Rorug05G0268900

ABC transporter G family member

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
30362292 .. 30365118
2827 bp
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UTR
Exon/CDS
Intron
Rorug05G0268900.1

Sequence Viewer

Length: 528 bp
ATGGCTTCCATTCCATGTACTACTGCTCCTACCCACTCATGCTTCGCCTCCAACTCCTTCAATTCTTCAACTTTTTCAGTCAAACTCAATACCCAGTTTCTGGGTACCCGAAGTAGGCTGGGTCGGGTCAGACCCTTTGGTCTTGGACCCTCCAATGGCTCCAGAGCCAAGTGCTGGTTCAAGTTCGGTAAAAACGGTATAGATGCTGAGGGTGCTGGAATCTATGGAAGCCAATCCCGTGATGATTATGATAAAGATGATGTTGAGCAGTATTTCAACTACATGGGAATGCTTGCTGTTGAGGGTACGTATGATAAGATGAATGCTCTTTTAAGCCAAAATATCCACCCAGTAGATATTCTATTGTTGATGGCTGCCTCAGAAGGTGACAAGCCGAAAATTGAAGAACTTTTAAGAGCCGGAGCTAGTTACTCTGTTAAAGATGCTGATGGGCGAACAGCTCTTGATAGGGCTGCAAGTGATGAAATTAAAGACTTCATTCTTGGTTTTTCAGTTCAAAAAGCATGA

Protein Analysis

175

Amino Acids

19.04

Weight (kDa)

6.11

Isoelectric Point (pI)

40.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010714)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 138
Acc65I GGTACC 1 cut(s) 104
AccB1I GGYRCC 1 cut(s) 104
AccB7I CCANNNNNTGG 2 cut(s) 100, 174
AfaI GTAC 3 cut(s) 19, 106, 307
AfiI CCNNNNNNNGG 4 cut(s) 100, 114, 155, 174
AgsI TTSAA 6 cut(s) 61, 69, 181, 277, 404, 518
AjuI GAANNNNNNNTTGG 2 cut(s) 161, 193
AluBI AGCT 2 cut(s) 425, 461
AluI AGCT 2 cut(s) 425, 461
AlwNI CAGNNNCTG 1 cut(s) 100
ApeKI GCWGC 2 cut(s) 374, 473
Asp718I GGTACC 1 cut(s) 104
AspS9I GGNCC 1 cut(s) 146
AsuHPI GGTGA 1 cut(s) 398
AvaII GGWCC 1 cut(s) 146
BanI GGYRCC 1 cut(s) 104
BbvCI CCTCAGC 1 cut(s) 207
BbvI GCAGC 2 cut(s) 361, 460
BccI CCATC 2 cut(s) 364, 443
BfaI CTAG 1 cut(s) 426
BisI GCNGC 2 cut(s) 375, 474
BlsI GCNGC 2 cut(s) 376, 475
Bme18I GGWCC 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 3 cut(s) 106, 148, 160
BmrI ACTGGG 2 cut(s) 88, 344
BmsI GCATC 2 cut(s) 193, 433
BmuI ACTGGG 2 cut(s) 88, 344
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 207
BsaAI YACGTR 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 10, 40
Bsc4I CCNNNNNNNGG 4 cut(s) 100, 114, 155, 174
Bse1I ACTGG 2 cut(s) 94, 350
BseLI CCNNNNNNNGG 4 cut(s) 100, 114, 155, 174
BseMII CTCAG 2 cut(s) 198, 393
BseNI ACTGG 2 cut(s) 94, 350
BseXI GCAGC 2 cut(s) 361, 460
BseYI CCCAGC 1 cut(s) 118
BshNI GGYRCC 1 cut(s) 104
BsiSI CCGG 1 cut(s) 420
BslI CCNNNNNNNGG 4 cut(s) 100, 114, 155, 174
BsmI GAATGC 2 cut(s) 294, 328
BspCNI CTCAG 2 cut(s) 199, 392
BspLI GGNNCC 3 cut(s) 106, 148, 160
BspT107I GGYRCC 1 cut(s) 104
BsrI ACTGG 2 cut(s) 94, 350
Bst4CI ACNGT 1 cut(s) 197
BstBAI YACGTR 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 207, 379
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstSNI TACGTA 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 361, 460
Cac8I GCNNGC 1 cut(s) 294
CaiI CAGNNNCTG 1 cut(s) 100
Cfr13I GGNCC 1 cut(s) 146
Csp6I GTAC 3 cut(s) 18, 105, 306
CviAII CATG 4 cut(s) 15, 39, 283, 525
CviQI GTAC 3 cut(s) 18, 105, 306
DdeI CTNAG 2 cut(s) 207, 379
DrdI GACNNNNNNGTC 1 cut(s) 138
DseDI GACNNNNNNGTC 1 cut(s) 138
Eco105I TACGTA 1 cut(s) 309
Eco47I GGWCC 1 cut(s) 146
FaeI CATG 4 cut(s) 18, 42, 286, 528
FaiI YATR 8 cut(s) 16, 40, 200, 225, 249, 284, 312, 526
FatI CATG 4 cut(s) 14, 38, 282, 524
Fnu4HI GCNGC 2 cut(s) 375, 474
Fsp4HI GCNGC 2 cut(s) 375, 474
FspBI CTAG 1 cut(s) 426
GluI GCNGC 2 cut(s) 375, 474
GsaI CCCAGC 1 cut(s) 122
GsuI CTGGAG 1 cut(s) 145
HapII CCGG 1 cut(s) 420
Hin1II CATG 4 cut(s) 18, 42, 286, 528
HinfI GANTC 1 cut(s) 219
HpaII CCGG 1 cut(s) 420
HphI GGTGA 1 cut(s) 398
Hpy188I TCNGA 2 cut(s) 131, 382
Hpy188III TCNNGA 2 cut(s) 162, 464
HpyAV CCTTC 2 cut(s) 67, 377
HpyCH4III ACNGT 1 cut(s) 197
HpyCH4IV ACGT 1 cut(s) 308
HpyCH4V TGCA 1 cut(s) 476
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 2 cut(s) 207, 379
HpySE526I ACGT 1 cut(s) 308
Hsp92II CATG 4 cut(s) 18, 42, 286, 528
KpnI GGTACC 1 cut(s) 108
LmnI GCTCC 3 cut(s) 31, 164, 422
LpnPI CCDG 8 cut(s) 86, 104, 107, 160, 175, 201, 363, 433
Lsp1109I GCAGC 2 cut(s) 361, 460
LweI GCATC 2 cut(s) 193, 433
MaeI CTAG 1 cut(s) 426
MaeII ACGT 1 cut(s) 308
MaeIII GTNAC 2 cut(s) 386, 428
MboII GAAGA 2 cut(s) 57, 416
MluCI AATT 3 cut(s) 61, 399, 486
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 5 cut(s) 58, 160, 202, 295, 388
MseI TTAA 4 cut(s) 332, 413, 438, 489
MslI CAYNNNNRTG 1 cut(s) 287
MspI CCGG 1 cut(s) 420
Mva1269I GAATGC 2 cut(s) 294, 328
MwoI GCNNNNNNNGC 1 cut(s) 212
NlaIII CATG 4 cut(s) 18, 42, 286, 528
NlaIV GGNNCC 3 cut(s) 106, 148, 160
NmuCI GTSAC 1 cut(s) 386
PctI GAATGC 2 cut(s) 294, 328
PfeI GAWTC 1 cut(s) 219
PflMI CCANNNNNTGG 2 cut(s) 100, 174
PkrI GCNGC 2 cut(s) 376, 475
Ppu21I YACGTR 1 cut(s) 309
PspFI CCCAGC 1 cut(s) 118
PspN4I GGNNCC 3 cut(s) 106, 148, 160
PspPI GGNCC 1 cut(s) 146
PstNI CAGNNNCTG 1 cut(s) 100
RsaI GTAC 3 cut(s) 19, 106, 307
RsaNI GTAC 3 cut(s) 18, 105, 306
RseI CAYNNNNRTG 1 cut(s) 287
SaqAI TTAA 4 cut(s) 332, 413, 438, 489
SatI GCNGC 2 cut(s) 375, 474
Sau96I GGNCC 1 cut(s) 146
SetI ASST 4 cut(s) 311, 388, 427, 463
SfaNI GCATC 2 cut(s) 193, 433
SinI GGWCC 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 287
SnaBI TACGTA 1 cut(s) 309
Sse9I AATT 3 cut(s) 61, 399, 486
SspMI CTAG 1 cut(s) 426
TaaI ACNGT 1 cut(s) 197
TaiI ACGT 1 cut(s) 311
TasI AATT 3 cut(s) 61, 399, 486
TatI WGTACW 1 cut(s) 17
TfiI GAWTC 1 cut(s) 219
Tru1I TTAA 4 cut(s) 332, 413, 438, 489
Tru9I TTAA 4 cut(s) 332, 413, 438, 489
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 2 cut(s) 374, 473
Tsp45I GTSAC 1 cut(s) 386
TspDTI ATGAA 3 cut(s) 335, 487, 498
Van91I CCANNNNNTGG 2 cut(s) 100, 174
VpaK11BI GGWCC 1 cut(s) 146
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.