Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015852

Physical Location & Seq

Genomic Coordinates Reverse (-)

35983416 .. 35984198

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0307200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGGAGCTACAAACCCAGCAACAAATCGAGGATGGAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATCTCAATTTTGGGTCCACTGGTTCTACTGGTGCTGAACAAACTTCCATGGAACAACGAGGAGAGGATCACCAGGAGATTGAAACTCTTCCTTTGTTCCCAGTGCACGGTGAGGACGTCCTTGGAGACCCGAAGACTACTTCCGAGGGAGGTAGCGCATATGGCTACTATTCCAGTGGCTCGGGCGGTTACAACGGTGGCTCTCACGTTTCTCTTGAGCTCAGCCTCAATCCTTCCGGAGCTGCTAACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

199

Amino Acids

21.68

Weight (kDa)

5.07

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	30 - 91	1.5e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45010
malus_domestica	MD00G1032400.v1.1 MD11G1146500.v1.1
prunus_persica	Prupe.6G109600_v2.0.a1
pyrus_communis	pycom11g11950
rosa_chinensis	RchiOBHm_Chr5g0057441
rosa_laevigata	RLG00000035154
rosa_multiflora	Rmu_sc0003730.1_g000012
rosa_roxburghii	Rroxscaffold_1G00023010
rosa_rugosa	Rorug05G0307200 Rorug05G0307300
rosa_samantha	Rh5AG375800 Rh5BG386600 Rh5DG400900
rosa_wichuraiana	Rw5G035480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	462
AccIII	TCCGGA	1 cut(s)	578
AciI	CCGC	1 cut(s)	528
AclWI	GGATC	4 cut(s)	141, 330, 343, 417
AcyI	GRCGYC	1 cut(s)	459
AfaI	GTAC	2 cut(s)	91, 328
AfiI	CCNNNNNNNGG	2 cut(s)	329, 449
AgsI	TTSAA	1 cut(s)	425
AhlI	ACTAGT	1 cut(s)	314
AjnI	CCWGG	3 cut(s)	92, 322, 414
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AloI	GAACNNNNNNTCC	2 cut(s)	304, 336
AluBI	AGCT	4 cut(s)	7, 199, 562, 584
AluI	AGCT	4 cut(s)	7, 199, 562, 584
Alw21I	GWGCWC	3 cut(s)	177, 450, 564
Alw26I	GTCTC	2 cut(s)	197, 462
Alw44I	GTGCAC	1 cut(s)	446
AlwI	GGATC	4 cut(s)	141, 330, 343, 417
Ama87I	CYCGRG	2 cut(s)	261, 523
Aor13HI	TCCGGA	1 cut(s)	578
ApaLI	GTGCAC	1 cut(s)	446
ApeKI	GCWGC	3 cut(s)	50, 293, 584
Asp700I	GAANNNNTTC	2 cut(s)	316, 429
AspLEI	GCGC	1 cut(s)	500
AspS9I	GGNCC	1 cut(s)	357
AsuC2I	CCSGG	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	404, 464
AvaI	CYCGRG	2 cut(s)	261, 523
AvaII	GGWCC	1 cut(s)	357
BaeGI	GKGCMC	3 cut(s)	164, 306, 450
BamHI	GGATCC	1 cut(s)	335
BanII	GRGCYC	2 cut(s)	262, 564
BauI	CACGAG	1 cut(s)	182
BbsI	GAAGAC	1 cut(s)	482
Bbv12I	GWGCWC	3 cut(s)	177, 450, 564
BbvI	GCAGC	3 cut(s)	62, 280, 571
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	72
BciT130I	CCWGG	3 cut(s)	94, 324, 416
BcnI	CCSGG	1 cut(s)	55
BcoDI	GTCTC	2 cut(s)	197, 462
BcuI	ACTAGT	1 cut(s)	314
BfaI	CTAG	1 cut(s)	315
BfmI	CTRYAG	1 cut(s)	168
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	3 cut(s)	51, 294, 585
BlpI	GCTNAGC	1 cut(s)	563
BlsI	GCNGC	3 cut(s)	52, 295, 586
Bme1390I	CCNGG	4 cut(s)	55, 94, 324, 416
Bme18I	GGWCC	1 cut(s)	357
BmeT110I	CYCGRG	2 cut(s)	261, 523
BmgT120I	GGNCC	1 cut(s)	357
BmiI	GGNNCC	3 cut(s)	245, 337, 358
BmrFI	CCNGG	4 cut(s)	55, 94, 324, 416
BmrI	ACTGGG	1 cut(s)	437
BmuI	ACTGGG	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	482
BpmI	CTGGAG	2 cut(s)	93, 179
Bpu1102I	GCTNAGC	1 cut(s)	563
BpuEI	CTTGAG	3 cut(s)	113, 282, 578
BpuMI	CCSGG	1 cut(s)	55
BsaHI	GRCGYC	1 cut(s)	459
BsaI	GGTCTC	1 cut(s)	462
BsaJI	CCNNGG	4 cut(s)	306, 390, 463, 486
BsaWI	WCCGGW	1 cut(s)	578
BsaXI	ACNNNNNCTCC	2 cut(s)	304, 334
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 449
Bse1I	ACTGG	6 cut(s)	205, 334, 367, 376, 443, 516
BseAI	TCCGGA	1 cut(s)	578
BseBI	CCWGG	3 cut(s)	94, 324, 416
BseDI	CCNNGG	4 cut(s)	306, 390, 463, 486
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	2 cut(s)	329, 449
BseMII	CTCAG	1 cut(s)	577
BseNI	ACTGG	6 cut(s)	205, 334, 367, 376, 443, 516
BseRI	GAGGAG	1 cut(s)	417
BseSI	GKGCMC	3 cut(s)	164, 306, 450
BseXI	GCAGC	3 cut(s)	62, 280, 571
BseYI	CCCAGC	1 cut(s)	15
BsiHKAI	GWGCWC	3 cut(s)	177, 450, 564
BsiHKCI	CYCGRG	2 cut(s)	261, 523
BsiSI	CCGG	2 cut(s)	54, 579
BslI	CCNNNNNNNGG	2 cut(s)	329, 449
BsmAI	GTCTC	2 cut(s)	197, 462
Bso31I	GGTCTC	1 cut(s)	462
BsoBI	CYCGRG	2 cut(s)	261, 523
Bsp1286I	GDGCHC	6 cut(s)	164, 177, 262, 306, 450, 564
Bsp13I	TCCGGA	1 cut(s)	578
Bsp143I	GATC	6 cut(s)	112, 133, 186, 335, 343, 409
Bsp1720I	GCTNAGC	1 cut(s)	563
Bsp19I	CCATGG	2 cut(s)	306, 390
BspACI	CCGC	1 cut(s)	528
BspCNI	CTCAG	1 cut(s)	576
BspEI	TCCGGA	1 cut(s)	578
BspLI	GGNNCC	3 cut(s)	245, 337, 358
BspPI	GGATC	4 cut(s)	141, 330, 343, 417
BspTNI	GGTCTC	1 cut(s)	462
BsrI	ACTGG	6 cut(s)	205, 334, 367, 376, 443, 516
BssECI	CCNNGG	4 cut(s)	306, 390, 463, 486
BssMI	GATC	6 cut(s)	112, 133, 186, 335, 343, 409
BssNI	GRCGYC	1 cut(s)	459
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	3 cut(s)	306, 390, 463
Bst2BI	CACGAG	1 cut(s)	182
Bst2UI	CCWGG	3 cut(s)	94, 324, 416
Bst4CI	ACNGT	2 cut(s)	452, 539
Bst6I	CTCTTC	2 cut(s)	272, 435
BstACI	GRCGYC	1 cut(s)	459
BstDEI	CTNAG	2 cut(s)	563, 597
BstDSI	CCRYGG	2 cut(s)	306, 390
BstF5I	GGATG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	500
BstKTI	GATC	6 cut(s)	115, 136, 189, 338, 346, 412
BstMAI	GTCTC	2 cut(s)	197, 462
BstMBI	GATC	6 cut(s)	112, 133, 186, 335, 343, 409
BstMWI	GCNNNNNNNGC	2 cut(s)	504, 593
BstNI	CCWGG	3 cut(s)	94, 324, 416
BstSCI	CCNGG	4 cut(s)	53, 92, 322, 414
BstSFI	CTRYAG	1 cut(s)	168
BstSLI	GKGCMC	3 cut(s)	164, 306, 450
BstV1I	GCAGC	3 cut(s)	62, 280, 571
BstV2I	GAAGAC	1 cut(s)	482
BstX2I	RGATCY	3 cut(s)	133, 186, 335
BstYI	RGATCY	3 cut(s)	133, 186, 335
BtgI	CCRYGG	2 cut(s)	306, 390
BtsCI	GGATG	1 cut(s)	37
BtsIMutI	CAGTG	3 cut(s)	360, 450, 523
CfoI	GCGC	1 cut(s)	500
Cfr13I	GGNCC	1 cut(s)	357
CsiI	ACCWGGT	1 cut(s)	92
Csp6I	GTAC	2 cut(s)	90, 327
CviAII	CATG	2 cut(s)	307, 391
CviQI	GTAC	2 cut(s)	90, 327
DdeI	CTNAG	2 cut(s)	563, 597
DpnI	GATC	6 cut(s)	114, 135, 188, 337, 345, 411
DpnII	GATC	6 cut(s)	112, 133, 186, 335, 343, 409
Eam1104I	CTCTTC	2 cut(s)	272, 435
EarI	CTCTTC	2 cut(s)	272, 435
Ecl136II	GAGCTC	1 cut(s)	562
Eco130I	CCWWGG	3 cut(s)	306, 390, 463
Eco24I	GRGCYC	2 cut(s)	262, 564
Eco31I	GGTCTC	1 cut(s)	462
Eco47I	GGWCC	1 cut(s)	357
Eco53kI	GAGCTC	1 cut(s)	562
Eco88I	CYCGRG	2 cut(s)	261, 523
EcoICRI	GAGCTC	1 cut(s)	562
EcoRII	CCWGG	3 cut(s)	92, 322, 414
EcoT14I	CCWWGG	3 cut(s)	306, 390, 463
EcoT38I	GRGCYC	2 cut(s)	262, 564
ErhI	CCWWGG	3 cut(s)	306, 390, 463
FaeI	CATG	2 cut(s)	310, 394
FaiI	YATR	5 cut(s)	210, 308, 392, 502, 504
FatI	CATG	2 cut(s)	306, 390
FauNDI	CATATG	1 cut(s)	502
Fnu4HI	GCNGC	3 cut(s)	51, 294, 585
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	2 cut(s)	262, 564
Fsp4HI	GCNGC	3 cut(s)	51, 294, 585
FspBI	CTAG	1 cut(s)	315
GlaI	GCGC	1 cut(s)	499
GluI	GCNGC	3 cut(s)	51, 294, 585
GsaI	CCCAGC	1 cut(s)	19
GsuI	CTGGAG	2 cut(s)	93, 179
HapII	CCGG	2 cut(s)	54, 579
HhaI	GCGC	1 cut(s)	500
Hin1I	GRCGYC	1 cut(s)	459
Hin1II	CATG	2 cut(s)	310, 394
Hin6I	GCGC	1 cut(s)	498
HinP1I	GCGC	1 cut(s)	498
HinfI	GANTC	2 cut(s)	100, 123
HpaII	CCGG	2 cut(s)	54, 579
HphI	GGTGA	2 cut(s)	404, 464
Hpy166II	GTNNAC	2 cut(s)	360, 448
Hpy188I	TCNGA	1 cut(s)	487
Hpy188III	TCNNGA	6 cut(s)	110, 182, 247, 263, 557, 579
Hpy8I	GTNNAC	2 cut(s)	360, 448
HpyAV	CCTTC	1 cut(s)	585
HpyCH4III	ACNGT	2 cut(s)	452, 539
HpyCH4IV	ACGT	3 cut(s)	252, 459, 549
HpyCH4V	TGCA	2 cut(s)	285, 448
HpyF10VI	GCNNNNNNNGC	2 cut(s)	504, 593
HpyF3I	CTNAG	2 cut(s)	563, 597
HpySE526I	ACGT	3 cut(s)	252, 459, 549
Hsp92I	GRCGYC	1 cut(s)	459
Hsp92II	CATG	2 cut(s)	310, 394
HspAI	GCGC	1 cut(s)	498
Kpn2I	TCCGGA	1 cut(s)	578
Kzo9I	GATC	6 cut(s)	112, 133, 186, 335, 343, 409
LmnI	GCTCC	2 cut(s)	4, 581
Lsp1109I	GCAGC	3 cut(s)	62, 280, 571
MabI	ACCWGGT	1 cut(s)	92
MaeI	CTAG	1 cut(s)	315
MaeII	ACGT	3 cut(s)	252, 459, 549
MaeIII	GTNAC	1 cut(s)	530
MalI	GATC	6 cut(s)	114, 135, 188, 337, 345, 411
MboI	GATC	6 cut(s)	112, 133, 186, 335, 343, 409
MboII	GAAGA	3 cut(s)	289, 422, 487
MflI	RGATCY	3 cut(s)	133, 186, 335
MhlI	GDGCHC	6 cut(s)	164, 177, 262, 306, 450, 564
MluCI	AATT	1 cut(s)	349
MroI	TCCGGA	1 cut(s)	578
MroXI	GAANNNNTTC	2 cut(s)	316, 429
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	2 cut(s)	54, 579
MspR9I	CCNGG	4 cut(s)	55, 94, 324, 416
MvaI	CCWGG	3 cut(s)	94, 324, 416
MwoI	GCNNNNNNNGC	2 cut(s)	504, 593
NciI	CCSGG	1 cut(s)	55
NcoI	CCATGG	2 cut(s)	306, 390
NdeI	CATATG	1 cut(s)	502
NdeII	GATC	6 cut(s)	112, 133, 186, 335, 343, 409
NlaIII	CATG	2 cut(s)	310, 394
NlaIV	GGNNCC	3 cut(s)	245, 337, 358
PaeR7I	CTCGAG	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	456
PdmI	GAANNNNTTC	2 cut(s)	316, 429
PfeI	GAWTC	2 cut(s)	100, 123
PkrI	GCNGC	3 cut(s)	52, 295, 586
Psp124BI	GAGCTC	1 cut(s)	564
Psp6I	CCWGG	3 cut(s)	92, 322, 414
PspFI	CCCAGC	1 cut(s)	15
PspGI	CCWGG	3 cut(s)	92, 322, 414
PspN4I	GGNNCC	3 cut(s)	245, 337, 358
PspPI	GGNCC	1 cut(s)	357
PsuI	RGATCY	3 cut(s)	133, 186, 335
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	2 cut(s)	91, 328
RsaNI	GTAC	2 cut(s)	90, 327
SacI	GAGCTC	1 cut(s)	564
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	3 cut(s)	51, 294, 585
Sau3AI	GATC	6 cut(s)	112, 133, 186, 335, 343, 409
Sau96I	GGNCC	1 cut(s)	357
ScrFI	CCNGG	4 cut(s)	55, 94, 324, 416
SduI	GDGCHC	6 cut(s)	164, 177, 262, 306, 450, 564
SexAI	ACCWGGT	1 cut(s)	92
SfcI	CTRYAG	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	357
SlaI	CTCGAG	1 cut(s)	261
SmlI	CTYRAG	4 cut(s)	128, 261, 297, 557
SmoI	CTYRAG	4 cut(s)	128, 261, 297, 557
SpeI	ACTAGT	1 cut(s)	314
Sse9I	AATT	1 cut(s)	349
SsiI	CCGC	1 cut(s)	528
SspMI	CTAG	1 cut(s)	315
SstI	GAGCTC	1 cut(s)	564
StyD4I	CCNGG	4 cut(s)	53, 92, 322, 414
StyI	CCWWGG	3 cut(s)	306, 390, 463
TaaI	ACNGT	2 cut(s)	452, 539
TaiI	ACGT	3 cut(s)	255, 462, 552
TaqI	TCGA	2 cut(s)	27, 262
TasI	AATT	1 cut(s)	349
TfiI	GAWTC	2 cut(s)	100, 123
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	3 cut(s)	367, 450, 523
TseI	GCWGC	3 cut(s)	50, 293, 584
TspDTI	ATGAA	1 cut(s)	290
TspGWI	ACGGA	1 cut(s)	86
TspRI	CASTG	3 cut(s)	367, 450, 523
VneI	GTGCAC	1 cut(s)	446
VpaK11BI	GGWCC	1 cut(s)	357
XhoI	CTCGAG	1 cut(s)	261
XmnI	GAANNNNTTC	2 cut(s)	316, 429
XspI	CTAG	1 cut(s)	315
ZraI	GACGTC	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.