Rorug05G0201500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0019932
Physical Location & Seq
Forward (+)
19983250 .. 19984011
762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0201500.1

Sequence Viewer

Length: 612 bp
ATGGAAATGAGGCGATACCTACCTCAAAGGGGGGATGCGACTGACGGTCATACAGTCCCGGTGTGGACTCCACCGAAGAATGGCGCAAAGGGAGCTGCAAAGTCAGTACTAGATGCAACATTTGAACTAGAGGAAAACATAACTAACACACCAAATGGAGGTGCTAACCAGGCCATTGAGGTAACCGGATATGCCATTGGGAAGGCCGTTAAAGCCGTGTCTGCCAGCTCAAGCAGCCCTGGTGCACCACCAGCAAAAACTGACAGGAAAACTAAGGGTGAAGTTGCACATTCATATAAGGCCGTCGCATCTCCACATGAACGTGCCCTTTTCACTTACGCAATAGCGCACAATCTTCAACCGGACTACCCGAAGGGTGTGAACTATAAGGGAGACGGATTCAATGTCAACAAAATGACTAATGTGCCAGGTCCTTACATTCTGCTGAATCCTTTAGAGGTTGATGACAATCTTCTGATCAATTACATCTTCTTGGGGGGGAAGCAATACACGAAGGAGGAAGGAAGGTTAGGACACAATCTGTCAGCTCAGTTGAACGATGGTTTTTTCATATTGCGCATAAACTGGTTTAGAACCTGCTTAAGTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.16

Weight (kDa)

8.87

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019932)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0042551
rosa_multiflora Rmu_co8010648.1_g000001
rosa_rugosa Rorug05G0201500 Rorug05G0201900
rosa_samantha Rh5BG292000 Rh5DG301800
rosa_wichuraiana Rw5G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 578
Acc36I ACCTGC 1 cut(s) 605
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 3 cut(s) 29, 80, 158
AflII CTTAAG 1 cut(s) 601
AgsI TTSAA 4 cut(s) 125, 359, 403, 556
AhdI GACNNNNNGTC 1 cut(s) 45
AjnI CCWGG 3 cut(s) 168, 238, 427
AluBI AGCT 3 cut(s) 95, 228, 548
AluI AGCT 3 cut(s) 95, 228, 548
Alw21I GWGCWC 1 cut(s) 247
Alw26I GTCTC 1 cut(s) 387
Alw44I GTGCAC 1 cut(s) 243
AoxI GGCC 3 cut(s) 171, 204, 300
ApaLI GTGCAC 1 cut(s) 243
ApeKI GCWGC 2 cut(s) 95, 234
AspLEI GCGC 3 cut(s) 86, 349, 579
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 1 cut(s) 59
AsuHPI GGTGA 1 cut(s) 290
AvaII GGWCC 1 cut(s) 431
BaeGI GKGCMC 2 cut(s) 247, 328
Bbv12I GWGCWC 1 cut(s) 247
BbvI GCAGC 2 cut(s) 82, 246
BccI CCATC 1 cut(s) 554
BceAI ACGGC 3 cut(s) 191, 200, 287
BciT130I CCWGG 3 cut(s) 170, 240, 429
BclI TGATCA 1 cut(s) 477
BcnI CCSGG 1 cut(s) 59
BcoDI GTCTC 1 cut(s) 387
BfaI CTAG 2 cut(s) 110, 128
BfrI CTTAAG 1 cut(s) 601
BfuAI ACCTGC 1 cut(s) 605
BisI GCNGC 2 cut(s) 96, 235
BlsI GCNGC 2 cut(s) 97, 236
BmcAI AGTACT 1 cut(s) 108
Bme1390I CCNGG 4 cut(s) 59, 170, 240, 429
Bme18I GGWCC 1 cut(s) 431
BmeRI GACNNNNNGTC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 431
BmrFI CCNGG 4 cut(s) 59, 170, 240, 429
BmsI GCATC 3 cut(s) 25, 103, 317
BpuEI CTTGAG 1 cut(s) 214
BpuMI CCSGG 1 cut(s) 59
BsaBI GATNNNNATC 1 cut(s) 468
BsaJI CCNNGG 1 cut(s) 238
BsaWI WCCGGW 2 cut(s) 185, 361
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 80, 158
Bse1I ACTGG 1 cut(s) 590
Bse8I GATNNNNATC 1 cut(s) 468
BseBI CCWGG 3 cut(s) 170, 240, 429
BseDI CCNNGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 40
BseJI GATNNNNATC 1 cut(s) 468
BseLI CCNNNNNNNGG 3 cut(s) 29, 80, 158
BseMII CTCAG 1 cut(s) 563
BseNI ACTGG 1 cut(s) 590
BseSI GKGCMC 2 cut(s) 247, 328
BseXI GCAGC 2 cut(s) 82, 246
BshFI GGCC 3 cut(s) 173, 206, 302
BsiHKAI GWGCWC 1 cut(s) 247
BsiSI CCGG 3 cut(s) 59, 186, 362
BslFI GGGAC 1 cut(s) 41
BslI CCNNNNNNNGG 3 cut(s) 29, 80, 158
BsmAI GTCTC 1 cut(s) 387
BsmBI CGTCTC 1 cut(s) 387
BsmFI GGGAC 1 cut(s) 41
BsnI GGCC 3 cut(s) 173, 206, 302
Bsp1286I GDGCHC 2 cut(s) 247, 328
Bsp143I GATC 1 cut(s) 477
BspANI GGCC 3 cut(s) 173, 206, 302
BspCNI CTCAG 1 cut(s) 562
BspMI ACCTGC 1 cut(s) 605
BspTI CTTAAG 1 cut(s) 601
BsrI ACTGG 1 cut(s) 590
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 1 cut(s) 477
Bst2UI CCWGG 3 cut(s) 170, 240, 429
Bst4CI ACNGT 2 cut(s) 47, 55
BstAFI CTTAAG 1 cut(s) 601
BstC8I GCNNGC 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 273, 549
BstEII GGTNACC 1 cut(s) 181
BstF5I GGATG 1 cut(s) 40
BstHHI GCGC 3 cut(s) 86, 349, 579
BstKTI GATC 1 cut(s) 480
BstMAI GTCTC 1 cut(s) 387
BstMBI GATC 1 cut(s) 477
BstMWI GCNNNNNNNGC 6 cut(s) 92, 170, 212, 221, 234, 251
BstNI CCWGG 3 cut(s) 170, 240, 429
BstPI GGTNACC 1 cut(s) 181
BstSCI CCNGG 4 cut(s) 57, 168, 238, 427
BstSLI GKGCMC 2 cut(s) 247, 328
BstV1I GCAGC 2 cut(s) 82, 246
BsuRI GGCC 3 cut(s) 173, 206, 302
BtsCI GGATG 1 cut(s) 40
BveI ACCTGC 1 cut(s) 605
Cac8I GCNNGC 1 cut(s) 226
CfoI GCGC 3 cut(s) 86, 349, 579
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 1 cut(s) 107
CviAII CATG 1 cut(s) 317
CviJI RGCY 8 cut(s) 95, 173, 206, 215, 228, 237, 302, 548
CviKI_1 RGCY 8 cut(s) 95, 173, 206, 215, 228, 237, 302, 548
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 2 cut(s) 273, 549
DpnI GATC 1 cut(s) 479
DpnII GATC 1 cut(s) 477
DriI GACNNNNNGTC 1 cut(s) 45
Eam1105I GACNNNNNGTC 1 cut(s) 45
Eco47I GGWCC 1 cut(s) 431
Eco91I GGTNACC 1 cut(s) 181
EcoO109I RGGNCCY 1 cut(s) 431
EcoO65I GGTNACC 1 cut(s) 181
EcoRII CCWGG 3 cut(s) 168, 238, 427
Esp3I CGTCTC 1 cut(s) 387
FaeI CATG 1 cut(s) 320
FaiI YATR 9 cut(s) 51, 140, 192, 295, 297, 318, 387, 572, 581
FaqI GGGAC 1 cut(s) 41
FatI CATG 1 cut(s) 316
FbaI TGATCA 1 cut(s) 477
Fnu4HI GCNGC 2 cut(s) 96, 235
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 96, 235
FspBI CTAG 2 cut(s) 110, 128
FspI TGCGCA 1 cut(s) 578
GlaI GCGC 3 cut(s) 85, 348, 578
GluI GCNGC 2 cut(s) 96, 235
HaeIII GGCC 3 cut(s) 173, 206, 302
HapII CCGG 3 cut(s) 59, 186, 362
HhaI GCGC 3 cut(s) 86, 349, 579
Hin1II CATG 1 cut(s) 320
Hin6I GCGC 3 cut(s) 84, 347, 577
HinP1I GCGC 3 cut(s) 84, 347, 577
HincII GTYRAC 1 cut(s) 409
HindII GTYRAC 1 cut(s) 409
HinfI GANTC 3 cut(s) 67, 399, 448
HpaII CCGG 3 cut(s) 59, 186, 362
HphI GGTGA 1 cut(s) 290
Hpy166II GTNNAC 4 cut(s) 66, 245, 382, 409
Hpy188I TCNGA 1 cut(s) 477
Hpy8I GTNNAC 4 cut(s) 66, 245, 382, 409
Hpy99I CGWCG 1 cut(s) 308
HpyAV CCTTC 5 cut(s) 196, 367, 508, 515, 519
HpyCH4III ACNGT 2 cut(s) 47, 55
HpyCH4IV ACGT 1 cut(s) 322
HpyCH4V TGCA 4 cut(s) 98, 116, 245, 287
HpyF10VI GCNNNNNNNGC 6 cut(s) 92, 170, 212, 221, 234, 251
HpyF3I CTNAG 2 cut(s) 273, 549
HpySE526I ACGT 1 cut(s) 322
Hsp92II CATG 1 cut(s) 320
HspAI GCGC 3 cut(s) 84, 347, 577
Ksp22I TGATCA 1 cut(s) 477
Kzo9I GATC 1 cut(s) 477
LmnI GCTCC 1 cut(s) 92
Lsp1109I GCAGC 2 cut(s) 82, 246
LweI GCATC 3 cut(s) 25, 103, 317
MaeI CTAG 2 cut(s) 110, 128
MaeII ACGT 1 cut(s) 322
MaeIII GTNAC 1 cut(s) 181
MalI GATC 1 cut(s) 479
MboI GATC 1 cut(s) 477
MboII GAAGA 4 cut(s) 88, 347, 464, 481
MhlI GDGCHC 2 cut(s) 247, 328
MluCI AATT 1 cut(s) 481
MlyI GAGTC 1 cut(s) 61
MnlI CCTC 7 cut(s) 3, 33, 124, 152, 172, 451, 511
MseI TTAA 2 cut(s) 210, 602
MslI CAYNNNNRTG 1 cut(s) 321
MspCI CTTAAG 1 cut(s) 601
MspI CCGG 3 cut(s) 59, 186, 362
MspR9I CCNGG 4 cut(s) 59, 170, 240, 429
MvaI CCWGG 3 cut(s) 170, 240, 429
MwoI GCNNNNNNNGC 6 cut(s) 92, 170, 212, 221, 234, 251
NciI CCSGG 1 cut(s) 59
NdeII GATC 1 cut(s) 477
NlaIII CATG 1 cut(s) 320
NsbI TGCGCA 1 cut(s) 578
PfeI GAWTC 2 cut(s) 399, 448
PkrI GCNGC 2 cut(s) 97, 236
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
PpuMI RGGWCCY 1 cut(s) 431
Psp5II RGGWCCY 1 cut(s) 431
Psp6I CCWGG 3 cut(s) 168, 238, 427
PspEI GGTNACC 1 cut(s) 181
PspGI CCWGG 3 cut(s) 168, 238, 427
PspPI GGNCC 1 cut(s) 431
PspPPI RGGWCCY 1 cut(s) 431
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 2 cut(s) 210, 602
SatI GCNGC 2 cut(s) 96, 235
Sau3AI GATC 1 cut(s) 477
Sau96I GGNCC 1 cut(s) 431
ScaI AGTACT 1 cut(s) 108
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 4 cut(s) 59, 170, 240, 429
SduI GDGCHC 2 cut(s) 247, 328
SfaNI GCATC 3 cut(s) 25, 103, 317
SinI GGWCC 1 cut(s) 431
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 2 cut(s) 229, 601
SmoI CTYRAG 2 cut(s) 229, 601
Sse9I AATT 1 cut(s) 481
SspMI CTAG 2 cut(s) 110, 128
StyD4I CCNGG 4 cut(s) 57, 168, 238, 427
TaaI ACNGT 2 cut(s) 47, 55
TaiI ACGT 1 cut(s) 325
TasI AATT 1 cut(s) 481
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 2 cut(s) 399, 448
Tru1I TTAA 2 cut(s) 210, 602
Tru9I TTAA 2 cut(s) 210, 602
TseI GCWGC 2 cut(s) 95, 234
TspDTI ATGAA 3 cut(s) 282, 333, 559
TspGWI ACGGA 1 cut(s) 411
Vha464I CTTAAG 1 cut(s) 601
VneI GTGCAC 1 cut(s) 243
VpaK11BI GGWCC 1 cut(s) 431
XspI CTAG 2 cut(s) 110, 128
ZrmI AGTACT 1 cut(s) 108
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.