Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0006154

Physical Location & Seq

Genomic Coordinates Forward (+)

52197751 .. 52199140

Gene Structure 1390 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0349800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGAACTCATCCACCACCCCATTAAGACCAACACTCCCTAGTTTCTCTCCCTCTCTTCCCCCCTGCTCCTTCTTCTTCTTCACTCGCTCCTCAAACCCTAAATCGCAACGAAATGAGTCGAAATCAATCAAATGCGTCCATAGTGGTTTTGGTTCGTATGCTCCTTGCAAATCAAGCATTCGAAACCCTTCCGCGCTGTCATCTTGCTTGACGGAGGCTCCAGCTCTGGTTCGGACCTCTGACATGGTTGCGGATAAGATGCAACGGCTGGTTTTGGAATTCAAGTCTCTGACGGAGCCGATAGACCGCGTGAAGAGGCTTTTACACTACGCGGCGAACCTGCCGCCGTGCAGCGAGCCGGCTCGGCAGCCGGAGAGCCGGGTCCCGGGATGCACGACTCAGGTGTGGCTGGAGGCCGAGCTGGACGAGCTGGGGCGAATGAGGTTCTGGGCCGATAGCGACTCGGAGATCTCGAAAGGGTTCTGCTCGTGCCTGATTTGGATGCTCGACGGCGCCGAGCCGAGGGAGGTCTTGGAAATAAAGGCCAAAGATTTGGAGGATGTGAATGTGGGACTGTACGGAAAGGCCAATTCCAGAGTGAACACATGGCACAACGTGTTGTTGGCGATGCAGAGGAAGACTCAGGCTTTGGTTACGGTGGCGGAGAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009507 GO:0009536 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015318 GO:0015672 GO:0016020 GO:0022857 GO:0022890 GO:0030001 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0071804 GO:0071805 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

K_trans

Protein Analysis

223

Amino Acids

24.88

Weight (kDa)

8.63

Isoelectric Point (pI)

54.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SufE	PF02657	93 - 212	1.6e-28	Fe-S metabolism associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006154)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G60160
fragaria_vesca	FvH4_4g34780 FvH4_4g34780 FvH4_4g34780 FvH4_4g34780 FvH4_4g34780 FvH4_4g34780
malus_domestica	MD13G1089800.v1.1 MD16G1090100.v1.1
prunus_persica	Prupe.1G256000_v2.0.a1 Prupe.1G256000_v2.0.a1
pyrus_communis	pycom13g07830 pycom16g07720
rosa_chinensis	RchiOBHm_Chr4g0444121
rosa_laevigata	RLG00000005854
rosa_multiflora	Rmu_sc0012638.1_g000008
rosa_roxburghii	Rroxscaffold_5G00384710
rosa_rugosa	Rorug04G0349800 Rorug04G0349900 Rorug04G0350000 Rorug04G0350100.1 Rorug04G0350200
rosa_samantha	Rh4AG410800 Rh4BG422200 Rh4CG436600 Rh4DG417500
rosa_wichuraiana	Rw4G035290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	348
AccB1I	GGYRCC	1 cut(s)	512
AccII	CGCG	3 cut(s)	194, 309, 332
AciI	CCGC	6 cut(s)	192, 251, 307, 332, 344, 662
AcsI	RAATTY	1 cut(s)	278
AcyI	GRCGYC	1 cut(s)	513
AdeI	CACNNNGTG	1 cut(s)	616
AfaI	GTAC	1 cut(s)	578
AfiI	CCNNNNNNNGG	2 cut(s)	385, 522
AflIII	ACRYGT	1 cut(s)	615
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	3 cut(s)	224, 421, 430
AluI	AGCT	3 cut(s)	224, 421, 430
Alw26I	GTCTC	1 cut(s)	291
Ama87I	CYCGRG	1 cut(s)	385
AoxI	GGCC	4 cut(s)	414, 450, 543, 585
ApeKI	GCWGC	2 cut(s)	351, 367
ApoI	RAATTY	1 cut(s)	278
ArsI	GACNNNNNNTTYG	2 cut(s)	631, 663
Asp700I	GAANNNNTTC	2 cut(s)	187, 479
AspLEI	GCGC	2 cut(s)	196, 515
AspS9I	GGNCC	3 cut(s)	234, 382, 450
AsuC2I	CCSGG	3 cut(s)	380, 386, 387
AsuII	TTCGAA	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	385
AvaII	GGWCC	2 cut(s)	234, 382
BanI	GGYRCC	1 cut(s)	512
BauI	CACGAG	1 cut(s)	487
BbsI	GAAGAC	1 cut(s)	644
BbvI	GCAGC	2 cut(s)	363, 379
BceAI	ACGGC	3 cut(s)	281, 331, 526
BcnI	CCSGG	3 cut(s)	380, 386, 387
BcoDI	GTCTC	1 cut(s)	291
BfaI	CTAG	1 cut(s)	39
BfoI	RGCGCY	1 cut(s)	516
BfuAI	ACCTGC	1 cut(s)	348
BglI	GCCNNNNNGGC	1 cut(s)	364
BglII	AGATCT	1 cut(s)	468
BisI	GCNGC	4 cut(s)	333, 344, 352, 368
BlsI	GCNGC	4 cut(s)	334, 345, 353, 369
Bme1390I	CCNGG	3 cut(s)	380, 386, 387
Bme18I	GGWCC	2 cut(s)	234, 382
BmeT110I	CYCGRG	1 cut(s)	385
BmgT120I	GGNCC	3 cut(s)	234, 382, 450
BmiI	GGNNCC	5 cut(s)	219, 297, 383, 384, 514
BmrFI	CCNGG	3 cut(s)	380, 386, 387
BmsI	GCATC	4 cut(s)	249, 380, 492, 618
BpiI	GAAGAC	1 cut(s)	644
BplI	GAGNNNNNCTC	2 cut(s)	625, 657
BpmI	CTGGAG	2 cut(s)	204, 431
Bpu14I	TTCGAA	1 cut(s)	181
BpuMI	CCSGG	3 cut(s)	380, 386, 387
BsaHI	GRCGYC	1 cut(s)	513
BsaJI	CCNNGG	2 cut(s)	385, 521
BsaXI	ACNNNNNCTCC	4 cut(s)	18, 48, 202, 232
Bsc4I	CCNNNNNNNGG	2 cut(s)	385, 522
Bse118I	RCCGGY	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	385, 521
BseGI	GGATG	4 cut(s)	8, 395, 507, 565
BseLI	CCNNNNNNNGG	2 cut(s)	385, 522
BseMII	CTCAG	2 cut(s)	413, 656
BseRI	GAGGAG	1 cut(s)	79
BseXI	GCAGC	2 cut(s)	363, 379
BseYI	CCCAGC	1 cut(s)	430
BsgI	GTGCAG	1 cut(s)	370
Bsh1236I	CGCG	3 cut(s)	194, 309, 332
BshFI	GGCC	4 cut(s)	416, 452, 545, 587
BshNI	GGYRCC	1 cut(s)	512
BsiHKCI	CYCGRG	1 cut(s)	385
BsiSI	CCGG	4 cut(s)	359, 371, 379, 386
BslFI	GGGAC	2 cut(s)	368, 585
BslI	CCNNNNNNNGG	2 cut(s)	385, 522
BsmAI	GTCTC	1 cut(s)	291
BsmFI	GGGAC	2 cut(s)	368, 585
BsmI	GAATGC	1 cut(s)	177
BsnI	GGCC	4 cut(s)	416, 452, 545, 587
BsoBI	CYCGRG	1 cut(s)	385
Bsp119I	TTCGAA	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	468
BspACI	CCGC	6 cut(s)	192, 251, 307, 332, 344, 662
BspANI	GGCC	4 cut(s)	416, 452, 545, 587
BspCNI	CTCAG	2 cut(s)	412, 655
BspFNI	CGCG	3 cut(s)	194, 309, 332
BspLI	GGNNCC	5 cut(s)	219, 297, 383, 384, 514
BspMI	ACCTGC	1 cut(s)	348
BspT104I	TTCGAA	1 cut(s)	181
BspT107I	GGYRCC	1 cut(s)	512
BsrFI	RCCGGY	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	2 cut(s)	385, 521
BssMI	GATC	1 cut(s)	468
BssNI	GRCGYC	1 cut(s)	513
BssSI	CACGAG	1 cut(s)	487
Bst2BI	CACGAG	1 cut(s)	487
Bst4CI	ACNGT	2 cut(s)	576, 658
Bst6I	CTCTTC	2 cut(s)	60, 308
BstACI	GRCGYC	1 cut(s)	513
BstBI	TTCGAA	1 cut(s)	181
BstC8I	GCNNGC	2 cut(s)	356, 360
BstDEI	CTNAG	2 cut(s)	399, 642
BstF5I	GGATG	4 cut(s)	8, 395, 507, 565
BstFNI	CGCG	3 cut(s)	194, 309, 332
BstH2I	RGCGCY	1 cut(s)	516
BstHHI	GCGC	2 cut(s)	196, 515
BstKTI	GATC	1 cut(s)	471
BstMAI	GTCTC	1 cut(s)	291
BstMBI	GATC	1 cut(s)	468
BstMWI	GCNNNNNNNGC	3 cut(s)	174, 364, 427
BstSCI	CCNGG	3 cut(s)	378, 384, 385
BstUI	CGCG	3 cut(s)	194, 309, 332
BstV1I	GCAGC	2 cut(s)	363, 379
BstV2I	GAAGAC	1 cut(s)	644
BstX2I	RGATCY	1 cut(s)	468
BstXI	CCANNNNNNTGG	1 cut(s)	553
BstYI	RGATCY	1 cut(s)	468
BsuRI	GGCC	4 cut(s)	416, 452, 545, 587
BtgZI	GCGATG	1 cut(s)	641
BtsCI	GGATG	4 cut(s)	8, 395, 507, 565
BveI	ACCTGC	1 cut(s)	348
Cac8I	GCNNGC	2 cut(s)	356, 360
CfoI	GCGC	2 cut(s)	196, 515
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	3 cut(s)	234, 382, 450
Cfr9I	CCCGGG	1 cut(s)	385
CseI	GACGC	1 cut(s)	124
Csp6I	GTAC	1 cut(s)	577
CviAII	CATG	2 cut(s)	244, 606
CviQI	GTAC	1 cut(s)	577
DdeI	CTNAG	2 cut(s)	399, 642
DinI	GGCGCC	1 cut(s)	514
DpnI	GATC	1 cut(s)	470
DpnII	GATC	1 cut(s)	468
DraIII	CACNNNGTG	1 cut(s)	616
Eam1104I	CTCTTC	2 cut(s)	60, 308
EarI	CTCTTC	2 cut(s)	60, 308
Eco47I	GGWCC	2 cut(s)	234, 382
Eco88I	CYCGRG	1 cut(s)	385
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	278
EgeI	GGCGCC	1 cut(s)	514
EheI	GGCGCC	1 cut(s)	514
FaeI	CATG	2 cut(s)	247, 609
FaiI	YATR	4 cut(s)	141, 159, 245, 607
FaqI	GGGAC	2 cut(s)	368, 585
FatI	CATG	2 cut(s)	243, 605
Fnu4HI	GCNGC	4 cut(s)	333, 344, 352, 368
FokI	GGATG	3 cut(s)	402, 514, 572
Fsp4HI	GCNGC	4 cut(s)	333, 344, 352, 368
FspBI	CTAG	1 cut(s)	39
GlaI	GCGC	2 cut(s)	195, 514
GluI	GCNGC	4 cut(s)	333, 344, 352, 368
GsaI	CCCAGC	1 cut(s)	434
GsuI	CTGGAG	2 cut(s)	204, 431
HaeII	RGCGCY	1 cut(s)	516
HaeIII	GGCC	4 cut(s)	416, 452, 545, 587
HapII	CCGG	4 cut(s)	359, 371, 379, 386
HgaI	GACGC	1 cut(s)	124
HhaI	GCGC	2 cut(s)	196, 515
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	2 cut(s)	247, 609
Hin6I	GCGC	2 cut(s)	194, 513
HinP1I	GCGC	2 cut(s)	194, 513
HinfI	GANTC	4 cut(s)	116, 397, 461, 640
HpaII	CCGG	4 cut(s)	359, 371, 379, 386
Hpy166II	GTNNAC	1 cut(s)	601
Hpy188I	TCNGA	4 cut(s)	234, 241, 291, 466
Hpy188III	TCNNGA	2 cut(s)	472, 594
Hpy8I	GTNNAC	1 cut(s)	601
Hpy99I	CGWCG	1 cut(s)	512
HpyAV	CCTTC	2 cut(s)	79, 198
HpyCH4III	ACNGT	2 cut(s)	576, 658
HpyCH4IV	ACGT	1 cut(s)	615
HpyCH4V	TGCA	5 cut(s)	168, 262, 351, 393, 631
HpyF10VI	GCNNNNNNNGC	3 cut(s)	174, 364, 427
HpyF3I	CTNAG	2 cut(s)	399, 642
HpySE526I	ACGT	1 cut(s)	615
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	2 cut(s)	247, 609
HspAI	GCGC	2 cut(s)	194, 513
KasI	GGCGCC	1 cut(s)	512
KflI	GGGWCCC	1 cut(s)	382
KroI	GCCGGC	1 cut(s)	358
KroNI	GCCGGC	1 cut(s)	360
Kzo9I	GATC	1 cut(s)	468
LmnI	GCTCC	5 cut(s)	71, 92, 166, 223, 295
Lsp1109I	GCAGC	2 cut(s)	363, 379
LweI	GCATC	4 cut(s)	249, 380, 492, 618
MaeI	CTAG	1 cut(s)	39
MaeII	ACGT	1 cut(s)	615
MaeIII	GTNAC	1 cut(s)	652
MalI	GATC	1 cut(s)	470
MboI	GATC	1 cut(s)	468
MboII	GAAGA	6 cut(s)	47, 64, 67, 70, 325, 649
MflI	RGATCY	1 cut(s)	468
MluCI	AATT	2 cut(s)	278, 589
Mly113I	GGCGCC	1 cut(s)	513
MlyI	GAGTC	4 cut(s)	125, 391, 455, 634
MroNI	GCCGGC	1 cut(s)	358
MroXI	GAANNNNTTC	2 cut(s)	187, 479
MseI	TTAA	1 cut(s)	23
MspI	CCGG	4 cut(s)	359, 371, 379, 386
MspR9I	CCNGG	3 cut(s)	380, 386, 387
Mva1269I	GAATGC	1 cut(s)	177
MvnI	CGCG	3 cut(s)	194, 309, 332
MwoI	GCNNNNNNNGC	3 cut(s)	174, 364, 427
NaeI	GCCGGC	1 cut(s)	360
NarI	GGCGCC	1 cut(s)	513
NciI	CCSGG	3 cut(s)	380, 386, 387
NdeII	GATC	1 cut(s)	468
NgoMIV	GCCGGC	1 cut(s)	358
NlaIII	CATG	2 cut(s)	247, 609
NlaIV	GGNNCC	5 cut(s)	219, 297, 383, 384, 514
NmeAIII	GCCGAG	4 cut(s)	343, 442, 541, 546
NspV	TTCGAA	1 cut(s)	181
PcsI	WCGNNNNNNNCGW	2 cut(s)	470, 513
PctI	GAATGC	1 cut(s)	177
PdiI	GCCGGC	1 cut(s)	360
PdmI	GAANNNNTTC	2 cut(s)	187, 479
PkrI	GCNGC	4 cut(s)	334, 345, 353, 369
PleI	GAGTC	4 cut(s)	124, 391, 455, 634
PluTI	GGCGCC	1 cut(s)	516
PpsI	GAGTC	4 cut(s)	124, 391, 455, 634
PpuMI	RGGWCCY	1 cut(s)	382
Psp5II	RGGWCCY	1 cut(s)	382
PspFI	CCCAGC	1 cut(s)	430
PspN4I	GGNNCC	5 cut(s)	219, 297, 383, 384, 514
PspPI	GGNCC	3 cut(s)	234, 382, 450
PspPPI	RGGWCCY	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	468
RsaI	GTAC	1 cut(s)	578
RsaNI	GTAC	1 cut(s)	577
SaqAI	TTAA	1 cut(s)	23
SatI	GCNGC	4 cut(s)	333, 344, 352, 368
Sau3AI	GATC	1 cut(s)	468
Sau96I	GGNCC	3 cut(s)	234, 382, 450
SchI	GAGTC	4 cut(s)	125, 391, 455, 634
ScrFI	CCNGG	3 cut(s)	380, 386, 387
SetI	ASST	9 cut(s)	226, 239, 342, 405, 423, 432, 446, 531, 618
SfaNI	GCATC	4 cut(s)	249, 380, 492, 618
SfoI	GGCGCC	1 cut(s)	514
SfuI	TTCGAA	1 cut(s)	181
SinI	GGWCC	2 cut(s)	234, 382
SmaI	CCCGGG	1 cut(s)	387
Sse9I	AATT	2 cut(s)	278, 589
SsiI	CCGC	6 cut(s)	192, 251, 307, 332, 344, 662
SspDI	GGCGCC	1 cut(s)	512
SspMI	CTAG	1 cut(s)	39
StyD4I	CCNGG	3 cut(s)	378, 384, 385
TaaI	ACNGT	2 cut(s)	576, 658
TaiI	ACGT	1 cut(s)	618
TaqI	TCGA	4 cut(s)	119, 181, 473, 507
TasI	AATT	2 cut(s)	278, 589
TauI	GCSGC	2 cut(s)	335, 346
Tru1I	TTAA	1 cut(s)	23
Tru9I	TTAA	1 cut(s)	23
TseI	GCWGC	2 cut(s)	351, 367
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	227, 308, 594
TspMI	CCCGGG	1 cut(s)	385
VpaK11BI	GGWCC	2 cut(s)	234, 382
XapI	RAATTY	1 cut(s)	278
XcmI	CCANNNNNNNNNTGG	1 cut(s)	146
XmaI	CCCGGG	1 cut(s)	385
XmnI	GAANNNNTTC	2 cut(s)	187, 479
XspI	CTAG	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.