 cut(s) 359, 465, 543, 720, 834, 1182, 1278, 1531
BseRI GAGGAG 3 cut(s) 315, 474, 1339
BseXI GCAGC 3 cut(s) 456, 1377, 1591
BseYI CCCAGC 1 cut(s) 226
Bsh1285I CGRYCG 1 cut(s) 878
BshFI GGCC 5 cut(s) 36, 523, 1172, 1267, 1626
BshNI GGYRCC 1 cut(s) 1459
BshVI ATCGAT 1 cut(s) 1697
BsiEI CGRYCG 1 cut(s) 878
BsiHKAI GWGCWC 1 cut(s) 713
BsiHKCI CYCGRG 2 cut(s) 141, 246
BsiSI CCGG 5 cut(s) 14, 492, 714, 824, 878
BslFI GGGAC 2 cut(s) 447, 766
BslI CCNNNNNNNGG 4 cut(s) 248, 491, 702, 941
BsmAI GTCTC 4 cut(s) 376, 631, 969, 1005
BsmFI GGGAC 2 cut(s) 447, 766
BsnI GGCC 5 cut(s) 36, 523, 1172, 1267, 1626
Bso31I GGTCTC 3 cut(s) 376, 631, 1005
BsoBI CYCGRG 2 cut(s) 141, 246
Bsp1286I GDGCHC 1 cut(s) 713
BspACI CCGC 1 cut(s) 936
BspANI GGCC 5 cut(s) 36, 523, 1172, 1267, 1626
BspCNI CTCAG 3 cut(s) 1039, 1364, 1444
BspDI ATCGAT 1 cut(s) 1697
BspHI TCATGA 3 cut(s) 1003, 1477, 1638
BspLI GGNNCC 5 cut(s) 718, 735, 898, 928, 1461
BspPI GGATC 3 cut(s) 330, 1242, 1555
BspT107I GGYRCC 1 cut(s) 1459
BspTNI GGTCTC 3 cut(s) 376, 631, 1005
BsrDI GCAATG 1 cut(s) 1375
BsrFI RCCGGY 1 cut(s) 877
BsrI ACTGG 8 cut(s) 359, 465, 543, 720, 834, 1182, 1278, 1531
BssAI RCCGGY 1 cut(s) 877
BssECI CCNNGG 4 cut(s) 339, 677, 698, 740
BssT1I CCWWGG 2 cut(s) 339, 677
Bst2UI CCWGG 6 cut(s) 33, 621, 700, 741, 1342, 1430
Bst4CI ACNGT 3 cut(s) 370, 510, 1591
Bst6I CTCTTC 4 cut(s) 276, 425, 1054, 1089
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 4 cut(s) 473, 1026, 1351, 1452
BstF5I GGATG 8 cut(s) 178, 349, 416, 665, 711, 1438, 1513, 1627
BstMAI GTCTC 4 cut(s) 376, 631, 969, 1005
BstMCI CGRYCG 1 cut(s) 878
BstNI CCWGG 6 cut(s) 33, 621, 700, 741, 1342, 1430
BstNSI RCATGY 1 cut(s) 1261
BstSCI CCNGG 9 cut(s) 31, 491, 619, 698, 713, 739, 823, 1340, 1428
BstSFI CTRYAG 1 cut(s) 1587
BstV1I GCAGC 3 cut(s) 456, 1377, 1591
BstV2I GAAGAC 3 cut(s) 189, 675, 1527
BstX2I RGATCY 2 cut(s) 112, 1205
BstYI RGATCY 2 cut(s) 112, 1205
Bsu15I ATCGAT 1 cut(s) 1697
BsuI GTATCC 1 cut(s) 938
BsuRI GGCC 5 cut(s) 36, 523, 1172, 1267, 1626
BsuTUI ATCGAT 1 cut(s) 1697
BtrI CACGTC 1 cut(s) 617
BtsCI GGATG 8 cut(s) 178, 349, 416, 665, 711, 1438, 1513, 1627
BtsIMutI CAGTG 3 cut(s) 841, 1285, 1524
Cac8I GCNNGC 1 cut(s) 535
CciI TCATGA 3 cut(s) 1003, 1477, 1638
Cfr10I RCCGGY 1 cut(s) 877
Cfr13I GGNCC 2 cut(s) 24, 717
ClaI ATCGAT 1 cut(s) 1697
Csp6I GTAC 4 cut(s) 371, 501, 624, 1389
CviAII CATG 8 cut(s) 807, 1004, 1258, 1478, 1532, 1541, 1639, 1672
CviQI GTAC 4 cut(s) 371, 501, 624, 1389
DdeI CTNAG 4 cut(s) 473, 1026, 1351, 1452
DrdI GACNNNNNNGTC 1 cut(s) 390
DseDI GACNNNNNNGTC 1 cut(s) 390
EaeI YGGCCR 2 cut(s) 1170, 1624
Eam1104I CTCTTC 4 cut(s) 276, 425, 1054, 1089
EarI CTCTTC 4 cut(s) 276, 425, 1054, 1089
Eco130I CCWWGG 2 cut(s) 339, 677
Eco31I GGTCTC 3 cut(s) 376, 631, 1005
Eco32I GATATC 1 cut(s) 1537
Eco47I GGWCC 2 cut(s) 24, 717
Eco57I CTGAAG 3 cut(s) 149, 1431, 1635
Eco88I CYCGRG 2 cut(s) 141, 246
EcoO109I RGGNCCY 1 cut(s) 24
EcoRI GAATTC 1 cut(s) 1571
EcoRII CCWGG 6 cut(s) 31, 619, 698, 739, 1340, 1428
EcoRV GATATC 1 cut(s) 1537
EcoT14I CCWWGG 2 cut(s) 339, 677
ErhI CCWWGG 2 cut(s) 339, 677
FaeI CATG 8 cut(s) 810, 1007, 1261, 1481, 1535, 1544, 1642, 1675
FalI AAGNNNNNCTT 2 cut(s) 739, 771
FaqI GGGAC 2 cut(s) 447, 766
FatI CATG 8 cut(s) 806, 1003, 1257, 1477, 1531, 1540, 1638, 1671
FauI CCCGC 1 cut(s) 943
FauNDI CATATG 1 cut(s) 886
FbaI TGATCA 1 cut(s) 1420
FblI GTMKAC 1 cut(s) 559
Fnu4HI GCNGC 3 cut(s) 445, 1366, 1605
FokI GGATG 8 cut(s) 185, 356, 403, 652, 718, 1445, 1520, 1614
Fsp4HI GCNGC 3 cut(s) 445, 1366, 1605
FspBI CTAG 5 cut(s) 459, 654, 912, 1362, 1578
GluI GCNGC 3 cut(s) 445, 1366, 1605
GsaI CCCAGC 1 cut(s) 230
GsuI CTGGAG 4 cut(s) 15, 526, 817, 888
HaeIII GGCC 5 cut(s) 36, 523, 1172, 1267, 1626
HapII CCGG 5 cut(s) 14, 492, 714, 824, 878
Hin1II CATG 8 cut(s) 810, 1007, 1261, 1481, 1535, 1544, 1642, 1675
HincII GTYRAC 1 cut(s) 395
HindII GTYRAC 1 cut(s) 395
HinfI GANTC 6 cut(s) 52, 1070, 1214, 1448, 1610, 1619
HpaII CCGG 5 cut(s) 14, 492, 714, 824, 878
HphI GGTGA 4 cut(s) 783, 924, 1067, 1693
Hpy166II GTNNAC 2 cut(s) 395, 560
Hpy8I GTNNAC 2 cut(s) 395, 560
HpyAV CCTTC 9 cut(s) 18, 513, 585, 741, 863, 945, 1306, 1406, 1450
HpyCH4III ACNGT 3 cut(s) 370, 510, 1591
HpyCH4IV ACGT 4 cut(s) 562, 598, 616, 1557
HpyCH4V TGCA 7 cut(s) 136, 788, 842, 1078, 1324, 1373, 1400
HpyF3I CTNAG 4 cut(s) 473, 1026, 1351, 1452
HpySE526I ACGT 4 cut(s) 562, 598, 616, 1557
Hsp92II CATG 8 cut(s) 810, 1007, 1261, 1481, 1535, 1544, 1642, 1675
Ksp22I TGATCA 1 cut(s) 1420
LmnI GCTCC 3 cut(s) 679, 739, 1201
Lsp1109I GCAGC 3 cut(s) 456, 1377, 1591
LweI GCATC 5 cut(s) 797, 829, 917, 947, 1333
MaeI CTAG 5 cut(s) 459, 654, 912, 1362, 1578
MaeII ACGT 4 cut(s) 562, 598, 616, 1557
MaeIII GTNAC 6 cut(s) 260, 361, 434, 763, 1055, 1354
MflI RGATCY 2 cut(s) 112, 1205
MhlI GDGCHC 1 cut(s) 713
MlsI TGGCCA 1 cut(s) 1626
MluCI AATT 4 cut(s) 200, 209, 231, 1571
MluNI TGGCCA 1 cut(s) 1626
MlyI GAGTC 2 cut(s) 1064, 1457
MmeI TCCRAC 2 cut(s) 150, 992
Mox20I TGGCCA 1 cut(s) 1626
MscI TGGCCA 1 cut(s) 1626
MseI TTAA 3 cut(s) 270, 308, 1676
MslI CAYNNNNRTG 2 cut(s) 1002, 1560
Msp20I TGGCCA 1 cut(s) 1626
MspI CCGG 5 cut(s) 14, 492, 714, 824, 878
MspR9I CCNGG 9 cut(s) 33, 493, 621, 700, 715, 741, 825, 1342, 1430
MvaI CCWGG 6 cut(s) 33, 621, 700, 741, 1342, 1430
NciI CCSGG 3 cut(s) 493, 715, 825
NdeI CATATG 1 cut(s) 886
NlaIII CATG 8 cut(s) 810, 1007, 1261, 1481, 1535, 1544, 1642, 1675
NlaIV GGNNCC 5 cut(s) 718, 735, 898, 928, 1461
NmeAIII GCCGAG 2 cut(s) 62, 69
NmuCI GTSAC 3 cut(s) 260, 1055, 1354
NspI RCATGY 1 cut(s) 1261
PagI TCATGA 3 cut(s) 1003, 1477, 1638
PciI ACATGT 1 cut(s) 1257
PfeI GAWTC 4 cut(s) 52, 1214, 1610, 1619
PfoI TCCNGGA 2 cut(s) 491, 1340
PkrI GCNGC 3 cut(s) 446, 1367, 1606
PleI GAGTC 2 cut(s) 1064, 1456
PpsI GAGTC 2 cut(s) 1064, 1456
PpuMI RGGWCCY 1 cut(s) 24
PscI ACATGT 1 cut(s) 1257
Psp5II RGGWCCY 1 cut(s) 24
Psp6I CCWGG 6 cut(s) 31, 619, 698, 739, 1340, 1428
PspFI CCCAGC 1 cut(s) 226
PspGI CCWGG 6 cut(s) 31, 619, 698, 739, 1340, 1428
PspN4I GGNNCC 5 cut(s) 718, 735, 898, 928, 1461
PspPI GGNCC 2 cut(s) 24, 717
PspPPI RGGWCCY 1 cut(s) 24
PsuI RGATCY 2 cut(s) 112, 1205
RsaI GTAC 4 cut(s) 372, 502, 625, 1390
RsaNI GTAC 4 cut(s) 371, 501, 624, 1389
RseI CAYNNNNRTG 2 cut(s) 1002, 1560
SaqAI TTAA 3 cut(s) 270, 308, 1676
SatI GCNGC 3 cut(s) 445, 1366, 1605
Sau96I GGNCC 2 cut(s) 24, 717
SchI GAGTC 2 cut(s) 1064, 1457
ScrFI CCNGG 9 cut(s) 33, 493, 621, 700, 715, 741, 825, 1342, 1430
SduI GDGCHC 1 cut(s) 713
SfaNI GCATC 5 cut(s) 797, 829, 917, 947, 1333
SfcI CTRYAG 1 cut(s) 1587
SinI GGWCC 2 cut(s) 24, 717
SmiMI CAYNNNNRTG 2 cut(s) 1002, 1560
Sse9I AATT 4 cut(s) 200, 209, 231, 1571
SsiI CCGC 1 cut(s) 936
SspI AATATT 1 cut(s) 820
SspMI CTAG 5 cut(s) 459, 654, 912, 1362, 1578
StyD4I CCNGG 9 cut(s) 31, 491, 619, 698, 713, 739, 823, 1340, 1428
StyI CCWWGG 2 cut(s) 339, 677
TaaI ACNGT 3 cut(s) 370, 510, 1591
TaiI ACGT 4 cut(s) 565, 601, 619, 1560
TaqI TCGA 6 cut(s) 78, 334, 388, 874, 1225, 1697
TaqII GACCGA 1 cut(s) 1119
TasI AATT 4 cut(s) 200, 209, 231, 1571
TatI WGTACW 1 cut(s) 500
TfiI GAWTC 4 cut(s) 52, 1214, 1610, 1619
Tru1I TTAA 3 cut(s) 270, 308, 1676
Tru9I TTAA 3 cut(s) 270, 308, 1676
TscAI CASTG 3 cut(s) 841, 1285, 1531
TseFI GTSAC 3 cut(s) 260, 1055, 1354
TseI GCWGC 3 cut(s) 444, 1365, 1604
Tsp45I GTSAC 3 cut(s) 260, 1055, 1354
TspDTI ATGAA 4 cut(s) 123, 600, 981, 1533
TspGWI ACGGA 1 cut(s) 649
TspRI CASTG 3 cut(s) 841, 1285, 1531
VpaK11BI GGWCC 2 cut(s) 24, 717
XapI RAATTY 1 cut(s) 1571
XbaI TCTAGA 1 cut(s) 911
XceI RCATGY 1 cut(s) 1261
XcmI CCANNNNNNNNNTGG 3 cut(s) 727, 1228, 1639
XmiI GTMKAC 1 cut(s) 559
XspI CTAG 5 cut(s) 459, 654, 912, 1362, 1578
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.