Rw5G035480

Belongs to the peptidase S10 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
61452936 .. 61456474
3539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035480.1

Sequence Viewer

Length: 1377 bp
ATGGCATCTACTTTTCCTCACACATTTTTCTCTTTTCTCTTGCTCCTTCTCCTACCGTTCTTCTCTTCCTCATATGGTATCAACACCAAACCTGACCAGCTTCACTTGTCTTCACCAGCATTCTTCCCAAAACTCCAAGCCGAAAAGCTCATCCGAGACCTCAACTTGTTCCCCAATGATGAGATTAACACCGGCGCCCATTACAACTCTTCATTGGATGCTCCAAAGCTTGTCGAGAAGCGGTTCAAGATGCCTTACCTTGGTGCTGCTTCTGGAGCTACTGTTCAAGAGCTTGGACATCATGCCGGCTACTATCGGCTTCCTCATTCCCACGCTGCAAGGATGTTCTACTTGTTCTTTGAATCAAGGACTAACAAGAATGACCCTGTTGTGATATGGTTGACTGGAGGACCAGGGTGCAGCAGTGAACTGGCTGTGTTTTATGAAAATGGTCCTTTCCAAATTGCAAATAACTTGTCTCTATCTTGGAATGACTATGGCTGGGACAAGGCGTCAAACCTTCTCTACGTTGACCAACCTGTTGGAACTGGTTTCAGCTATACTTCAGATAGCCGTGATATTCGTCATGATGAAGAAGGTGTTAGCAACGACTTGTACGATTTCTTGCAGGGATTTTTTACTCAGCATCCTCAATTTGCTAAGAATGACTTTTACATCACTGGAGAATCATATGCTGGCCACTACATTCCGGCATTTGCTTCTCGAGTTCACAAAGGAAACAAAGACAAGGAAGGGATTCACATAAACTTCAAGGGATTTGCAATAGGGAATGGCCTAACCAATCCAGATTTCCAGTACAAGGCATACCCTGATTATGCAATGCAGATGGGGTTGATTAAGAAACCTGATTATGATAGAATTACCAAGTCGATTCCAGACTGCGAACAAGCAATCAAGACTTGTGGCCCTACTGGTGGACAGCCTTGTATTGATGCATACAATGTTTGTAATGACATATTTTCCAAGATCATGGATATCATTGGTGATAAAAATTATTATGATGTCAGAAAACAATGTGTAGGGGATCTGTGTTATGACTTCTCAAACATGGAGACATTCCTGAACAAGAAACCAGTTAGGGATGCCCTAGGTGTGGGGGACATAGACTTTGTTTCTTGCAGCACTACAGTTTATGAGGCTATGCTGACGGATTGGATGAGAAATCTGGAAGTGGATATTCCTACCCTTCTTGAAGATGGAATTAAGGTGCTAGTGTATGCTGGGGAGTACGATCTCATCTGCAATTGGCTTGGGAACTCAAATTGGGTTCATGCCATGGAATGGTCTGGTCAGAAAGCATTTGGAGAATCATCAAATGTTCCATTCAAGGTTGGTGGTGCAGAAGCGGACTGCTAA

Protein Analysis

458

Amino Acids

51.47

Weight (kDa)

5.17

Isoelectric Point (pI)

30.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_S10 PF00450 97 - 445 2.9e-112 Serine carboxypeptidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015852)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G45010
malus_domestica MD00G1032400.v1.1 MD11G1146500.v1.1
prunus_persica Prupe.6G109600_v2.0.a1
pyrus_communis pycom11g11950
rosa_chinensis RchiOBHm_Chr5g0057441
rosa_laevigata RLG00000035154
rosa_multiflora Rmu_sc0003730.1_g000012
rosa_roxburghii Rroxscaffold_1G00023010
rosa_rugosa Rorug05G0307200 Rorug05G0307300
rosa_samantha Rh5AG375800 Rh5BG386600 Rh5DG400900
rosa_wichuraiana Rw5G035480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AccB7I CCANNNNNTGG 1 cut(s) 1302
AciI CCGC 2 cut(s) 241, 1367
AclWI GGATC 1 cut(s) 1053
AcoI YGGCCR 1 cut(s) 697
AcuI CTGAAG 1 cut(s) 549
AcyI GRCGYC 2 cut(s) 195, 512
AfaI GTAC 3 cut(s) 617, 818, 1250
AfiI CCNNNNNNNGG 5 cut(s) 260, 820, 935, 1114, 1302
AgsI TTSAA 6 cut(s) 247, 287, 362, 772, 1214, 1348
AhdI GACNNNNNGTC 1 cut(s) 511
AjnI CCWGG 1 cut(s) 412
AjuI GAANNNNNNNTTGG 2 cut(s) 794, 826
AloI GAACNNNNNNTCC 2 cut(s) 267, 299
AluBI AGCT 6 cut(s) 100, 148, 229, 278, 292, 558
AluI AGCT 6 cut(s) 100, 148, 229, 278, 292, 558
Alw26I GTCTC 3 cut(s) 150, 483, 1067
AlwI GGATC 1 cut(s) 1053
Ama87I CYCGRG 1 cut(s) 723
AoxI GGCC 3 cut(s) 697, 793, 925
ApeKI GCWGC 4 cut(s) 266, 335, 420, 1140
ArsI GACNNNNNNTTYG 4 cut(s) 461, 493, 1112, 1144
Asp700I GAANNNNTTC 2 cut(s) 242, 756
AspA2I CCTAGG 1 cut(s) 1108
AspLEI GCGC 1 cut(s) 197
AspS9I GGNCC 3 cut(s) 410, 452, 926
AsuHPI GGTGA 2 cut(s) 105, 1016
AvaI CYCGRG 1 cut(s) 723
AvaII GGWCC 2 cut(s) 410, 452
AvrII CCTAGG 1 cut(s) 1108
BalI TGGCCA 1 cut(s) 699
BanI GGYRCC 1 cut(s) 194
BbsI GAAGAC 1 cut(s) 102
BbvI GCAGC 4 cut(s) 253, 322, 432, 1152
BccI CCATC 2 cut(s) 841, 1211
BceAI ACGGC 1 cut(s) 558
BciT130I CCWGG 1 cut(s) 414
BcoDI GTCTC 3 cut(s) 150, 483, 1067
BfaI CTAG 2 cut(s) 1109, 1232
BfmI CTRYAG 1 cut(s) 1146
BfoI RGCGCY 1 cut(s) 198
BisI GCNGC 4 cut(s) 267, 336, 421, 1141
BlnI CCTAGG 1 cut(s) 1108
BlsI GCNGC 4 cut(s) 268, 337, 422, 1142
Bme1390I CCNGG 1 cut(s) 414
Bme18I GGWCC 2 cut(s) 410, 452
BmeRI GACNNNNNGTC 1 cut(s) 511
BmeT110I CYCGRG 1 cut(s) 723
BmgT120I GGNCC 3 cut(s) 410, 452, 926
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 414
BmsI GCATC 6 cut(s) 14, 208, 240, 655, 943, 1093
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 3 cut(s) 294, 426, 702
BsaHI GRCGYC 2 cut(s) 195, 512
BsaI GGTCTC 1 cut(s) 150
BsaJI CCNNGG 4 cut(s) 259, 413, 1108, 1296
BsaXI ACNNNNNCTCC 2 cut(s) 267, 297
Bsc4I CCNNNNNNNGG 5 cut(s) 260, 820, 935, 1114, 1302
Bse118I RCCGGY 2 cut(s) 191, 305
Bse1I ACTGG 7 cut(s) 409, 435, 553, 685, 814, 937, 1094
Bse3DI GCAATG 1 cut(s) 846
BseBI CCWGG 1 cut(s) 414
BseDI CCNNGG 4 cut(s) 259, 413, 1108, 1296
BseGI GGATG 6 cut(s) 150, 223, 348, 646, 1108, 1182
BseLI CCNNNNNNNGG 5 cut(s) 260, 820, 935, 1114, 1302
BseMI GCAATG 1 cut(s) 846
BseMII CTCAG 1 cut(s) 656
BseNI ACTGG 7 cut(s) 409, 435, 553, 685, 814, 937, 1094
BseXI GCAGC 4 cut(s) 253, 322, 432, 1152
BseYI CCCAGC 2 cut(s) 501, 1241
BsgI GTGCAG 1 cut(s) 439
BshFI GGCC 3 cut(s) 699, 795, 927
BshNI GGYRCC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 723
BsiSI CCGG 3 cut(s) 192, 306, 710
BslFI GGGAC 2 cut(s) 518, 1133
BslI CCNNNNNNNGG 5 cut(s) 260, 820, 935, 1114, 1302
BsmAI GTCTC 3 cut(s) 150, 483, 1067
BsmFI GGGAC 2 cut(s) 518, 1133
BsmI GAATGC 1 cut(s) 119
BsnI GGCC 3 cut(s) 699, 795, 927
Bso31I GGTCTC 1 cut(s) 150
BsoBI CYCGRG 1 cut(s) 723
Bsp143I GATC 3 cut(s) 987, 1045, 1252
Bsp19I CCATGG 1 cut(s) 1296
BspACI CCGC 2 cut(s) 241, 1367
BspANI GGCC 3 cut(s) 699, 795, 927
BspCNI CTCAG 1 cut(s) 655
BspHI TCATGA 1 cut(s) 586
BspLI GGNNCC 1 cut(s) 196
BspPI GGATC 1 cut(s) 1053
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 150
BsrDI GCAATG 1 cut(s) 846
BsrFI RCCGGY 2 cut(s) 191, 305
BsrI ACTGG 7 cut(s) 409, 435, 553, 685, 814, 937, 1094
BssAI RCCGGY 2 cut(s) 191, 305
BssECI CCNNGG 4 cut(s) 259, 413, 1108, 1296
BssMI GATC 3 cut(s) 987, 1045, 1252
BssNI GRCGYC 2 cut(s) 195, 512
BssT1I CCWWGG 3 cut(s) 259, 1108, 1296
Bst2UI CCWGG 1 cut(s) 414
Bst4CI ACNGT 3 cut(s) 57, 283, 1150
Bst6I CTCTTC 2 cut(s) 70, 214
BstACI GRCGYC 2 cut(s) 195, 512
BstC8I GCNNGC 2 cut(s) 307, 697
BstDEI CTNAG 2 cut(s) 642, 660
BstDSI CCRYGG 1 cut(s) 1296
BstF5I GGATG 6 cut(s) 150, 223, 348, 646, 1108, 1182
BstH2I RGCGCY 1 cut(s) 198
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 3 cut(s) 990, 1048, 1255
BstMAI GTCTC 3 cut(s) 150, 483, 1067
BstMBI GATC 3 cut(s) 987, 1045, 1252
BstMWI GCNNNNNNNGC 1 cut(s) 275
BstNI CCWGG 1 cut(s) 414
BstSCI CCNGG 1 cut(s) 412
BstSFI CTRYAG 1 cut(s) 1146
BstV1I GCAGC 4 cut(s) 253, 322, 432, 1152
BstV2I GAAGAC 1 cut(s) 102
BstX2I RGATCY 1 cut(s) 1045
BstXI CCANNNNNNTGG 2 cut(s) 542, 991
BstYI RGATCY 1 cut(s) 1045
BsuRI GGCC 3 cut(s) 699, 795, 927
BtgI CCRYGG 1 cut(s) 1296
BtsCI GGATG 6 cut(s) 150, 223, 348, 646, 1108, 1182
BtsI GCAGTG 1 cut(s) 430
BtsIMutI CAGTG 2 cut(s) 430, 678
Cac8I GCNNGC 2 cut(s) 307, 697
CciI TCATGA 1 cut(s) 586
CfoI GCGC 1 cut(s) 197
Cfr10I RCCGGY 2 cut(s) 191, 305
Cfr13I GGNCC 3 cut(s) 410, 452, 926
CseI GACGC 1 cut(s) 501
Csp6I GTAC 3 cut(s) 616, 817, 1249
CspCI CAANNNNNGTGG 4 cut(s) 904, 939, 1336, 1371
CviAII CATG 6 cut(s) 302, 587, 991, 1069, 1292, 1297
CviQI GTAC 3 cut(s) 616, 817, 1249
DdeI CTNAG 2 cut(s) 642, 660
DinI GGCGCC 1 cut(s) 196
DpnI GATC 3 cut(s) 989, 1047, 1254
DpnII GATC 3 cut(s) 987, 1045, 1252
DriI GACNNNNNGTC 1 cut(s) 511
EaeI YGGCCR 1 cut(s) 697
Eam1104I CTCTTC 2 cut(s) 70, 214
Eam1105I GACNNNNNGTC 1 cut(s) 511
EarI CTCTTC 2 cut(s) 70, 214
Eco130I CCWWGG 3 cut(s) 259, 1108, 1296
Eco31I GGTCTC 1 cut(s) 150
Eco32I GATATC 1 cut(s) 997
Eco47I GGWCC 2 cut(s) 410, 452
Eco57I CTGAAG 1 cut(s) 549
Eco88I CYCGRG 1 cut(s) 723
EcoRII CCWGG 1 cut(s) 412
EcoRV GATATC 1 cut(s) 997
EcoT14I CCWWGG 3 cut(s) 259, 1108, 1296
EcoT22I ATGCAT 1 cut(s) 958
EgeI GGCGCC 1 cut(s) 196
EheI GGCGCC 1 cut(s) 196
ErhI CCWWGG 3 cut(s) 259, 1108, 1296
FaeI CATG 6 cut(s) 305, 590, 994, 1072, 1295, 1300
FalI AAGNNNNNCTT 2 cut(s) 653, 685
FaqI GGGAC 2 cut(s) 518, 1133
FatI CATG 6 cut(s) 301, 586, 990, 1068, 1291, 1296
FauNDI CATATG 2 cut(s) 73, 691
Fnu4HI GCNGC 4 cut(s) 267, 336, 421, 1141
FokI GGATG 6 cut(s) 137, 230, 355, 633, 1115, 1189
Fsp4HI GCNGC 4 cut(s) 267, 336, 421, 1141
FspBI CTAG 2 cut(s) 1109, 1232
GlaI GCGC 1 cut(s) 196
GluI GCNGC 4 cut(s) 267, 336, 421, 1141
GsaI CCCAGC 2 cut(s) 505, 1245
GsuI CTGGAG 3 cut(s) 294, 426, 702
HaeII RGCGCY 1 cut(s) 198
HaeIII GGCC 3 cut(s) 699, 795, 927
HapII CCGG 3 cut(s) 192, 306, 710
HgaI GACGC 1 cut(s) 501
HhaI GCGC 1 cut(s) 197
Hin1I GRCGYC 2 cut(s) 195, 512
Hin1II CATG 6 cut(s) 305, 590, 994, 1072, 1295, 1300
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 2 cut(s) 402, 532
HindII GTYRAC 2 cut(s) 402, 532
HindIII AAGCTT 1 cut(s) 227
HinfI GANTC 5 cut(s) 362, 686, 757, 892, 1328
HpaII CCGG 3 cut(s) 192, 306, 710
HphI GGTGA 2 cut(s) 105, 1016
Hpy166II GTNNAC 5 cut(s) 402, 428, 532, 730, 938
Hpy188I TCNGA 4 cut(s) 155, 568, 1028, 1314
Hpy8I GTNNAC 5 cut(s) 402, 428, 532, 730, 938
HpyAV CCTTC 5 cut(s) 56, 530, 590, 746, 1217
HpyCH4III ACNGT 3 cut(s) 57, 283, 1150
HpyCH4IV ACGT 1 cut(s) 528
HpyF10VI GCNNNNNNNGC 1 cut(s) 275
HpyF3I CTNAG 2 cut(s) 642, 660
HpySE526I ACGT 1 cut(s) 528
Hsp92I GRCGYC 2 cut(s) 195, 512
Hsp92II CATG 6 cut(s) 305, 590, 994, 1072, 1295, 1300
HspAI GCGC 1 cut(s) 195
KasI GGCGCC 1 cut(s) 194
KroI GCCGGC 1 cut(s) 305
KroNI GCCGGC 1 cut(s) 307
Kzo9I GATC 3 cut(s) 987, 1045, 1252
LmnI GCTCC 3 cut(s) 48, 226, 275
Lsp1109I GCAGC 4 cut(s) 253, 322, 432, 1152
LweI GCATC 6 cut(s) 14, 208, 240, 655, 943, 1093
MaeI CTAG 2 cut(s) 1109, 1232
MaeII ACGT 1 cut(s) 528
MalI GATC 3 cut(s) 989, 1047, 1254
MboI GATC 3 cut(s) 987, 1045, 1252
MboII GAAGA 7 cut(s) 52, 57, 102, 115, 201, 605, 1226
MfeI CAATTG 1 cut(s) 1264
MflI RGATCY 1 cut(s) 1045
MlsI TGGCCA 1 cut(s) 699
MluCI AATT 7 cut(s) 462, 653, 879, 1012, 1221, 1264, 1282
MluNI TGGCCA 1 cut(s) 699
Mly113I GGCGCC 1 cut(s) 195
MmeI TCCRAC 1 cut(s) 523
MnlI CCTC 7 cut(s) 27, 79, 170, 333, 401, 660, 1150
Mox20I TGGCCA 1 cut(s) 699
Mph1103I ATGCAT 1 cut(s) 958
MroNI GCCGGC 1 cut(s) 305
MroXI GAANNNNTTC 2 cut(s) 242, 756
MscI TGGCCA 1 cut(s) 699
MseI TTAA 3 cut(s) 186, 858, 1224
Msp20I TGGCCA 1 cut(s) 699
MspI CCGG 3 cut(s) 192, 306, 710
MspR9I CCNGG 1 cut(s) 414
MunI CAATTG 1 cut(s) 1264
Mva1269I GAATGC 1 cut(s) 119
MvaI CCWGG 1 cut(s) 414
MwoI GCNNNNNNNGC 1 cut(s) 275
NaeI GCCGGC 1 cut(s) 307
NarI GGCGCC 1 cut(s) 195
NcoI CCATGG 1 cut(s) 1296
NdeI CATATG 2 cut(s) 73, 691
NdeII GATC 3 cut(s) 987, 1045, 1252
NgoMIV GCCGGC 1 cut(s) 305
NlaIII CATG 6 cut(s) 305, 590, 994, 1072, 1295, 1300
NlaIV GGNNCC 1 cut(s) 196
NsiI ATGCAT 1 cut(s) 958
PaeR7I CTCGAG 1 cut(s) 723
PagI TCATGA 1 cut(s) 586
PcsI WCGNNNNNNNCGW 1 cut(s) 615
PctI GAATGC 1 cut(s) 119
PdiI GCCGGC 1 cut(s) 307
PdmI GAANNNNTTC 2 cut(s) 242, 756
PfeI GAWTC 5 cut(s) 362, 686, 757, 892, 1328
PflMI CCANNNNNTGG 1 cut(s) 1302
PkrI GCNGC 4 cut(s) 268, 337, 422, 1142
PluTI GGCGCC 1 cut(s) 198
Psp6I CCWGG 1 cut(s) 412
PspFI CCCAGC 2 cut(s) 501, 1241
PspGI CCWGG 1 cut(s) 412
PspN4I GGNNCC 1 cut(s) 196
PspPI GGNCC 3 cut(s) 410, 452, 926
PsuI RGATCY 1 cut(s) 1045
RsaI GTAC 3 cut(s) 617, 818, 1250
RsaNI GTAC 3 cut(s) 616, 817, 1249
SaqAI TTAA 3 cut(s) 186, 858, 1224
SatI GCNGC 4 cut(s) 267, 336, 421, 1141
Sau3AI GATC 3 cut(s) 987, 1045, 1252
Sau96I GGNCC 3 cut(s) 410, 452, 926
ScrFI CCNGG 1 cut(s) 414
SfaNI GCATC 6 cut(s) 14, 208, 240, 655, 943, 1093
SfcI CTRYAG 1 cut(s) 1146
SfoI GGCGCC 1 cut(s) 196
Sfr274I CTCGAG 1 cut(s) 723
SgrAI CRCCGGYG 1 cut(s) 191
SinI GGWCC 2 cut(s) 410, 452
SlaI CTCGAG 1 cut(s) 723
SmlI CTYRAG 1 cut(s) 723
SmoI CTYRAG 1 cut(s) 723
Sse9I AATT 7 cut(s) 462, 653, 879, 1012, 1221, 1264, 1282
SsiI CCGC 2 cut(s) 241, 1367
SspDI GGCGCC 1 cut(s) 194
SspMI CTAG 2 cut(s) 1109, 1232
StyD4I CCNGG 1 cut(s) 412
StyI CCWWGG 3 cut(s) 259, 1108, 1296
TaaI ACNGT 3 cut(s) 57, 283, 1150
TaiI ACGT 1 cut(s) 531
TaqI TCGA 3 cut(s) 234, 724, 890
TasI AATT 7 cut(s) 462, 653, 879, 1012, 1221, 1264, 1282
TatI WGTACW 1 cut(s) 816
TfiI GAWTC 5 cut(s) 362, 686, 757, 892, 1328
Tru1I TTAA 3 cut(s) 186, 858, 1224
Tru9I TTAA 3 cut(s) 186, 858, 1224
TscAI CASTG 2 cut(s) 430, 685
TseI GCWGC 4 cut(s) 266, 335, 420, 1140
TspDTI ATGAA 4 cut(s) 201, 459, 606, 1280
TspGWI ACGGA 1 cut(s) 1184
TspRI CASTG 2 cut(s) 430, 685
Van91I CCANNNNNTGG 1 cut(s) 1302
VpaK11BI GGWCC 2 cut(s) 410, 452
XhoI CTCGAG 1 cut(s) 723
XmaJI CCTAGG 1 cut(s) 1108
XmnI GAANNNNTTC 2 cut(s) 242, 756
XspI CTAG 2 cut(s) 1109, 1232
Zsp2I ATGCAT 1 cut(s) 958
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.