ZINC FINGER protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000035419 |
| rosa_multiflora | Rmu_sc0000640.1_g000012 |
| rosa_roxburghii | Rroxscaffold_1G00019650 |
| rosa_rugosa | Rorug05G0335800 |
| rosa_samantha | Rh5AG398300 Rh5BG411200 Rh5CG436200 Rh5DG425600 |
| rosa_wichuraiana | Rw5G037550 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 2 cut(s) | 842, 956 |
| AccB1I | GGYRCC | 4 cut(s) | 214, 842, 956, 1395 |
| AccI | GTMKAC | 1 cut(s) | 1230 |
| AciI | CCGC | 1 cut(s) | 177 |
| AcoI | YGGCCR | 2 cut(s) | 157, 1126 |
| AcsI | RAATTY | 3 cut(s) | 322, 339, 1086 |
| AcuI | CTGAAG | 4 cut(s) | 164, 249, 1371, 1410 |
| AcyI | GRCGYC | 2 cut(s) | 215, 1396 |
| AfaI | GTAC | 8 cut(s) | 508, 534, 606, 844, 868, 958, 1012, 1042 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1435 |
| AgsI | TTSAA | 4 cut(s) | 154, 633, 877, 1414 |
| AhlI | ACTAGT | 1 cut(s) | 1037 |
| AjnI | CCWGG | 1 cut(s) | 197 |
| AleI | CACNNNNGTG | 1 cut(s) | 1248 |
| AluBI | AGCT | 9 cut(s) | 132, 312, 706, 755, 780, 1052, 1172, 1286, 1451 |
| AluI | AGCT | 9 cut(s) | 132, 312, 706, 755, 780, 1052, 1172, 1286, 1451 |
| Alw21I | GWGCWC | 2 cut(s) | 1033, 1312 |
| Alw26I | GTCTC | 4 cut(s) | 43, 669, 764, 1214 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1184 |
| AoxI | GGCC | 7 cut(s) | 157, 200, 353, 362, 1126, 1240, 1380 |
| ApoI | RAATTY | 3 cut(s) | 322, 339, 1086 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 131, 520, 565 |
| Asp718I | GGTACC | 2 cut(s) | 842, 956 |
| AspLEI | GCGC | 2 cut(s) | 217, 1398 |
| AspS9I | GGNCC | 3 cut(s) | 353, 362, 1380 |
| AsuC2I | CCSGG | 1 cut(s) | 700 |
| AsuHPI | GGTGA | 7 cut(s) | 602, 671, 839, 896, 953, 1007, 1229 |
| AsuII | TTCGAA | 1 cut(s) | 1148 |
| AxyI | CCTNAGG | 1 cut(s) | 1185 |
| BalI | TGGCCA | 1 cut(s) | 1128 |
| BanI | GGYRCC | 4 cut(s) | 214, 842, 956, 1395 |
| BauI | CACGAG | 1 cut(s) | 1026 |
| BbsI | GAAGAC | 5 cut(s) | 21, 237, 423, 669, 1350 |
| Bbv12I | GWGCWC | 2 cut(s) | 1033, 1312 |
| BccI | CCATC | 6 cut(s) | 232, 245, 497, 1208, 1322, 1439 |
| BceAI | ACGGC | 2 cut(s) | 172, 190 |
| BciT130I | CCWGG | 1 cut(s) | 199 |
| BclI | TGATCA | 3 cut(s) | 64, 592, 1318 |
| BcnI | CCSGG | 1 cut(s) | 700 |
| BcoDI | GTCTC | 4 cut(s) | 43, 669, 764, 1214 |
| BcuI | ACTAGT | 1 cut(s) | 1037 |
| BfaI | CTAG | 4 cut(s) | 264, 807, 1038, 1263 |
| BfmI | CTRYAG | 3 cut(s) | 707, 1053, 1176 |
| BfoI | RGCGCY | 2 cut(s) | 218, 1399 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 361 |
| BmcAI | AGTACT | 1 cut(s) | 1042 |
| Bme1390I | CCNGG | 2 cut(s) | 199, 700 |
| BmgT120I | GGNCC | 3 cut(s) | 353, 362, 1380 |
| BmiI | GGNNCC | 7 cut(s) | 216, 222, 462, 844, 958, 1381, 1397 |
| BmrFI | CCNGG | 2 cut(s) | 199, 700 |
| BmsI | GCATC | 1 cut(s) | 146 |
| BpiI | GAAGAC | 5 cut(s) | 21, 237, 423, 669, 1350 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1270, 1302 |
| BpmI | CTGGAG | 1 cut(s) | 570 |
| Bpu14I | TTCGAA | 1 cut(s) | 1148 |
| BpuEI | CTTGAG | 1 cut(s) | 1221 |
| BpuMI | CCSGG | 1 cut(s) | 700 |
| BsaHI | GRCGYC | 2 cut(s) | 215, 1396 |
| BsaJI | CCNNGG | 3 cut(s) | 172, 189, 365 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1240, 1270 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1435 |
| Bse118I | RCCGGY | 2 cut(s) | 420, 457 |
| Bse1I | ACTGG | 3 cut(s) | 517, 523, 1228 |
| Bse21I | CCTNAGG | 1 cut(s) | 1185 |
| Bse3DI | GCAATG | 4 cut(s) | 121, 398, 459, 1358 |
| BseBI | CCWGG | 1 cut(s) | 199 |
| BseDI | CCNNGG | 3 cut(s) | 172, 189, 365 |
| BseGI | GGATG | 3 cut(s) | 272, 482, 1450 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1435 |
| BseMI | GCAATG | 4 cut(s) | 121, 398, 459, 1358 |
| BseMII | CTCAG | 1 cut(s) | 1176 |
| BseNI | ACTGG | 3 cut(s) | 517, 523, 1228 |
| BseRI | GAGGAG | 1 cut(s) | 1170 |
| BseYI | CCCAGC | 1 cut(s) | 751 |
| BsgI | GTGCAG | 1 cut(s) | 1278 |
| BshFI | GGCC | 7 cut(s) | 159, 202, 355, 364, 1128, 1242, 1382 |
| BshNI | GGYRCC | 4 cut(s) | 214, 842, 956, 1395 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1033, 1312 |
| BsiSI | CCGG | 5 cut(s) | 212, 218, 421, 458, 700 |
| BslFI | GGGAC | 1 cut(s) | 1412 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1435 |
| BsmAI | GTCTC | 4 cut(s) | 43, 669, 764, 1214 |
| BsmFI | GGGAC | 1 cut(s) | 1412 |
| BsnI | GGCC | 7 cut(s) | 159, 202, 355, 364, 1128, 1242, 1382 |
| Bsp119I | TTCGAA | 1 cut(s) | 1148 |
| Bsp1286I | GDGCHC | 2 cut(s) | 1033, 1312 |
| Bsp143I | GATC | 4 cut(s) | 64, 592, 800, 1318 |
| BspACI | CCGC | 1 cut(s) | 177 |
| BspANI | GGCC | 7 cut(s) | 159, 202, 355, 364, 1128, 1242, 1382 |
| BspCNI | CTCAG | 1 cut(s) | 1177 |
| BspHI | TCATGA | 3 cut(s) | 82, 1207, 1321 |
| BspLI | GGNNCC | 7 cut(s) | 216, 222, 462, 844, 958, 1381, 1397 |
| BspMAI | CTGCAG | 2 cut(s) | 711, 1057 |
| BspT104I | TTCGAA | 1 cut(s) | 1148 |
| BspT107I | GGYRCC | 4 cut(s) | 214, 842, 956, 1395 |
| BsrDI | GCAATG | 4 cut(s) | 121, 398, 459, 1358 |
| BsrFI | RCCGGY | 2 cut(s) | 420, 457 |
| BsrI | ACTGG | 3 cut(s) | 517, 523, 1228 |
| BssAI | RCCGGY | 2 cut(s) | 420, 457 |
| BssECI | CCNNGG | 3 cut(s) | 172, 189, 365 |
| BssMI | GATC | 4 cut(s) | 64, 592, 800, 1318 |
| BssNI | GRCGYC | 2 cut(s) | 215, 1396 |
| BssSI | CACGAG | 1 cut(s) | 1026 |
| BssT1I | CCWWGG | 2 cut(s) | 189, 365 |
| Bst2BI | CACGAG | 1 cut(s) | 1026 |
| Bst2UI | CCWGG | 1 cut(s) | 199 |
| Bst4CI | ACNGT | 1 cut(s) | 1314 |
| Bst6I | CTCTTC | 3 cut(s) | 39, 41, 1261 |
| BstACI | GRCGYC | 2 cut(s) | 215, 1396 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 120 |
| BstBI | TTCGAA | 1 cut(s) | 1148 |
| BstC8I | GCNNGC | 1 cut(s) | 310 |
| BstDEI | CTNAG | 3 cut(s) | 903, 1014, 1185 |
| BstDSI | CCRYGG | 1 cut(s) | 172 |
| BstF5I | GGATG | 3 cut(s) | 272, 482, 1450 |
| BstH2I | RGCGCY | 2 cut(s) | 218, 1399 |
| BstHHI | GCGC | 2 cut(s) | 217, 1398 |
| BstKTI | GATC | 4 cut(s) | 67, 595, 803, 1321 |
| BstMAI | GTCTC | 4 cut(s) | 43, 669, 764, 1214 |
| BstMBI | GATC | 4 cut(s) | 64, 592, 800, 1318 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 120, 129, 361, 761, 1028, 1089, 1169, 1178, 1292 |
| BstNI | CCWGG | 1 cut(s) | 199 |
| BstNSI | RCATGY | 1 cut(s) | 1079 |
| BstSCI | CCNGG | 2 cut(s) | 197, 698 |
| BstSFI | CTRYAG | 3 cut(s) | 707, 1053, 1176 |
| BstV2I | GAAGAC | 5 cut(s) | 21, 237, 423, 669, 1350 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1185 |
| BsuRI | GGCC | 7 cut(s) | 159, 202, 355, 364, 1128, 1242, 1382 |
| BtgI | CCRYGG | 1 cut(s) | 172 |
| BtsCI | GGATG | 3 cut(s) | 272, 482, 1450 |
| BtsI | GCAGTG | 2 cut(s) | 103, 1062 |
| BtsIMutI | CAGTG | 4 cut(s) | 103, 140, 1062, 1281 |
| Cac8I | GCNNGC | 1 cut(s) | 310 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1184 |
| CciI | TCATGA | 3 cut(s) | 82, 1207, 1321 |
| CfoI | GCGC | 2 cut(s) | 217, 1398 |
| Cfr10I | RCCGGY | 2 cut(s) | 420, 457 |
| Cfr13I | GGNCC | 3 cut(s) | 353, 362, 1380 |
| Csp6I | GTAC | 8 cut(s) | 507, 533, 605, 843, 867, 957, 1011, 1041 |
| CviQI | GTAC | 8 cut(s) | 507, 533, 605, 843, 867, 957, 1011, 1041 |
| DdeI | CTNAG | 3 cut(s) | 903, 1014, 1185 |
| DinI | GGCGCC | 2 cut(s) | 216, 1397 |
| DpnI | GATC | 4 cut(s) | 66, 594, 802, 1320 |
| DpnII | GATC | 4 cut(s) | 64, 592, 800, 1318 |
| EaeI | YGGCCR | 2 cut(s) | 157, 1126 |
| Eam1104I | CTCTTC | 3 cut(s) | 39, 41, 1261 |
| EarI | CTCTTC | 3 cut(s) | 39, 41, 1261 |
| EciI | GGCGGA | 1 cut(s) | 192 |
| Eco130I | CCWWGG | 2 cut(s) | 189, 365 |
| Eco147I | AGGCCT | 1 cut(s) | 202 |
| Eco32I | GATATC | 1 cut(s) | 334 |
| Eco57I | CTGAAG | 4 cut(s) | 164, 249, 1371, 1410 |
| Eco81I | CCTNAGG | 1 cut(s) | 1185 |
| EcoRII | CCWGG | 1 cut(s) | 197 |
| EcoRV | GATATC | 1 cut(s) | 334 |
| EcoT14I | CCWWGG | 2 cut(s) | 189, 365 |
| EgeI | GGCGCC | 2 cut(s) | 216, 1397 |
| EheI | GGCGCC | 2 cut(s) | 216, 1397 |
| ErhI | CCWWGG | 2 cut(s) | 189, 365 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 408, 440, 550, 582 |
| FaqI | GGGAC | 1 cut(s) | 1412 |
| FbaI | TGATCA | 3 cut(s) | 64, 592, 1318 |
| FblI | GTMKAC | 1 cut(s) | 1230 |
| FokI | GGATG | 2 cut(s) | 259, 469 |
| FspBI | CTAG | 4 cut(s) | 264, 807, 1038, 1263 |
| GlaI | GCGC | 2 cut(s) | 216, 1397 |
| GsaI | CCCAGC | 1 cut(s) | 755 |
| GsuI | CTGGAG | 1 cut(s) | 570 |
| HaeII | RGCGCY | 2 cut(s) | 218, 1399 |
| HaeIII | GGCC | 7 cut(s) | 159, 202, 355, 364, 1128, 1242, 1382 |
| HapII | CCGG | 5 cut(s) | 212, 218, 421, 458, 700 |
| HhaI | GCGC | 2 cut(s) | 217, 1398 |
| Hin1I | GRCGYC | 2 cut(s) | 215, 1396 |
| Hin6I | GCGC | 2 cut(s) | 215, 1396 |
| HinP1I | GCGC | 2 cut(s) | 215, 1396 |
| HincII | GTYRAC | 1 cut(s) | 301 |
| HindII | GTYRAC | 1 cut(s) | 301 |
| HindIII | AAGCTT | 2 cut(s) | 130, 310 |
| HinfI | GANTC | 8 cut(s) | 712, 734, 830, 887, 944, 998, 1138, 1439 |
| HpaII | CCGG | 5 cut(s) | 212, 218, 421, 458, 700 |
| HphI | GGTGA | 7 cut(s) | 602, 671, 839, 896, 953, 1007, 1229 |
| Hpy166II | GTNNAC | 2 cut(s) | 301, 1231 |
| Hpy188I | TCNGA | 6 cut(s) | 229, 277, 345, 1193, 1318, 1444 |
| Hpy188III | TCNNGA | 4 cut(s) | 83, 1208, 1263, 1322 |
| Hpy8I | GTNNAC | 2 cut(s) | 301, 1231 |
| HpyAV | CCTTC | 8 cut(s) | 80, 139, 368, 442, 489, 631, 757, 1385 |
| HpyCH4III | ACNGT | 1 cut(s) | 1314 |
| HpyCH4IV | ACGT | 2 cut(s) | 303, 1100 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 120, 129, 361, 761, 1028, 1089, 1169, 1178, 1292 |
| HpyF3I | CTNAG | 3 cut(s) | 903, 1014, 1185 |
| HpySE526I | ACGT | 2 cut(s) | 303, 1100 |
| Hsp92I | GRCGYC | 2 cut(s) | 215, 1396 |
| HspAI | GCGC | 2 cut(s) | 215, 1396 |
| KasI | GGCGCC | 2 cut(s) | 214, 1395 |
| KpnI | GGTACC | 2 cut(s) | 846, 960 |
| Ksp22I | TGATCA | 3 cut(s) | 64, 592, 1318 |
| Kzo9I | GATC | 4 cut(s) | 64, 592, 800, 1318 |
| LmnI | GCTCC | 4 cut(s) | 1036, 1177, 1291, 1448 |
| LweI | GCATC | 1 cut(s) | 146 |
| MaeI | CTAG | 4 cut(s) | 264, 807, 1038, 1263 |
| MaeII | ACGT | 2 cut(s) | 303, 1100 |
| MalI | GATC | 4 cut(s) | 66, 594, 802, 1320 |
| MboI | GATC | 4 cut(s) | 64, 592, 800, 1318 |
| MhlI | GDGCHC | 2 cut(s) | 1033, 1312 |
| MlsI | TGGCCA | 1 cut(s) | 1128 |
| MluCI | AATT | 6 cut(s) | 322, 339, 498, 784, 1086, 1144 |
| MluNI | TGGCCA | 1 cut(s) | 1128 |
| Mly113I | GGCGCC | 2 cut(s) | 215, 1396 |
| MlyI | GAGTC | 1 cut(s) | 743 |
| MmeI | TCCRAC | 1 cut(s) | 365 |
| Mox20I | TGGCCA | 1 cut(s) | 1128 |
| MroXI | GAANNNNTTC | 3 cut(s) | 131, 520, 565 |
| MscI | TGGCCA | 1 cut(s) | 1128 |
| MseI | TTAA | 2 cut(s) | 1104, 1456 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1212, 1248, 1326 |
| Msp20I | TGGCCA | 1 cut(s) | 1128 |
| MspA1I | CMGCKG | 1 cut(s) | 780 |
| MspI | CCGG | 5 cut(s) | 212, 218, 421, 458, 700 |
| MspR9I | CCNGG | 2 cut(s) | 199, 700 |
| MvaI | CCWGG | 1 cut(s) | 199 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 120, 129, 361, 761, 1028, 1089, 1169, 1178, 1292 |
| NarI | GGCGCC | 2 cut(s) | 215, 1396 |
| NciI | CCSGG | 1 cut(s) | 700 |
| NdeII | GATC | 4 cut(s) | 64, 592, 800, 1318 |
| NlaIV | GGNNCC | 7 cut(s) | 216, 222, 462, 844, 958, 1381, 1397 |
| NspI | RCATGY | 1 cut(s) | 1079 |
| NspV | TTCGAA | 1 cut(s) | 1148 |
| OliI | CACNNNNGTG | 1 cut(s) | 1248 |
| PagI | TCATGA | 3 cut(s) | 82, 1207, 1321 |
| PceI | AGGCCT | 1 cut(s) | 202 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 809 |
| PdmI | GAANNNNTTC | 3 cut(s) | 131, 520, 565 |
| PfeI | GAWTC | 7 cut(s) | 712, 830, 887, 944, 998, 1138, 1439 |
| PleI | GAGTC | 1 cut(s) | 742 |
| PluTI | GGCGCC | 2 cut(s) | 218, 1399 |
| PpsI | GAGTC | 1 cut(s) | 742 |
| Psp6I | CCWGG | 1 cut(s) | 197 |
| PspFI | CCCAGC | 1 cut(s) | 751 |
| PspGI | CCWGG | 1 cut(s) | 197 |
| PspN4I | GGNNCC | 7 cut(s) | 216, 222, 462, 844, 958, 1381, 1397 |
| PspPI | GGNCC | 3 cut(s) | 353, 362, 1380 |
| PstI | CTGCAG | 2 cut(s) | 711, 1057 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1184 |
| PvuII | CAGCTG | 1 cut(s) | 780 |
| RsaI | GTAC | 8 cut(s) | 508, 534, 606, 844, 868, 958, 1012, 1042 |
| RsaNI | GTAC | 8 cut(s) | 507, 533, 605, 843, 867, 957, 1011, 1041 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1212, 1248, 1326 |
| SaqAI | TTAA | 2 cut(s) | 1104, 1456 |
| Sau3AI | GATC | 4 cut(s) | 64, 592, 800, 1318 |
| Sau96I | GGNCC | 3 cut(s) | 353, 362, 1380 |
| ScaI | AGTACT | 1 cut(s) | 1042 |
| SchI | GAGTC | 1 cut(s) | 743 |
| ScrFI | CCNGG | 2 cut(s) | 199, 700 |
| SduI | GDGCHC | 2 cut(s) | 1033, 1312 |
| SfaNI | GCATC | 1 cut(s) | 146 |
| SfcI | CTRYAG | 3 cut(s) | 707, 1053, 1176 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 361 |
| SfoI | GGCGCC | 2 cut(s) | 216, 1397 |
| SfuI | TTCGAA | 1 cut(s) | 1148 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1212, 1248, 1326 |
| SmlI | CTYRAG | 1 cut(s) | 1236 |
| SmoI | CTYRAG | 1 cut(s) | 1236 |
| SpeI | ACTAGT | 1 cut(s) | 1037 |
| Sse9I | AATT | 6 cut(s) | 322, 339, 498, 784, 1086, 1144 |
| SseBI | AGGCCT | 1 cut(s) | 202 |
| SsiI | CCGC | 1 cut(s) | 177 |
| SspDI | GGCGCC | 2 cut(s) | 214, 1395 |
| SspI | AATATT | 1 cut(s) | 628 |
| SspMI | CTAG | 4 cut(s) | 264, 807, 1038, 1263 |
| StuI | AGGCCT | 1 cut(s) | 202 |
| StyD4I | CCNGG | 2 cut(s) | 197, 698 |
| StyI | CCWWGG | 2 cut(s) | 189, 365 |
| TaaI | ACNGT | 1 cut(s) | 1314 |
| TaiI | ACGT | 2 cut(s) | 306, 1103 |
| TaqI | TCGA | 2 cut(s) | 336, 1148 |
| TasI | AATT | 6 cut(s) | 322, 339, 498, 784, 1086, 1144 |
| TatI | WGTACW | 1 cut(s) | 1040 |
| TfiI | GAWTC | 7 cut(s) | 712, 830, 887, 944, 998, 1138, 1439 |
| Tru1I | TTAA | 2 cut(s) | 1104, 1456 |
| Tru9I | TTAA | 2 cut(s) | 1104, 1456 |
| TscAI | CASTG | 4 cut(s) | 103, 147, 1062, 1281 |
| TspGWI | ACGGA | 2 cut(s) | 195, 782 |
| TspRI | CASTG | 4 cut(s) | 103, 147, 1062, 1281 |
| XapI | RAATTY | 3 cut(s) | 322, 339, 1086 |
| XbaI | TCTAGA | 1 cut(s) | 1262 |
| XceI | RCATGY | 1 cut(s) | 1079 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 676, 1250 |
| XmiI | GTMKAC | 1 cut(s) | 1230 |
| XmnI | GAANNNNTTC | 3 cut(s) | 131, 520, 565 |
| XspI | CTAG | 4 cut(s) | 264, 807, 1038, 1263 |
| ZrmI | AGTACT | 1 cut(s) | 1042 |