Rh5DG301800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
37920958 .. 37921293
336 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG301800.1

Sequence Viewer

Length: 336 bp
ATGCCTTATGCTCTCAATTTGACCACTCTGGTTGTGAGTTTCAACCGAAATCAAAATTACCCAGATTTCTTGGTTATAGGTTCTGGTCTGCAGCACATGCTTCATTTAACTAATGCATCCGATTATGGTGCTTCATTGCAATTCACTAAGGATGATGCTGGTTCTTTGGTCTCATTTGAGCAGCATGAAGAAGCAGTAATTACAGGGTCCGTGCTAGTCAGACCTTCGTCGCATCTCTTCTGGATTGGGATACCCACTTTGATCAACTCGATGCTGAATACGGATGAGAAGAGGGATAAGATAACTGATGTCTTGAGGGTTGGCTATGATGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.4

Weight (kDa)

4.98

Isoelectric Point (pI)

29.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019932)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0042551
rosa_multiflora Rmu_co8010648.1_g000001
rosa_rugosa Rorug05G0201500 Rorug05G0201900
rosa_samantha Rh5BG292000 Rh5DG301800
rosa_wichuraiana Rw5G026680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 43
Alw26I GTCTC 1 cut(s) 175
ApeKI GCWGC 2 cut(s) 91, 181
AspS9I GGNCC 1 cut(s) 207
AvaII GGWCC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 103, 193
BcgI CGANNNNNNTGC 2 cut(s) 110, 144
BciVI GTATCC 1 cut(s) 243
BclI TGATCA 1 cut(s) 261
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 215
BfmI CTRYAG 1 cut(s) 89
BfuI GTATCC 1 cut(s) 243
BisI GCNGC 2 cut(s) 92, 182
BlsI GCNGC 2 cut(s) 93, 183
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 1 cut(s) 208
BmsI GCATC 4 cut(s) 125, 145, 241, 261
BoxI GACNNNNGTC 1 cut(s) 226
BpuEI CTTGAG 1 cut(s) 334
BsaI GGTCTC 1 cut(s) 175
Bse3DI GCAATG 1 cut(s) 134
BseGI GGATG 3 cut(s) 116, 157, 289
BseMI GCAATG 1 cut(s) 134
BseXI GCAGC 2 cut(s) 103, 193
BsmAI GTCTC 1 cut(s) 175
Bso31I GGTCTC 1 cut(s) 175
Bsp143I GATC 1 cut(s) 261
BspLI GGNNCC 1 cut(s) 208
BspMAI CTGCAG 1 cut(s) 93
BspTNI GGTCTC 1 cut(s) 175
BsrDI GCAATG 1 cut(s) 134
BssMI GATC 1 cut(s) 261
Bst6I CTCTTC 2 cut(s) 242, 284
BstAPI GCANNNNNTGC 1 cut(s) 97
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 3 cut(s) 116, 157, 289
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 100
BstPAI GACNNNNGTC 1 cut(s) 226
BstSFI CTRYAG 1 cut(s) 89
BstV1I GCAGC 2 cut(s) 103, 193
BsuI GTATCC 1 cut(s) 243
BtsCI GGATG 3 cut(s) 116, 157, 289
Cfr13I GGNCC 1 cut(s) 207
CspCI CAANNNNNGTGG 2 cut(s) 13, 48
CviAII CATG 2 cut(s) 97, 185
CviJI RGCY 1 cut(s) 324
CviKI_1 RGCY 1 cut(s) 324
DdeI CTNAG 1 cut(s) 147
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
Eam1104I CTCTTC 2 cut(s) 242, 284
EarI CTCTTC 2 cut(s) 242, 284
Eco31I GGTCTC 1 cut(s) 175
Eco47I GGWCC 1 cut(s) 207
EcoT22I ATGCAT 1 cut(s) 118
FaeI CATG 2 cut(s) 100, 188
FaiI YATR 6 cut(s) 9, 77, 98, 126, 186, 327
FatI CATG 2 cut(s) 96, 184
FbaI TGATCA 1 cut(s) 261
Fnu4HI GCNGC 2 cut(s) 92, 182
FokI GGATG 3 cut(s) 103, 164, 296
Fsp4HI GCNGC 2 cut(s) 92, 182
FspBI CTAG 1 cut(s) 215
GluI GCNGC 2 cut(s) 92, 182
Hin1II CATG 2 cut(s) 100, 188
Hpy188I TCNGA 2 cut(s) 121, 221
Hpy188III TCNNGA 2 cut(s) 241, 313
Hpy99I CGWCG 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 91, 116, 139
HpyF10VI GCNNNNNNNGC 1 cut(s) 97
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 2 cut(s) 100, 188
Ksp22I TGATCA 1 cut(s) 261
Kzo9I GATC 1 cut(s) 261
LpnPI CCDG 6 cut(s) 14, 69, 75, 144, 189, 226
Lsp1109I GCAGC 2 cut(s) 103, 193
LweI GCATC 4 cut(s) 125, 145, 241, 261
MaeI CTAG 1 cut(s) 215
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 3 cut(s) 200, 229, 301
MluCI AATT 4 cut(s) 16, 55, 140, 198
MnlI CCTC 2 cut(s) 285, 309
Mph1103I ATGCAT 1 cut(s) 118
MseI TTAA 1 cut(s) 107
MwoI GCNNNNNNNGC 1 cut(s) 97
NdeII GATC 1 cut(s) 261
NlaIII CATG 2 cut(s) 100, 188
NlaIV GGNNCC 1 cut(s) 208
NsiI ATGCAT 1 cut(s) 118
NspI RCATGY 1 cut(s) 100
PkrI GCNGC 2 cut(s) 93, 183
PshAI GACNNNNGTC 1 cut(s) 226
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 207
PstI CTGCAG 1 cut(s) 93
SaqAI TTAA 1 cut(s) 107
SatI GCNGC 2 cut(s) 92, 182
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 1 cut(s) 207
SetI ASST 2 cut(s) 82, 226
SfaNI GCATC 4 cut(s) 125, 145, 241, 261
SfcI CTRYAG 1 cut(s) 89
SinI GGWCC 1 cut(s) 207
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
Sse9I AATT 4 cut(s) 16, 55, 140, 198
SspMI CTAG 1 cut(s) 215
TaqI TCGA 1 cut(s) 269
TasI AATT 4 cut(s) 16, 55, 140, 198
Tru1I TTAA 1 cut(s) 107
Tru9I TTAA 1 cut(s) 107
TseI GCWGC 2 cut(s) 91, 181
TspDTI ATGAA 3 cut(s) 92, 123, 201
TspGWI ACGGA 2 cut(s) 199, 296
VpaK11BI GGWCC 1 cut(s) 207
XceI RCATGY 1 cut(s) 100
XspI CTAG 1 cut(s) 215
Zsp2I ATGCAT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.