Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008741

Physical Location & Seq

Genomic Coordinates Forward (+)

36369001 .. 36372727

Gene Structure 3727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0309800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCAAAGTGGTCTGGTACCAAATTTTGGCAAACAGCTCAGCTTCACCCTAGACACTTACTTTTTTGATCCTCTGACTCCTCTCATCTCTTCGCGACTTCGCCTCCACTGGTCCTCCCCTATTTTGCACAGACCGGAAATATCAGAGTATCAGGTGATTCAGGTCCGCCTTTTCTTCTCCAATCTCCACCTCTCCCTTCCATTGCCCGATCTAATGCCCAACTGCCCAACAGCCCAAGATTTGCAGAGATTCTTGTCTTCTTGCAGAGTTGTAGACTGGAGTGACCGAAGAGACATCAGAAAGCGATGGGACAGGCAATCTCAGGCATTTTATAACTTATTTAGACAGGCAGACAGAGTTGAAAAGCTTGCTGAAATTATCCAAAGATTGGAGCAAGGTGATCTGAAGCTTAGAGTTCGGACTTTAGAATCTGAGAGGGCGTTCCAGCGAGTTGCTACTGTCCAGAAGACTGTTGGAAATCAATCATGGCAATCACGGCTTAATAGGCTAATATTGTTCAATGCGGTTGATAATGATTCTGTGATTGCTGAGTTTGAACTCGGTGGGTCTCGGATGCCTAGACAGGAATTTGATCCTGGTTCCGCCACTGATGGCATGGAGGCCATCTACTTTGATGCAGGTGAACCGGCCATAGATGCGGAGTTGAAACCAGCTAAGGTGGTGAAATGGGAACCAGCAAAAGATATGGAGTTGAAACCTGCTAAGAATGTGGAGTTGAAACCATTAGAGAATAGTTATACAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane ABC_tran

Protein Analysis

255

Amino Acids

29.5

Weight (kDa)

6.86

Isoelectric Point (pI)

50.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008741)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28070 AT2G28070
fragaria_vesca	FvH4_1g24480 FvH4_1g24480 FvH4_1g24480 FvH4_1g24480 FvH4_1g24480 FvH4_1g24480
malus_domestica	MD00G1165400.v1.1 MD03G1125800.v1.1
prunus_persica	Prupe.6G107900_v2.0.a1 Prupe.6G107900_v2.0.a1
pyrus_communis	pycom11g11830
rosa_chinensis	RchiOBHm_Chr5g0057821
rosa_laevigata	RLG00000035180
rosa_multiflora	Rmu_sc0010457.1_g000004
rosa_roxburghii	Rroxscaffold_1G00022680
rosa_rugosa	Rorug05G0309800
rosa_samantha	Rh5AG377900 Rh5BG389200 Rh5CG413500 Rh5DG404100
rosa_wichuraiana	Rw5G035660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	333
AarI	CACCTGC	1 cut(s)	629
Acc36I	ACCTGC	2 cut(s)	629, 727
Acc65I	GGTACC	1 cut(s)	16
AccB1I	GGYRCC	1 cut(s)	16
AccB7I	CCANNNNNTGG	2 cut(s)	26, 388
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	94
AciI	CCGC	4 cut(s)	166, 524, 603, 659
AclWI	GGATC	2 cut(s)	62, 587
AcoI	YGGCCR	1 cut(s)	648
AcsI	RAATTY	2 cut(s)	22, 587
AcuI	CTGAAG	1 cut(s)	425
AfaI	GTAC	1 cut(s)	18
AfiI	CCNNNNNNNGG	2 cut(s)	26, 388
AgsI	TTSAA	6 cut(s)	362, 520, 557, 667, 715, 739
AjnI	CCWGG	1 cut(s)	595
AluBI	AGCT	5 cut(s)	37, 42, 367, 409, 674
AluI	AGCT	5 cut(s)	37, 42, 367, 409, 674
Alw26I	GTCTC	2 cut(s)	285, 573
AlwI	GGATC	2 cut(s)	62, 587
AoxI	GGCC	2 cut(s)	621, 648
ApoI	RAATTY	2 cut(s)	22, 587
Asp718I	GGTACC	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	111, 163
AsuHPI	GGTGA	5 cut(s)	37, 166, 410, 653, 694
AvaII	GGWCC	2 cut(s)	111, 163
BanI	GGYRCC	1 cut(s)	16
BbsI	GAAGAC	2 cut(s)	249, 473
BccI	CCATC	3 cut(s)	300, 605, 632
BceAI	ACGGC	1 cut(s)	512
BciT130I	CCWGG	1 cut(s)	597
BcoDI	GTCTC	2 cut(s)	285, 573
BfaI	CTAG	2 cut(s)	50, 579
BfuAI	ACCTGC	2 cut(s)	629, 727
BlpI	GCTNAGC	1 cut(s)	38
Bme1390I	CCNGG	1 cut(s)	597
Bme18I	GGWCC	2 cut(s)	111, 163
BmgT120I	GGNCC	2 cut(s)	111, 163
BmiI	GGNNCC	3 cut(s)	18, 601, 693
BmrFI	CCNGG	1 cut(s)	597
BmsI	GCATC	3 cut(s)	564, 625, 646
BpiI	GAAGAC	2 cut(s)	249, 473
BpmI	CTGGAG	1 cut(s)	298
Bpu10I	CCTNAGC	1 cut(s)	675
Bpu1102I	GCTNAGC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	573
BsaWI	WCCGGW	1 cut(s)	133
BsaXI	ACNNNNNCTCC	4 cut(s)	87, 98, 117, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 388
Bse118I	RCCGGY	1 cut(s)	646
Bse1I	ACTGG	2 cut(s)	113, 281
Bse3DI	GCAATG	1 cut(s)	200
BseBI	CCWGG	1 cut(s)	597
BseGI	GGATG	1 cut(s)	579
BseLI	CCNNNNNNNGG	2 cut(s)	26, 388
BseMI	GCAATG	1 cut(s)	200
BseMII	CTCAG	4 cut(s)	52, 335, 423, 540
BseNI	ACTGG	2 cut(s)	113, 281
BseRI	GAGGAG	1 cut(s)	69
Bsh1236I	CGCG	1 cut(s)	94
BshFI	GGCC	2 cut(s)	623, 650
BshNI	GGYRCC	1 cut(s)	16
BsiSI	CCGG	2 cut(s)	134, 647
BslFI	GGGAC	1 cut(s)	323
BslI	CCNNNNNNNGG	2 cut(s)	26, 388
BsmAI	GTCTC	2 cut(s)	285, 573
BsmFI	GGGAC	1 cut(s)	323
BsnI	GGCC	2 cut(s)	623, 650
Bso31I	GGTCTC	1 cut(s)	573
Bsp143I	GATC	4 cut(s)	67, 208, 400, 592
Bsp1720I	GCTNAGC	1 cut(s)	38
Bsp68I	TCGCGA	1 cut(s)	94
BspACI	CCGC	4 cut(s)	166, 524, 603, 659
BspANI	GGCC	2 cut(s)	623, 650
BspCNI	CTCAG	4 cut(s)	51, 334, 424, 541
BspFNI	CGCG	1 cut(s)	94
BspLI	GGNNCC	3 cut(s)	18, 601, 693
BspMI	ACCTGC	2 cut(s)	629, 727
BspPI	GGATC	2 cut(s)	62, 587
BspT107I	GGYRCC	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	573
BsrDI	GCAATG	1 cut(s)	200
BsrFI	RCCGGY	1 cut(s)	646
BsrI	ACTGG	2 cut(s)	113, 281
BssAI	RCCGGY	1 cut(s)	646
BssMI	GATC	4 cut(s)	67, 208, 400, 592
Bst2UI	CCWGG	1 cut(s)	597
Bst4CI	ACNGT	2 cut(s)	460, 472
Bst6I	CTCTTC	2 cut(s)	94, 283
BstC8I	GCNNGC	1 cut(s)	369
BstDEI	CTNAG	7 cut(s)	38, 321, 410, 432, 549, 675, 723
BstF5I	GGATG	1 cut(s)	579
BstFNI	CGCG	1 cut(s)	94
BstKTI	GATC	4 cut(s)	70, 211, 403, 595
BstMAI	GTCTC	2 cut(s)	285, 573
BstMBI	GATC	4 cut(s)	67, 208, 400, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	496, 505, 656
BstNI	CCWGG	1 cut(s)	597
BstSCI	CCNGG	1 cut(s)	595
BstUI	CGCG	1 cut(s)	94
BstV2I	GAAGAC	2 cut(s)	249, 473
BsuRI	GGCC	2 cut(s)	623, 650
BtgZI	GCGATG	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	106, 606
BtuMI	TCGCGA	1 cut(s)	94
BveI	ACCTGC	2 cut(s)	629, 727
Cac8I	GCNNGC	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	646
Cfr13I	GGNCC	2 cut(s)	111, 163
Csp6I	GTAC	1 cut(s)	17
CviAII	CATG	2 cut(s)	486, 616
CviQI	GTAC	1 cut(s)	17
DdeI	CTNAG	7 cut(s)	38, 321, 410, 432, 549, 675, 723
DpnI	GATC	4 cut(s)	69, 210, 402, 594
DpnII	GATC	4 cut(s)	67, 208, 400, 592
EaeI	YGGCCR	1 cut(s)	648
Eam1104I	CTCTTC	2 cut(s)	94, 283
EarI	CTCTTC	2 cut(s)	94, 283
EciI	GGCGGA	2 cut(s)	155, 592
Eco31I	GGTCTC	1 cut(s)	573
Eco47I	GGWCC	2 cut(s)	111, 163
Eco57I	CTGAAG	1 cut(s)	425
EcoRII	CCWGG	1 cut(s)	595
FaeI	CATG	2 cut(s)	489, 619
FaiI	YATR	6 cut(s)	333, 487, 617, 653, 707, 759
FaqI	GGGAC	1 cut(s)	323
FatI	CATG	2 cut(s)	485, 615
FblI	GTMKAC	1 cut(s)	273
FokI	GGATG	1 cut(s)	586
FspBI	CTAG	2 cut(s)	50, 579
GsuI	CTGGAG	1 cut(s)	298
HaeIII	GGCC	2 cut(s)	623, 650
HapII	CCGG	2 cut(s)	134, 647
Hin1II	CATG	2 cut(s)	489, 619
HindIII	AAGCTT	2 cut(s)	365, 407
HinfI	GANTC	5 cut(s)	76, 157, 249, 428, 536
HpaII	CCGG	2 cut(s)	134, 647
HphI	GGTGA	5 cut(s)	37, 166, 410, 653, 694
Hpy166II	GTNNAC	2 cut(s)	274, 644
Hpy188I	TCNGA	7 cut(s)	75, 145, 299, 405, 420, 433, 573
Hpy188III	TCNNGA	2 cut(s)	93, 463
Hpy8I	GTNNAC	2 cut(s)	274, 644
HpyAV	CCTTC	1 cut(s)	206
HpyCH4III	ACNGT	2 cut(s)	460, 472
HpyCH4IV	ACGT	1 cut(s)	764
HpyCH4V	TGCA	5 cut(s)	4, 127, 244, 264, 638
HpyF10VI	GCNNNNNNNGC	3 cut(s)	496, 505, 656
HpyF3I	CTNAG	7 cut(s)	38, 321, 410, 432, 549, 675, 723
HpySE526I	ACGT	1 cut(s)	764
Hsp92II	CATG	2 cut(s)	489, 619
KpnI	GGTACC	1 cut(s)	20
Kzo9I	GATC	4 cut(s)	67, 208, 400, 592
LmnI	GCTCC	1 cut(s)	391
LweI	GCATC	3 cut(s)	564, 625, 646
MaeI	CTAG	2 cut(s)	50, 579
MaeII	ACGT	1 cut(s)	764
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	4 cut(s)	69, 210, 402, 594
MboI	GATC	4 cut(s)	67, 208, 400, 592
MboII	GAAGA	5 cut(s)	81, 166, 249, 300, 478
MluCI	AATT	3 cut(s)	22, 375, 587
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	454
MnlI	CCTC	7 cut(s)	81, 90, 113, 124, 200, 429, 613
MseI	TTAA	1 cut(s)	501
MspI	CCGG	2 cut(s)	134, 647
MspR9I	CCNGG	1 cut(s)	597
MvaI	CCWGG	1 cut(s)	597
MvnI	CGCG	1 cut(s)	94
MwoI	GCNNNNNNNGC	3 cut(s)	496, 505, 656
NdeII	GATC	4 cut(s)	67, 208, 400, 592
NlaIII	CATG	2 cut(s)	489, 619
NlaIV	GGNNCC	3 cut(s)	18, 601, 693
NmuCI	GTSAC	1 cut(s)	281
NruI	TCGCGA	1 cut(s)	94
PaqCI	CACCTGC	1 cut(s)	629
PfeI	GAWTC	4 cut(s)	157, 249, 428, 536
PflMI	CCANNNNNTGG	2 cut(s)	26, 388
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PsiI	TTATAA	1 cut(s)	333
Psp6I	CCWGG	1 cut(s)	595
PspGI	CCWGG	1 cut(s)	595
PspN4I	GGNNCC	3 cut(s)	18, 601, 693
PspPI	GGNCC	2 cut(s)	111, 163
RruI	TCGCGA	1 cut(s)	94
RsaI	GTAC	1 cut(s)	18
RsaNI	GTAC	1 cut(s)	17
SaqAI	TTAA	1 cut(s)	501
Sau3AI	GATC	4 cut(s)	67, 208, 400, 592
Sau96I	GGNCC	2 cut(s)	111, 163
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	597
SfaNI	GCATC	3 cut(s)	564, 625, 646
SinI	GGWCC	2 cut(s)	111, 163
Sse9I	AATT	3 cut(s)	22, 375, 587
SsiI	CCGC	4 cut(s)	166, 524, 603, 659
SspI	AATATT	1 cut(s)	513
SspMI	CTAG	2 cut(s)	50, 579
StyD4I	CCNGG	1 cut(s)	595
TaaI	ACNGT	2 cut(s)	460, 472
TaiI	ACGT	1 cut(s)	767
TaqII	GACCGA	1 cut(s)	300
TasI	AATT	3 cut(s)	22, 375, 587
TfiI	GAWTC	4 cut(s)	157, 249, 428, 536
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	2 cut(s)	113, 613
TseFI	GTSAC	1 cut(s)	281
Tsp45I	GTSAC	1 cut(s)	281
TspRI	CASTG	2 cut(s)	113, 613
Van91I	CCANNNNNTGG	2 cut(s)	26, 388
VpaK11BI	GGWCC	2 cut(s)	111, 163
XapI	RAATTY	2 cut(s)	22, 587
XcmI	CCANNNNNNNNNTGG	2 cut(s)	470, 613
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	2 cut(s)	50, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.