Rorug05G0094000

Peptidase, trypsin-like serine and cysteine proteases

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0009001
Physical Location & Seq
Reverse (-)
8386330 .. 8386947
618 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0094000.1

Sequence Viewer

Length: 405 bp
ATGAATGTGATCACTTTCTATGCTCCTGTCTTGTTCAAAACTGTAAGATTCGGAAGCAGTGCTTCTCTCGCTTCTGCTCTGATCACTAATGGGGTTAATTTTTTTGCAACTTTTGTTTCAATTGGTCTTGCTGACGAGTTTGGAAGAAGGTTCATTTTCTTGGAGGGTGGTTTGCAGATGTTCATAACTCAGGTCGTAGTTGGAAGTGCAATGGCTTGGAAATTTGGTACTGGTGGCAACCCTGGTGAACTATCCGAGGGTTTTGCTGCCACTCTGTATCTGCCGGAGACCAAAGCAGTTCCCATCGAAGAGATGGGAAGGGTGTTGGAGCAGCACCCTTTTTGGCGCAAGTATGTGGTTCAAGAGAAAGACATAGCCATGGGCAAGGCGGCACAGACTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

134

Amino Acids

14.64

Weight (kDa)

6.57

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sugar_tr PF00083 1 - 73 1.1e-13 Sugar (and other) transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 389
AcsI RAATTY 1 cut(s) 221
AfaI GTAC 1 cut(s) 229
AgsI TTSAA 3 cut(s) 37, 120, 362
AjnI CCWGG 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 281
ApeKI GCWGC 2 cut(s) 266, 331
ApoI RAATTY 1 cut(s) 221
AspLEI GCGC 1 cut(s) 348
AsuHPI GGTGA 1 cut(s) 257
BbvI GCAGC 2 cut(s) 253, 343
BccI CCATC 2 cut(s) 307, 311
BcgI CGANNNNNNTGC 2 cut(s) 245, 279
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 2 cut(s) 9, 81
BcoDI GTCTC 1 cut(s) 281
BisI GCNGC 3 cut(s) 267, 332, 390
BlsI GCNGC 3 cut(s) 268, 333, 391
Bme1390I CCNGG 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 243
BsaI GGTCTC 1 cut(s) 281
BsaJI CCNNGG 3 cut(s) 241, 255, 378
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 216
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 3 cut(s) 241, 255, 378
BseMI GCAATG 1 cut(s) 216
BseMII CTCAG 1 cut(s) 203
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 253, 343
BsiSI CCGG 1 cut(s) 284
BsmAI GTCTC 1 cut(s) 281
Bso31I GGTCTC 1 cut(s) 281
Bsp143I GATC 2 cut(s) 9, 81
Bsp19I CCATGG 1 cut(s) 378
BspACI CCGC 1 cut(s) 389
BspCNI CTCAG 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 216
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 241, 255, 378
BssMI GATC 2 cut(s) 9, 81
BssT1I CCWWGG 1 cut(s) 378
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 2 cut(s) 43, 400
Bst6I CTCTTC 1 cut(s) 303
BstDEI CTNAG 1 cut(s) 189
BstDSI CCRYGG 1 cut(s) 378
BstHHI GCGC 1 cut(s) 348
BstKTI GATC 2 cut(s) 12, 84
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 2 cut(s) 9, 81
BstMWI GCNNNNNNNGC 1 cut(s) 68
BstNI CCWGG 1 cut(s) 243
BstSCI CCNGG 1 cut(s) 241
BstV1I GCAGC 2 cut(s) 253, 343
BtgI CCRYGG 1 cut(s) 378
BtsI GCAGTG 1 cut(s) 64
BtsIMutI CAGTG 1 cut(s) 64
CfoI GCGC 1 cut(s) 348
Csp6I GTAC 1 cut(s) 228
CviAII CATG 1 cut(s) 379
CviJI RGCY 2 cut(s) 215, 377
CviKI_1 RGCY 2 cut(s) 215, 377
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 1 cut(s) 189
DpnI GATC 2 cut(s) 11, 83
DpnII GATC 2 cut(s) 9, 81
Eam1104I CTCTTC 1 cut(s) 303
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 378
Eco31I GGTCTC 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 378
ErhI CCWWGG 1 cut(s) 378
FaeI CATG 1 cut(s) 382
FaiI YATR 5 cut(s) 21, 185, 354, 374, 380
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 1 cut(s) 378
FbaI TGATCA 2 cut(s) 9, 81
Fnu4HI GCNGC 3 cut(s) 267, 332, 390
Fsp4HI GCNGC 3 cut(s) 267, 332, 390
GlaI GCGC 1 cut(s) 347
GluI GCNGC 3 cut(s) 267, 332, 390
HapII CCGG 1 cut(s) 284
HhaI GCGC 1 cut(s) 348
Hin1II CATG 1 cut(s) 382
Hin6I GCGC 1 cut(s) 346
HinP1I GCGC 1 cut(s) 346
HinfI GANTC 1 cut(s) 48
HpaII CCGG 1 cut(s) 284
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 248
Hpy188I TCNGA 3 cut(s) 53, 81, 256
Hpy188III TCNNGA 1 cut(s) 362
Hpy8I GTNNAC 1 cut(s) 248
HpyAV CCTTC 2 cut(s) 141, 312
HpyCH4III ACNGT 2 cut(s) 43, 400
HpyCH4V TGCA 3 cut(s) 107, 175, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 68
HpyF3I CTNAG 1 cut(s) 189
Hsp92II CATG 1 cut(s) 382
HspAI GCGC 1 cut(s) 346
Ksp22I TGATCA 2 cut(s) 9, 81
Kzo9I GATC 2 cut(s) 9, 81
LmnI GCTCC 2 cut(s) 28, 328
LpnPI CCDG 6 cut(s) 39, 176, 216, 228, 255, 297
Lsp1109I GCAGC 2 cut(s) 253, 343
MalI GATC 2 cut(s) 11, 83
MboI GATC 2 cut(s) 9, 81
MboII GAAGA 2 cut(s) 156, 320
MfeI CAATTG 1 cut(s) 120
MluCI AATT 3 cut(s) 97, 120, 221
MmeI TCCRAC 2 cut(s) 181, 306
MnlI CCTC 2 cut(s) 157, 250
MseI TTAA 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 377
MspI CCGG 1 cut(s) 284
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 1 cut(s) 120
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 1 cut(s) 68
NcoI CCATGG 1 cut(s) 378
NdeII GATC 2 cut(s) 9, 81
NlaIII CATG 1 cut(s) 382
PfeI GAWTC 1 cut(s) 48
PkrI GCNGC 3 cut(s) 268, 333, 391
Psp6I CCWGG 1 cut(s) 241
PspGI CCWGG 1 cut(s) 241
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 1 cut(s) 377
SaqAI TTAA 1 cut(s) 96
SatI GCNGC 3 cut(s) 267, 332, 390
Sau3AI GATC 2 cut(s) 9, 81
ScrFI CCNGG 1 cut(s) 243
SetI ASST 2 cut(s) 152, 195
SmiMI CAYNNNNRTG 1 cut(s) 377
Sse9I AATT 3 cut(s) 97, 120, 221
SsiI CCGC 1 cut(s) 389
StyD4I CCNGG 1 cut(s) 241
StyI CCWWGG 1 cut(s) 378
TaaI ACNGT 2 cut(s) 43, 400
TaqI TCGA 1 cut(s) 306
TasI AATT 3 cut(s) 97, 120, 221
TauI GCSGC 1 cut(s) 392
TfiI GAWTC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TscAI CASTG 1 cut(s) 64
TseI GCWGC 2 cut(s) 266, 331
TspDTI ATGAA 3 cut(s) 17, 142, 172
TspRI CASTG 1 cut(s) 64
XapI RAATTY 1 cut(s) 221
XcmI CCANNNNNNNNNTGG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.