Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0019082

Physical Location & Seq

Genomic Coordinates Reverse (-)

40748030 .. 40751112

Gene Structure 3083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0335800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGACATGCAGACACACCGCCAGGCGGGCTACAGCCTCAGCGTCGGATCACCTCCAGATCGCCGCCGACGCGCCGCCACGCGTCGCGCCAAGATTGCATCAGAAGCTTCTGAAACTGGGAACTGAAGCATATCAGTCCCACATCGAAAACAAGGAAGAGGTCAGCCTCCTCCTCACCTATAAAAGGAAACTTGTGTTCTACCCTAATGGAAACAAGAAGAAGAAAGTACAAAACCACAACTCACTCTACTTAGTAATGGCTGAAGCAGATTCATTACATAGTGGTTGGGTATATGTTGATTTCAGATTGTTTCTGCTCGATCAGAATAAGGGAGTCTGCTTAGTCTTTAAAGGTACTTACAGCTTCACCGACGTGTCTTCAAGTTGGGGTTGGCGTACATTTATTATAGAAAACATTTTCAGGCAACCAGACAAGGGGTTTTTGATGAATGATACTTGCGTAGTGGAAGCAGAAGTGAGTGTCCATGGAAGCAGAGGATACAAGTGGTTTTCTCCCTCTAAGAGCGTGGCCGCTCCCTTCCAGTCATGCTTGTGCACCTTGGATTTCGACCCTAGCTCTAGAAAAAGGACGGTGTGTCTATATGTACTCACTGGTTCAGTTTTCTCCACTTTTAGTACGAAATTTGAAACTGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007276 GO:0008150 GO:0009555 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0019953 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032504 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044703 GO:0048229 GO:0048232 GO:0048235 GO:0048609 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051704 GO:0055046 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C2H2_6

Protein Analysis

218

Amino Acids

24.77

Weight (kDa)

9.2

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MATH_2	PF22486	55 - 159	2.2e-19	MATH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019082)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000035419
rosa_multiflora	Rmu_sc0000640.1_g000012
rosa_roxburghii	Rroxscaffold_1G00019650
rosa_rugosa	Rorug05G0335800
rosa_samantha	Rh5AG398300 Rh5BG411200 Rh5CG436200 Rh5DG425600
rosa_wichuraiana	Rw5G037550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	533
AccII	CGCG	3 cut(s)	71, 81, 86
AciI	CCGC	5 cut(s)	18, 25, 63, 74, 531
AclWI	GGATC	1 cut(s)	54
AcoI	YGGCCR	1 cut(s)	528
AcsI	RAATTY	1 cut(s)	641
AcuI	CTGAAG	2 cut(s)	144, 282
AfaI	GTAC	5 cut(s)	228, 355, 397, 606, 637
AfiI	CCNNNNNNNGG	3 cut(s)	24, 183, 434
AflIII	ACRYGT	2 cut(s)	79, 372
AgsI	TTSAA	2 cut(s)	381, 647
AhdI	GACNNNNNGTC	1 cut(s)	594
AjiI	CACGTC	1 cut(s)	373
AjnI	CCWGG	1 cut(s)	20
AleI	CACNNNNGTG	1 cut(s)	371
AluBI	AGCT	3 cut(s)	106, 363, 576
AluI	AGCT	3 cut(s)	106, 363, 576
Alw21I	GWGCWC	1 cut(s)	557
Alw44I	GTGCAC	1 cut(s)	553
AlwI	GGATC	1 cut(s)	54
AoxI	GGCC	1 cut(s)	528
ApaLI	GTGCAC	1 cut(s)	553
ApoI	RAATTY	1 cut(s)	641
AspLEI	GCGC	2 cut(s)	73, 88
AsuHPI	GGTGA	3 cut(s)	41, 166, 358
BaeGI	GKGCMC	1 cut(s)	557
BaeI	ACNNNNGTAYC	2 cut(s)	444, 477
BbsI	GAAGAC	1 cut(s)	369
Bbv12I	GWGCWC	1 cut(s)	557
BbvCI	CCTCAGC	1 cut(s)	37
BciT130I	CCWGG	1 cut(s)	22
BciVI	GTATCC	1 cut(s)	491
BfaI	CTAG	2 cut(s)	573, 579
BfmI	CTRYAG	1 cut(s)	30
BfuI	GTATCC	1 cut(s)	491
BglI	GCCNNNNNGGC	1 cut(s)	26
BisI	GCNGC	3 cut(s)	63, 74, 531
BlsI	GCNGC	3 cut(s)	64, 75, 532
Bme1390I	CCNGG	1 cut(s)	22
BmeRI	GACNNNNNGTC	1 cut(s)	594
BmgBI	CACGTC	1 cut(s)	373
BmrFI	CCNGG	1 cut(s)	22
BmrI	ACTGGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	125
BpiI	GAAGAC	1 cut(s)	369
BpmI	CTGGAG	1 cut(s)	38
Bpu10I	CCTNAGC	1 cut(s)	37
BsaJI	CCNNGG	2 cut(s)	484, 558
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 183, 434
Bse1I	ACTGG	3 cut(s)	120, 541, 616
BseBI	CCWGG	1 cut(s)	22
BseDI	CCNNGG	2 cut(s)	484, 558
BseLI	CCNNNNNNNGG	3 cut(s)	24, 183, 434
BseMII	CTCAG	1 cut(s)	51
BseNI	ACTGG	3 cut(s)	120, 541, 616
BseRI	GAGGAG	2 cut(s)	158, 161
BseSI	GKGCMC	1 cut(s)	557
Bsh1236I	CGCG	3 cut(s)	71, 81, 86
BshFI	GGCC	1 cut(s)	530
BsiHKAI	GWGCWC	1 cut(s)	557
BslFI	GGGAC	1 cut(s)	121
BslI	CCNNNNNNNGG	3 cut(s)	24, 183, 434
BsmFI	GGGAC	1 cut(s)	121
BsnI	GGCC	1 cut(s)	530
Bsp1286I	GDGCHC	1 cut(s)	557
Bsp143I	GATC	3 cut(s)	46, 57, 319
Bsp19I	CCATGG	1 cut(s)	484
BspACI	CCGC	5 cut(s)	18, 25, 63, 74, 531
BspANI	GGCC	1 cut(s)	530
BspCNI	CTCAG	1 cut(s)	50
BspFNI	CGCG	3 cut(s)	71, 81, 86
BspPI	GGATC	1 cut(s)	54
BsrBI	CCGCTC	1 cut(s)	533
BsrI	ACTGG	3 cut(s)	120, 541, 616
BssECI	CCNNGG	2 cut(s)	484, 558
BssMI	GATC	3 cut(s)	46, 57, 319
BssT1I	CCWWGG	2 cut(s)	484, 558
Bst2UI	CCWGG	1 cut(s)	22
Bst4CI	ACNGT	1 cut(s)	592
Bst6I	CTCTTC	1 cut(s)	150
BstC8I	GCNNGC	1 cut(s)	27
BstDEI	CTNAG	4 cut(s)	37, 250, 340, 519
BstDSI	CCRYGG	1 cut(s)	484
BstENI	CCTNNNNNAGG	1 cut(s)	181
BstFNI	CGCG	3 cut(s)	71, 81, 86
BstHHI	GCGC	2 cut(s)	73, 88
BstKTI	GATC	3 cut(s)	49, 60, 322
BstMBI	GATC	3 cut(s)	46, 57, 319
BstMWI	GCNNNNNNNGC	4 cut(s)	26, 68, 94, 103
BstNI	CCWGG	1 cut(s)	22
BstNSI	RCATGY	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	20
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	557
BstUI	CGCG	3 cut(s)	71, 81, 86
BstV2I	GAAGAC	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	491
BsuRI	GGCC	1 cut(s)	530
BtgI	CCRYGG	1 cut(s)	484
BtrI	CACGTC	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	609
Cac8I	GCNNGC	1 cut(s)	27
CfoI	GCGC	2 cut(s)	73, 88
CseI	GACGC	3 cut(s)	30, 70, 77
Csp6I	GTAC	5 cut(s)	227, 354, 396, 605, 636
CviAII	CATG	3 cut(s)	6, 485, 546
CviJI	RGCY	8 cut(s)	29, 35, 106, 165, 260, 363, 530, 576
CviKI_1	RGCY	8 cut(s)	29, 35, 106, 165, 260, 363, 530, 576
CviQI	GTAC	5 cut(s)	227, 354, 396, 605, 636
DdeI	CTNAG	4 cut(s)	37, 250, 340, 519
DpnI	GATC	3 cut(s)	48, 59, 321
DpnII	GATC	3 cut(s)	46, 57, 319
DraI	TTTAAA	1 cut(s)	349
DriI	GACNNNNNGTC	1 cut(s)	594
EaeI	YGGCCR	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	150
Eam1105I	GACNNNNNGTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	484, 558
Eco57I	CTGAAG	2 cut(s)	144, 282
EcoNI	CCTNNNNNAGG	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	20
EcoT14I	CCWWGG	2 cut(s)	484, 558
ErhI	CCWWGG	2 cut(s)	484, 558
FaeI	CATG	3 cut(s)	9, 488, 549
FaqI	GGGAC	1 cut(s)	121
FatI	CATG	3 cut(s)	5, 484, 545
FauI	CCCGC	1 cut(s)	18
Fnu4HI	GCNGC	3 cut(s)	63, 74, 531
Fsp4HI	GCNGC	3 cut(s)	63, 74, 531
FspBI	CTAG	2 cut(s)	573, 579
GlaI	GCGC	2 cut(s)	72, 87
GluI	GCNGC	3 cut(s)	63, 74, 531
GsuI	CTGGAG	1 cut(s)	38
HaeIII	GGCC	1 cut(s)	530
HgaI	GACGC	3 cut(s)	30, 70, 77
HhaI	GCGC	2 cut(s)	73, 88
Hin1II	CATG	3 cut(s)	9, 488, 549
Hin6I	GCGC	2 cut(s)	71, 86
HinP1I	GCGC	2 cut(s)	71, 86
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	269, 333
HphI	GGTGA	3 cut(s)	41, 166, 358
Hpy166II	GTNNAC	1 cut(s)	555
Hpy188I	TCNGA	5 cut(s)	46, 102, 111, 305, 324
Hpy188III	TCNNGA	2 cut(s)	55, 579
Hpy8I	GTNNAC	1 cut(s)	555
Hpy99I	CGWCG	4 cut(s)	46, 71, 86, 374
HpyAV	CCTTC	1 cut(s)	547
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	3 cut(s)	9, 97, 555
HpyF10VI	GCNNNNNNNGC	4 cut(s)	26, 68, 94, 103
HpyF3I	CTNAG	4 cut(s)	37, 250, 340, 519
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	3 cut(s)	9, 488, 549
HspAI	GCGC	2 cut(s)	71, 86
Kzo9I	GATC	3 cut(s)	46, 57, 319
LmnI	GCTCC	1 cut(s)	538
LpnPI	CCDG	8 cut(s)	7, 34, 68, 101, 406, 441, 554, 597
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	2 cut(s)	573, 579
MaeII	ACGT	1 cut(s)	372
MalI	GATC	3 cut(s)	48, 59, 321
MbiI	CCGCTC	1 cut(s)	533
MboI	GATC	3 cut(s)	46, 57, 319
MboII	GAAGA	4 cut(s)	167, 229, 232, 369
MhlI	GDGCHC	1 cut(s)	557
MluCI	AATT	1 cut(s)	641
MluI	ACGCGT	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	24
MnlI	CCTC	8 cut(s)	46, 62, 151, 176, 179, 182, 488, 526
MseI	TTAA	2 cut(s)	348, 655
MslI	CAYNNNNRTG	2 cut(s)	371, 550
MspR9I	CCNGG	1 cut(s)	22
MvaI	CCWGG	1 cut(s)	22
MvnI	CGCG	3 cut(s)	71, 81, 86
MwoI	GCNNNNNNNGC	4 cut(s)	26, 68, 94, 103
NcoI	CCATGG	1 cut(s)	484
NdeII	GATC	3 cut(s)	46, 57, 319
NlaIII	CATG	3 cut(s)	9, 488, 549
NspI	RCATGY	1 cut(s)	9
OliI	CACNNNNGTG	1 cut(s)	371
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	3 cut(s)	64, 75, 532
PleI	GAGTC	1 cut(s)	341
PpsI	GAGTC	1 cut(s)	341
Psp6I	CCWGG	1 cut(s)	20
PspGI	CCWGG	1 cut(s)	20
RsaI	GTAC	5 cut(s)	228, 355, 397, 606, 637
RsaNI	GTAC	5 cut(s)	227, 354, 396, 605, 636
RseI	CAYNNNNRTG	2 cut(s)	371, 550
SaqAI	TTAA	2 cut(s)	348, 655
SatI	GCNGC	3 cut(s)	63, 74, 531
Sau3AI	GATC	3 cut(s)	46, 57, 319
SchI	GAGTC	1 cut(s)	342
ScrFI	CCNGG	1 cut(s)	22
SduI	GDGCHC	1 cut(s)	557
SetI	ASST	9 cut(s)	54, 108, 162, 179, 355, 365, 375, 560, 578
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	2 cut(s)	371, 550
Sse9I	AATT	1 cut(s)	641
SsiI	CCGC	5 cut(s)	18, 25, 63, 74, 531
SspMI	CTAG	2 cut(s)	573, 579
StyD4I	CCNGG	1 cut(s)	20
StyI	CCWWGG	2 cut(s)	484, 558
TaaI	ACNGT	1 cut(s)	592
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	3 cut(s)	144, 318, 567
TasI	AATT	1 cut(s)	641
TatI	WGTACW	2 cut(s)	226, 604
TauI	GCSGC	3 cut(s)	65, 76, 533
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	348, 655
Tru9I	TTAA	2 cut(s)	348, 655
TscAI	CASTG	1 cut(s)	616
TspDTI	ATGAA	2 cut(s)	261, 461
TspRI	CASTG	1 cut(s)	616
VneI	GTGCAC	1 cut(s)	553
XagI	CCTNNNNNAGG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	641
XbaI	TCTAGA	1 cut(s)	578
XceI	RCATGY	1 cut(s)	9
XspI	CTAG	2 cut(s)	573, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.