Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0015852

Physical Location & Seq

Genomic Coordinates Forward (+)

35990256 .. 35992313

Gene Structure 2058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0307300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGTATTCTGAAGATTACCCTGAGGCCGTCGGGTCCTCAACACCCGTAGTAGAGTTTGTGTCGGAATCAGAACTGTGGGAGGAGCAAGCAAACTGGGATGACCAAGACAAAAGCTTATATTTGTGCGTGGGCGACTACTATGGGAGAAGAGGCAAGGTACTGTATGTTGTTTATCGTATCAATTTGAAAGCCCTCTTGTTTAGTGAGGATCTAGAGTTTGAAACCGTGTTCGAAGTTCCCAATAATGATAATATTGGGAATTGTGCCGGATTTGGTATGGGACTTTCTATGATATTCTTGGGTGGAGGATTTAAAGCCAAGTACTCGAAAGAATTTGTTGTCCCAGAGCCGTGTACAGGTATTCTGGCCTATCGCATTCGTAAAATTTTTGAAGATGGTGGTTTAGCTCATTTCTTAGACGGCAAAGTGAGGCCACTTATATGGGAGGTTGAAGGAAATTTGTTCGCTCTCGCTCGTAACCCGCCTCCTCGAATTGACACCGGTTTCCCAGCTAGTGAATGGAGAAACTGTTTTGAAATGTATGACCGGGCCCAGAGTCGATGGGTTGGTTTGCCGGACCCTCCTTCTTATGCTGAATACCCTGTCGCTGCTGTTGATGAGTCTGGTGGTGTTGGTGGTGGTGGTATTGATGAGGAGGAGGAGTTAGTTGGTTGTGATGACGGCGCTTTGAGAAGGCACTGTTACTATTCAACCTTCTCTTATGCAATTTTAGGTAGCCAACTTTTCGTGTCTAATCCACACTATCATGAATATTCATACAAGTGCAACCTTCCCAGCAAGCGTGAAAACTGGCCAGTTGAGTGGAAAGTTTCAAGTTTCCAATTTCAGGGTGTAACTCTAGGGGTTCAAACGGCACAAGGGTTTGTAGTCTTTTCCTATGATGTCAATTTCCATCCACCTGAATATGTAGTTAAACTTGAAGATAATCCCTACTTAAATATCAAAGTGCAATTGTTGATAAATGGCTATGATGAACCGGTGCTTTCTCAATCTCTAATGATGCCGCAAGAGCTGGATGAAGTTCAAGACTCCCAGTTTGTTCACCTAGGAGGTCAAAAAGTCTGCTTTCTCTATTCTAGAATGAGAGATTCCAAGTTGCTTGTAACCGCCATCACATTTGGCTTCCAACTCGAACAGAGAAATAGCGGCTTCAAAGTCAAAGCCAAATTTTATCCTACTCGCAACTGGGAATTCCAAAATAAGGCTGGGTCTAAGGCTAAAGTTTGGGGCACGGAACAGATGGTTGGTGCTGTTGTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004185 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008236 GO:0008238 GO:0009056 GO:0009057 GO:0009987 GO:0016787 GO:0017171 GO:0019538 GO:0030163 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0070008 GO:0070011 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_S10

Protein Analysis

427

Amino Acids

48.37

Weight (kDa)

4.88

Isoelectric Point (pI)

46.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015852)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G45010
malus_domestica	MD00G1032400.v1.1 MD11G1146500.v1.1
prunus_persica	Prupe.6G109600_v2.0.a1
pyrus_communis	pycom11g11950
rosa_chinensis	RchiOBHm_Chr5g0057441
rosa_laevigata	RLG00000035154
rosa_multiflora	Rmu_sc0003730.1_g000012
rosa_roxburghii	Rroxscaffold_1G00023010
rosa_rugosa	Rorug05G0307200 Rorug05G0307300
rosa_samantha	Rh5AG375800 Rh5BG386600 Rh5DG400900
rosa_wichuraiana	Rw5G035480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	482, 1025, 1128, 1167
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	812
AcsI	RAATTY	5 cut(s)	332, 384, 457, 1187, 1211
AcuI	CTGAAG	1 cut(s)	30
AfaI	GTAC	3 cut(s)	159, 323, 355
AfiI	CCNNNNNNNGG	3 cut(s)	356, 847, 1222
AgeI	ACCGGT	2 cut(s)	500, 997
AjuI	GAANNNNNNNTTGG	2 cut(s)	1248, 1280
AluBI	AGCT	4 cut(s)	114, 407, 512, 1033
AluI	AGCT	4 cut(s)	114, 407, 512, 1033
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	5 cut(s)	24, 366, 431, 549, 812
ApaI	GGGCCC	1 cut(s)	553
ApeKI	GCWGC	1 cut(s)	608
ApoI	RAATTY	5 cut(s)	332, 384, 457, 1187, 1211
ArsI	GACNNNNNNTTYG	2 cut(s)	1040, 1072
AsiGI	ACCGGT	2 cut(s)	500, 997
AspA2I	CCTAGG	1 cut(s)	1066
AspLEI	GCGC	1 cut(s)	686
AspS9I	GGNCC	4 cut(s)	33, 549, 550, 577
AsuC2I	CCSGG	1 cut(s)	548
AsuHPI	GGTGA	1 cut(s)	1055
AsuII	TTCGAA	1 cut(s)	231
AvaII	GGWCC	2 cut(s)	33, 577
AvrII	CCTAGG	1 cut(s)	1066
AxyI	CCTNAGG	1 cut(s)	21
BaeGI	GKGCMC	2 cut(s)	553, 1253
BalI	TGGCCA	1 cut(s)	814
BanII	GRGCYC	1 cut(s)	553
BbvI	GCAGC	1 cut(s)	595
BccI	CCATC	5 cut(s)	389, 555, 921, 1139, 1255
BceAI	ACGGC	5 cut(s)	11, 334, 436, 697, 888
BcnI	CCSGG	1 cut(s)	548
BfaI	CTAG	5 cut(s)	212, 513, 860, 1067, 1098
BfoI	RGCGCY	1 cut(s)	687
BisI	GCNGC	3 cut(s)	609, 1025, 1168
BlnI	CCTAGG	1 cut(s)	1066
BlsI	GCNGC	3 cut(s)	610, 1026, 1169
BmcAI	AGTACT	1 cut(s)	323
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	2 cut(s)	33, 577
BmgT120I	GGNCC	4 cut(s)	33, 549, 550, 577
BmiI	GGNNCC	3 cut(s)	34, 551, 579
BmrFI	CCNGG	1 cut(s)	548
BmrI	ACTGGG	3 cut(s)	103, 1048, 1216
BmsI	GCATC	1 cut(s)	1011
BmuI	ACTGGG	3 cut(s)	103, 1048, 1216
Bpu14I	TTCGAA	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	548
BsaJI	CCNNGG	1 cut(s)	1066
BsaWI	WCCGGW	2 cut(s)	500, 997
BsaXI	ACNNNNNCTCC	4 cut(s)	514, 544, 647, 677
Bsc4I	CCNNNNNNNGG	3 cut(s)	356, 847, 1222
Bse118I	RCCGGY	2 cut(s)	500, 997
Bse1I	ACTGG	5 cut(s)	98, 815, 815, 1054, 1211
Bse21I	CCTNAGG	1 cut(s)	21
BseDI	CCNNGG	1 cut(s)	1066
BseGI	GGATG	3 cut(s)	103, 913, 1042
BseLI	CCNNNNNNNGG	3 cut(s)	356, 847, 1222
BseMII	CTCAG	1 cut(s)	12
BseNI	ACTGG	5 cut(s)	98, 815, 815, 1054, 1211
BseRI	GAGGAG	5 cut(s)	95, 477, 668, 671, 674
BseSI	GKGCMC	2 cut(s)	553, 1253
BseXI	GCAGC	1 cut(s)	595
BseYI	CCCAGC	3 cut(s)	508, 794, 1226
BshFI	GGCC	5 cut(s)	26, 368, 433, 551, 814
BshTI	ACCGGT	2 cut(s)	500, 997
BsiSI	CCGG	5 cut(s)	267, 501, 547, 575, 998
BslFI	GGGAC	2 cut(s)	294, 326
BslI	CCNNNNNNNGG	3 cut(s)	356, 847, 1222
BsmFI	GGGAC	2 cut(s)	294, 326
BsmI	GAATGC	1 cut(s)	375
BsnI	GGCC	5 cut(s)	26, 368, 433, 551, 814
Bsp119I	TTCGAA	1 cut(s)	231
Bsp120I	GGGCCC	1 cut(s)	549
Bsp1286I	GDGCHC	2 cut(s)	553, 1253
Bsp1407I	TGTACA	1 cut(s)	353
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	4 cut(s)	482, 1025, 1128, 1167
BspANI	GGCC	5 cut(s)	26, 368, 433, 551, 814
BspCNI	CTCAG	1 cut(s)	13
BspHI	TCATGA	1 cut(s)	766
BspLI	GGNNCC	3 cut(s)	34, 551, 579
BspPI	GGATC	1 cut(s)	216
BspT104I	TTCGAA	1 cut(s)	231
BsrFI	RCCGGY	2 cut(s)	500, 997
BsrGI	TGTACA	1 cut(s)	353
BsrI	ACTGG	5 cut(s)	98, 815, 815, 1054, 1211
BssAI	RCCGGY	2 cut(s)	500, 997
BssECI	CCNNGG	1 cut(s)	1066
BssMI	GATC	1 cut(s)	208
BssT1I	CCWWGG	1 cut(s)	1066
Bst4CI	ACNGT	5 cut(s)	75, 162, 226, 530, 701
Bst6I	CTCTTC	1 cut(s)	142
BstAUI	TGTACA	1 cut(s)	353
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	2 cut(s)	87, 800
BstDEI	CTNAG	3 cut(s)	21, 415, 1233
BstF5I	GGATG	3 cut(s)	103, 913, 1042
BstH2I	RGCGCY	1 cut(s)	687
BstHHI	GCGC	1 cut(s)	686
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	1 cut(s)	1030
BstSCI	CCNGG	1 cut(s)	546
BstSLI	GKGCMC	2 cut(s)	553, 1253
BstV1I	GCAGC	1 cut(s)	595
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	2 cut(s)	441, 822
BstYI	RGATCY	1 cut(s)	208
Bsu36I	CCTNAGG	1 cut(s)	21
BsuRI	GGCC	5 cut(s)	26, 368, 433, 551, 814
BtsCI	GGATG	3 cut(s)	103, 913, 1042
BtsIMutI	CAGTG	1 cut(s)	697
Cac8I	GCNNGC	2 cut(s)	87, 800
CciI	TCATGA	1 cut(s)	766
CfoI	GCGC	1 cut(s)	686
Cfr10I	RCCGGY	2 cut(s)	500, 997
Cfr13I	GGNCC	4 cut(s)	33, 549, 550, 577
Csp6I	GTAC	3 cut(s)	158, 322, 354
CspAI	ACCGGT	2 cut(s)	500, 997
CviAII	CATG	1 cut(s)	767
CviQI	GTAC	3 cut(s)	158, 322, 354
DdeI	CTNAG	3 cut(s)	21, 415, 1233
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraI	TTTAAA	1 cut(s)	313
EaeI	YGGCCR	1 cut(s)	812
Eam1104I	CTCTTC	1 cut(s)	142
EarI	CTCTTC	1 cut(s)	142
Eco130I	CCWWGG	1 cut(s)	1066
Eco24I	GRGCYC	1 cut(s)	553
Eco47I	GGWCC	2 cut(s)	33, 577
Eco57I	CTGAAG	1 cut(s)	30
Eco81I	CCTNAGG	1 cut(s)	21
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	1211
EcoT14I	CCWWGG	1 cut(s)	1066
EcoT38I	GRGCYC	1 cut(s)	553
ErhI	CCWWGG	1 cut(s)	1066
FaeI	CATG	1 cut(s)	770
FaqI	GGGAC	2 cut(s)	294, 326
FatI	CATG	1 cut(s)	766
FauI	CCCGC	1 cut(s)	489
Fnu4HI	GCNGC	3 cut(s)	609, 1025, 1168
FokI	GGATG	3 cut(s)	110, 900, 1049
FriOI	GRGCYC	1 cut(s)	553
Fsp4HI	GCNGC	3 cut(s)	609, 1025, 1168
FspBI	CTAG	5 cut(s)	212, 513, 860, 1067, 1098
GlaI	GCGC	1 cut(s)	685
GluI	GCNGC	3 cut(s)	609, 1025, 1168
GsaI	CCCAGC	3 cut(s)	512, 798, 1230
HaeII	RGCGCY	1 cut(s)	687
HaeIII	GGCC	5 cut(s)	26, 368, 433, 551, 814
HapII	CCGG	5 cut(s)	267, 501, 547, 575, 998
HhaI	GCGC	1 cut(s)	686
Hin1II	CATG	1 cut(s)	770
Hin6I	GCGC	1 cut(s)	684
HinP1I	GCGC	1 cut(s)	684
HindIII	AAGCTT	1 cut(s)	112
HinfI	GANTC	5 cut(s)	65, 556, 620, 1049, 1109
HpaII	CCGG	5 cut(s)	267, 501, 547, 575, 998
HphI	GGTGA	1 cut(s)	1055
Hpy166II	GTNNAC	2 cut(s)	354, 1063
Hpy188I	TCNGA	3 cut(s)	10, 64, 70
Hpy188III	TCNNGA	4 cut(s)	212, 767, 1046, 1098
Hpy8I	GTNNAC	2 cut(s)	354, 1063
Hpy99I	CGWCG	1 cut(s)	32
HpyAV	CCTTC	5 cut(s)	446, 594, 687, 724, 800
HpyCH4III	ACNGT	5 cut(s)	75, 162, 226, 530, 701
HpyCH4V	TGCA	3 cut(s)	725, 786, 970
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1030
HpyF3I	CTNAG	3 cut(s)	21, 415, 1233
Hsp92II	CATG	1 cut(s)	770
HspAI	GCGC	1 cut(s)	684
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	82
Lsp1109I	GCAGC	1 cut(s)	595
LweI	GCATC	1 cut(s)	1011
MaeI	CTAG	5 cut(s)	212, 513, 860, 1067, 1098
MaeIII	GTNAC	4 cut(s)	476, 701, 853, 1123
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	4 cut(s)	23, 159, 404, 953
MfeI	CAATTG	1 cut(s)	971
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	553, 1253
MlsI	TGGCCA	1 cut(s)	814
MluNI	TGGCCA	1 cut(s)	814
MlyI	GAGTC	3 cut(s)	565, 629, 1043
MmeI	TCCRAC	2 cut(s)	42, 1171
Mox20I	TGGCCA	1 cut(s)	814
MscI	TGGCCA	1 cut(s)	814
MseI	TTAA	3 cut(s)	312, 933, 956
MslI	CAYNNNNRTG	3 cut(s)	439, 765, 781
Msp20I	TGGCCA	1 cut(s)	814
MspI	CCGG	5 cut(s)	267, 501, 547, 575, 998
MspR9I	CCNGG	1 cut(s)	548
MunI	CAATTG	1 cut(s)	971
Mva1269I	GAATGC	1 cut(s)	375
MwoI	GCNNNNNNNGC	1 cut(s)	1030
NciI	CCSGG	1 cut(s)	548
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	770
NlaIV	GGNNCC	3 cut(s)	34, 551, 579
NspV	TTCGAA	1 cut(s)	231
PagI	TCATGA	1 cut(s)	766
PctI	GAATGC	1 cut(s)	375
PfeI	GAWTC	2 cut(s)	65, 1109
PinAI	ACCGGT	2 cut(s)	500, 997
PkrI	GCNGC	3 cut(s)	610, 1026, 1169
PleI	GAGTC	3 cut(s)	564, 628, 1043
PpsI	GAGTC	3 cut(s)	564, 628, 1043
PpuMI	RGGWCCY	1 cut(s)	33
Psp5II	RGGWCCY	1 cut(s)	33
PspFI	CCCAGC	3 cut(s)	508, 794, 1226
PspN4I	GGNNCC	3 cut(s)	34, 551, 579
PspOMI	GGGCCC	1 cut(s)	549
PspPI	GGNCC	4 cut(s)	33, 549, 550, 577
PspPPI	RGGWCCY	1 cut(s)	33
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	3 cut(s)	159, 323, 355
RsaNI	GTAC	3 cut(s)	158, 322, 354
RseI	CAYNNNNRTG	3 cut(s)	439, 765, 781
SaqAI	TTAA	3 cut(s)	312, 933, 956
SatI	GCNGC	3 cut(s)	609, 1025, 1168
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	4 cut(s)	33, 549, 550, 577
ScaI	AGTACT	1 cut(s)	323
SchI	GAGTC	3 cut(s)	565, 629, 1043
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	2 cut(s)	553, 1253
SfaNI	GCATC	1 cut(s)	1011
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	2 cut(s)	33, 577
SmiMI	CAYNNNNRTG	3 cut(s)	439, 765, 781
SsiI	CCGC	4 cut(s)	482, 1025, 1128, 1167
SspI	AATATT	2 cut(s)	253, 773
SspMI	CTAG	5 cut(s)	212, 513, 860, 1067, 1098
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	1 cut(s)	1066
TaaI	ACNGT	5 cut(s)	75, 162, 226, 530, 701
TaqI	TCGA	5 cut(s)	231, 326, 490, 559, 1152
TatI	WGTACW	2 cut(s)	321, 353
TauI	GCSGC	2 cut(s)	1027, 1170
TfiI	GAWTC	2 cut(s)	65, 1109
Tru1I	TTAA	3 cut(s)	312, 933, 956
Tru9I	TTAA	3 cut(s)	312, 933, 956
TscAI	CASTG	1 cut(s)	704
TseI	GCWGC	1 cut(s)	608
TspDTI	ATGAA	4 cut(s)	765, 783, 1008, 1053
TspGWI	ACGGA	1 cut(s)	1268
TspRI	CASTG	1 cut(s)	704
VpaK11BI	GGWCC	2 cut(s)	33, 577
XapI	RAATTY	5 cut(s)	332, 384, 457, 1187, 1211
XbaI	TCTAGA	2 cut(s)	211, 1097
XcmI	CCANNNNNNNNNTGG	2 cut(s)	516, 1223
XmaJI	CCTAGG	1 cut(s)	1066
XspI	CTAG	5 cut(s)	212, 513, 860, 1067, 1098
ZrmI	AGTACT	1 cut(s)	323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.