Rorug05G0151700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0017788
Physical Location & Seq
Reverse (-)
14029899 .. 14036672
6774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0151700.1

Sequence Viewer

Length: 894 bp
ATGGAGTCACCATTCAAGGCGGAGATACTGAAGGGCAAGGTGGCGTTGTTGACCGGAGGAGCCTCGGGAATTGGGTACGAGATATCAGTTCAGTTGGGCAAACATGGAGCCTCCATTGCCGTCTTGGGTCGTCGTAAAAACGTCATCGACTCTGCTGTTGAATCCCTTCACTCCCTTGGCATTCCTGCTATCGGACTTGTGGGTGATGTTCGCAAAAGAGATGATGCAGTTAGAGTTTTGGAATCAACTGTCAAGCATTTTGGTAGGCTCGATATCCTTGTGAATGCTGCTGCTGGCAATTTCCTTGTCCCGTCTGAGGATCTATCCCCAAATGGATTTCGAACAGTTTTAGATATAGATGCTGTTGGCACCTTTACGATGTGTCATGAAGCACTCAAGTATCTCAAGAAGGGGGCACCAGGGAAGGACTCATCTGTCGGTGGAACAATAATAAACATAAGTGCGACTTTGCATTATACAGCTACTTGGTATCAAATTCATGTATCTGCAGCAAAGGCTGCTGTTGATAGCATTACAAGAAGCTTGGCATTGGAATGGGGCACAGATTATGATATCAGAGTCAATGGTATTGCGCCAGGACCTATTGAAGACACTGCTGGCTTTAGTAAACTCTTACCTCAGGAGATATTGAGCAAATTTAAGGTGAATGCTCCTACAACAAAAGTAGGACAGAAATGGGATATTGCTATGGCTGCAGTATATCTTGCGTCTACCGCAGGGAAATACATCAATGGAACAACATTGGTTGTAGATGGGGCAGATTGGTTGACCAAACCATCCCATCTTCCAAAAGAGACGGTAAAGCAACTGTCCCGAGCTGTGGAGCGAAGGTCTAGAAATGAACCAGTTGGCATTCCAAAGAGCAAGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

31.67

Weight (kDa)

9.33

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SDR PF23441 11 - 262 8.5e-07 SDR-like rossmann domain
adh_short PF00106 13 - 210 1.7e-39 short chain dehydrogenase
KR PF08659 15 - 134 9.2e-07 KR domain
adh_short_C2 PF13561 21 - 259 2.5e-46 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 434
AccB1I GGYRCC 2 cut(s) 368, 415
AccI GTMKAC 1 cut(s) 731
AciI CCGC 2 cut(s) 20, 735
AclWI GGATC 1 cut(s) 327
AcsI RAATTY 2 cut(s) 495, 656
AcuI CTGAAG 1 cut(s) 50
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 3 cut(s) 191, 316, 841
AgsI TTSAA 3 cut(s) 16, 161, 608
AjnI CCWGG 2 cut(s) 418, 595
AluBI AGCT 4 cut(s) 482, 543, 839, 889
AluI AGCT 4 cut(s) 482, 543, 839, 889
Alw26I GTCTC 1 cut(s) 809
AlwI GGATC 1 cut(s) 327
Ama87I CYCGRG 2 cut(s) 64, 834
ApeKI GCWGC 5 cut(s) 287, 290, 509, 518, 713
ApoI RAATTY 2 cut(s) 495, 656
Asp700I GAANNNNTTC 1 cut(s) 165
AspLEI GCGC 1 cut(s) 595
AspS9I GGNCC 1 cut(s) 599
AsuHPI GGTGA 2 cut(s) 215, 676
AsuII TTCGAA 1 cut(s) 340
AvaI CYCGRG 2 cut(s) 64, 834
AvaII GGWCC 1 cut(s) 599
AxyI CCTNAGG 1 cut(s) 639
BaeGI GKGCMC 2 cut(s) 418, 563
BaeI ACNNNNGTAYC 2 cut(s) 383, 416
BanI GGYRCC 2 cut(s) 368, 415
BbsI GAAGAC 1 cut(s) 615
BbvI GCAGC 5 cut(s) 274, 277, 505, 521, 700
BccI CCATC 3 cut(s) 767, 805, 810
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 2 cut(s) 420, 597
BcoDI GTCTC 1 cut(s) 809
BfaI CTAG 1 cut(s) 855
BfmI CTRYAG 2 cut(s) 507, 714
BisI GCNGC 5 cut(s) 288, 291, 510, 519, 714
BlsI GCNGC 5 cut(s) 289, 292, 511, 520, 715
Bme1390I CCNGG 2 cut(s) 420, 597
Bme18I GGWCC 1 cut(s) 599
BmeT110I CYCGRG 2 cut(s) 64, 834
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 4 cut(s) 61, 109, 370, 417
BmrFI CCNGG 2 cut(s) 420, 597
BmsI GCATC 2 cut(s) 214, 349
BpiI GAAGAC 1 cut(s) 615
Bpu14I TTCGAA 1 cut(s) 340
BpuEI CTTGAG 2 cut(s) 380, 389
BsaJI CCNNGG 3 cut(s) 63, 175, 419
BsaWI WCCGGW 1 cut(s) 53
BsaXI ACNNNNNCTCC 2 cut(s) 836, 866
Bsc4I CCNNNNNNNGG 3 cut(s) 191, 316, 841
Bse1I ACTGG 1 cut(s) 866
Bse21I CCTNAGG 1 cut(s) 639
Bse3DI GCAATG 1 cut(s) 114
BseBI CCWGG 2 cut(s) 420, 597
BseDI CCNNGG 3 cut(s) 63, 175, 419
BseGI GGATG 1 cut(s) 797
BseLI CCNNNNNNNGG 3 cut(s) 191, 316, 841
BseMI GCAATG 1 cut(s) 114
BseMII CTCAG 2 cut(s) 306, 653
BseNI ACTGG 1 cut(s) 866
BseRI GAGGAG 1 cut(s) 72
BseSI GKGCMC 2 cut(s) 418, 563
BseXI GCAGC 5 cut(s) 274, 277, 505, 521, 700
BshNI GGYRCC 2 cut(s) 368, 415
BsiHKCI CYCGRG 2 cut(s) 64, 834
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 2 cut(s) 293, 817
BslI CCNNNNNNNGG 3 cut(s) 191, 316, 841
BsmAI GTCTC 1 cut(s) 809
BsmBI CGTCTC 1 cut(s) 809
BsmFI GGGAC 2 cut(s) 293, 817
BsmI GAATGC 4 cut(s) 180, 289, 673, 873
BsoBI CYCGRG 2 cut(s) 64, 834
Bsp119I TTCGAA 1 cut(s) 340
Bsp1286I GDGCHC 2 cut(s) 418, 563
Bsp143I GATC 1 cut(s) 319
BspACI CCGC 2 cut(s) 20, 735
BspCNI CTCAG 2 cut(s) 307, 652
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 4 cut(s) 61, 109, 370, 417
BspMAI CTGCAG 2 cut(s) 511, 718
BspPI GGATC 1 cut(s) 327
BspT104I TTCGAA 1 cut(s) 340
BspT107I GGYRCC 2 cut(s) 368, 415
BsrDI GCAATG 1 cut(s) 114
BsrI ACTGG 1 cut(s) 866
BssECI CCNNGG 3 cut(s) 63, 175, 419
BssMI GATC 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 175
Bst2UI CCWGG 2 cut(s) 420, 597
Bst4CI ACNGT 4 cut(s) 250, 346, 820, 831
BstAPI GCANNNNNTGC 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 340
BstC8I GCNNGC 3 cut(s) 295, 619, 887
BstDEI CTNAG 2 cut(s) 315, 639
BstF5I GGATG 1 cut(s) 797
BstHHI GCGC 1 cut(s) 595
BstKTI GATC 1 cut(s) 322
BstMAI GTCTC 1 cut(s) 809
BstMBI GATC 1 cut(s) 319
BstMWI GCNNNNNNNGC 5 cut(s) 116, 515, 518, 713, 734
BstNI CCWGG 2 cut(s) 420, 597
BstSCI CCNGG 2 cut(s) 418, 595
BstSFI CTRYAG 2 cut(s) 507, 714
BstSLI GKGCMC 2 cut(s) 418, 563
BstV1I GCAGC 5 cut(s) 274, 277, 505, 521, 700
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 1 cut(s) 319
BstYI RGATCY 1 cut(s) 319
Bsu36I CCTNAGG 1 cut(s) 639
BtsCI GGATG 1 cut(s) 797
BtsI GCAGTG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 612
Cac8I GCNNGC 3 cut(s) 295, 619, 887
CciI TCATGA 1 cut(s) 385
CfoI GCGC 1 cut(s) 595
Cfr13I GGNCC 1 cut(s) 599
CseI GACGC 1 cut(s) 717
Csp6I GTAC 1 cut(s) 76
CviAII CATG 3 cut(s) 104, 386, 500
CviQI GTAC 1 cut(s) 76
DdeI CTNAG 2 cut(s) 315, 639
DpnI GATC 1 cut(s) 321
DpnII GATC 1 cut(s) 319
DrdI GACNNNNNNGTC 1 cut(s) 434
DseDI GACNNNNNNGTC 1 cut(s) 434
EciI GGCGGA 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 175
Eco32I GATATC 3 cut(s) 84, 274, 574
Eco47I GGWCC 1 cut(s) 599
Eco57I CTGAAG 1 cut(s) 50
Eco81I CCTNAGG 1 cut(s) 639
Eco88I CYCGRG 2 cut(s) 64, 834
EcoO109I RGGNCCY 1 cut(s) 599
EcoRII CCWGG 2 cut(s) 418, 595
EcoRV GATATC 3 cut(s) 84, 274, 574
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
Esp3I CGTCTC 1 cut(s) 809
FaeI CATG 3 cut(s) 107, 389, 503
FaiI YATR 9 cut(s) 105, 356, 387, 458, 477, 501, 570, 710, 721
FalI AAGNNNNNCTT 2 cut(s) 451, 483
FaqI GGGAC 2 cut(s) 293, 817
FatI CATG 3 cut(s) 103, 385, 499
FblI GTMKAC 1 cut(s) 731
Fnu4HI GCNGC 5 cut(s) 288, 291, 510, 519, 714
FokI GGATG 1 cut(s) 784
Fsp4HI GCNGC 5 cut(s) 288, 291, 510, 519, 714
FspBI CTAG 1 cut(s) 855
GlaI GCGC 1 cut(s) 594
GluI GCNGC 5 cut(s) 288, 291, 510, 519, 714
HapII CCGG 1 cut(s) 54
HgaI GACGC 1 cut(s) 717
HhaI GCGC 1 cut(s) 595
Hin1II CATG 3 cut(s) 107, 389, 503
Hin6I GCGC 1 cut(s) 593
HinP1I GCGC 1 cut(s) 593
HincII GTYRAC 2 cut(s) 51, 789
HindII GTYRAC 2 cut(s) 51, 789
HindIII AAGCTT 2 cut(s) 541, 887
HinfI GANTC 6 cut(s) 5, 149, 161, 242, 428, 579
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 215, 676
Hpy166II GTNNAC 4 cut(s) 51, 629, 732, 789
Hpy188I TCNGA 3 cut(s) 194, 316, 578
Hpy188III TCNNGA 6 cut(s) 66, 386, 406, 641, 834, 855
Hpy8I GTNNAC 4 cut(s) 51, 629, 732, 789
Hpy99I CGWCG 1 cut(s) 135
HpyAV CCTTC 5 cut(s) 25, 176, 403, 418, 843
HpyCH4III ACNGT 4 cut(s) 250, 346, 820, 831
HpyCH4IV ACGT 1 cut(s) 141
HpyCH4V TGCA 4 cut(s) 227, 472, 509, 716
HpyF10VI GCNNNNNNNGC 5 cut(s) 116, 515, 518, 713, 734
HpyF3I CTNAG 2 cut(s) 315, 639
HpySE526I ACGT 1 cut(s) 141
Hsp92II CATG 3 cut(s) 107, 389, 503
HspAI GCGC 1 cut(s) 593
Kzo9I GATC 1 cut(s) 319
LmnI GCTCC 4 cut(s) 59, 107, 676, 844
Lsp1109I GCAGC 5 cut(s) 274, 277, 505, 521, 700
LweI GCATC 2 cut(s) 214, 349
MaeI CTAG 1 cut(s) 855
MaeII ACGT 1 cut(s) 141
MaeIII GTNAC 1 cut(s) 6
MalI GATC 1 cut(s) 321
MboI GATC 1 cut(s) 319
MboII GAAGA 2 cut(s) 620, 797
MflI RGATCY 1 cut(s) 319
MhlI GDGCHC 2 cut(s) 418, 563
MluCI AATT 4 cut(s) 69, 298, 495, 656
MlyI GAGTC 4 cut(s) 14, 143, 422, 588
MnlI CCTC 5 cut(s) 50, 73, 121, 310, 648
MroXI GAANNNNTTC 1 cut(s) 165
MseI TTAA 2 cut(s) 660, 892
MslI CAYNNNNRTG 1 cut(s) 553
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 2 cut(s) 420, 597
Mva1269I GAATGC 4 cut(s) 180, 289, 673, 873
MvaI CCWGG 2 cut(s) 420, 597
MwoI GCNNNNNNNGC 5 cut(s) 116, 515, 518, 713, 734
NdeII GATC 1 cut(s) 319
NlaIII CATG 3 cut(s) 107, 389, 503
NlaIV GGNNCC 4 cut(s) 61, 109, 370, 417
NmuCI GTSAC 1 cut(s) 6
NspV TTCGAA 1 cut(s) 340
PagI TCATGA 1 cut(s) 385
PctI GAATGC 4 cut(s) 180, 289, 673, 873
PdmI GAANNNNTTC 1 cut(s) 165
PfeI GAWTC 2 cut(s) 161, 242
PkrI GCNGC 5 cut(s) 289, 292, 511, 520, 715
PleI GAGTC 4 cut(s) 13, 143, 422, 587
PpsI GAGTC 4 cut(s) 13, 143, 422, 587
PpuMI RGGWCCY 1 cut(s) 599
Psp5II RGGWCCY 1 cut(s) 599
Psp6I CCWGG 2 cut(s) 418, 595
PspGI CCWGG 2 cut(s) 418, 595
PspN4I GGNNCC 4 cut(s) 61, 109, 370, 417
PspPI GGNCC 1 cut(s) 599
PspPPI RGGWCCY 1 cut(s) 599
PstI CTGCAG 2 cut(s) 511, 718
PsuI RGATCY 1 cut(s) 319
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
RseI CAYNNNNRTG 1 cut(s) 553
SaqAI TTAA 2 cut(s) 660, 892
SatI GCNGC 5 cut(s) 288, 291, 510, 519, 714
Sau3AI GATC 1 cut(s) 319
Sau96I GGNCC 1 cut(s) 599
SchI GAGTC 4 cut(s) 14, 143, 422, 588
ScrFI CCNGG 2 cut(s) 420, 597
SduI GDGCHC 2 cut(s) 418, 563
SfaNI GCATC 2 cut(s) 214, 349
SfcI CTRYAG 2 cut(s) 507, 714
SfuI TTCGAA 1 cut(s) 340
SinI GGWCC 1 cut(s) 599
SmiMI CAYNNNNRTG 1 cut(s) 553
SmlI CTYRAG 2 cut(s) 395, 404
SmoI CTYRAG 2 cut(s) 395, 404
Sse9I AATT 4 cut(s) 69, 298, 495, 656
SsiI CCGC 2 cut(s) 20, 735
SspMI CTAG 1 cut(s) 855
StyD4I CCNGG 2 cut(s) 418, 595
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 4 cut(s) 250, 346, 820, 831
TaiI ACGT 1 cut(s) 144
TaqI TCGA 3 cut(s) 147, 270, 340
TasI AATT 4 cut(s) 69, 298, 495, 656
TfiI GAWTC 2 cut(s) 161, 242
Tru1I TTAA 2 cut(s) 660, 892
Tru9I TTAA 2 cut(s) 660, 892
TscAI CASTG 1 cut(s) 619
TseFI GTSAC 1 cut(s) 6
TseI GCWGC 5 cut(s) 287, 290, 509, 518, 713
Tsp45I GTSAC 1 cut(s) 6
TspDTI ATGAA 3 cut(s) 402, 488, 876
TspRI CASTG 1 cut(s) 619
VpaK11BI GGWCC 1 cut(s) 599
XapI RAATTY 2 cut(s) 495, 656
XbaI TCTAGA 1 cut(s) 854
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmiI GTMKAC 1 cut(s) 731
XmnI GAANNNNTTC 1 cut(s) 165
XspI CTAG 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.