Rw5G037550

ZINC FINGER protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
66156241 .. 66157698
1458 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G037550.1

Sequence Viewer

Length: 1458 bp
ATGGACGACAATGAAGACGAACAGACAAGTTCTCTTCCTCCCAAGAAGAGACTGAAACAACATGATCATCGTCAGCCTAATCATGAAGGCAGCAGCAGTGAAATCCACTCTTGCAATGTCTGCCAGAAAAGCTTCGCATCACTCAAGGCTTTGAACGGCCACATGAAAATCCACGGCGGAAGCAAGTCCAAGGCTGCCAGGCCTCCGTTTCCGGCGCCGGAACCATCTGAAGACAAAGGCAAAGACGATGATGGTGTTAGTGCTAGTAGTTCATCCGATACCAACATACAGAAAGATGTTGACGTAGCAAGCTTCTTGCAAAATTTGAGCGATATCGAAATTCAGAGAAACGGGCCAGACGGGCCAAGGCAAGAAGGGTATTGTTGGAAGCAATGCAGTAGAGATAACAATGCAGAAGACCGGCTTGGTTATGGAGTTTCAGGGAAGAAGGCAATGCCGGTTCCATACAAGGACAACCCTTCATCCAAGAAAGTGAAAATTGATGGTACAACTGGAACTGGTTCTGCTTTGGTACAGAAGAAGTTGGCTGGAGGTAAAAGAAAGGCTTCTGTGGAAGATGATGAGAAAGGTGATCAAAGCAGAGTACCAAAAGATTTCACAAGTAATATTTCAAAGAAGGTAAAGATTGTTGGCAGAGGTGAAGACCCCAAAAGAGACATGGTTTCACATGACCAAACCCGGAAGCTGCAGATTCCAAGAAAGCCCCAAGTTGAGTCAAGTAAAACCTTCCCAGCTTCACAAGCAACGGCGACTTTCAGCTGGAATTGTAAAAGTAGCAGATCGGCTAGTGCGAGTGTGAAAATAGGTGAATCTGGGTTTGGTACCAAGTATGCTGCAAAGAGTAGCACGAGTTTGAAAATAGGTGAATCTGGGTTTGGTGCTAAGTATGGAACAAAGAGTAATACGAGTGTAAAAATGGGTGAATCTGTGTTTGGTACCAAGTATGCAAAGAGTAATACGAGTGTAAAAGTGGGTGAATCTGGGTTTGGTACTAAGTTGGCTGCTCGTGCTCCTACTAGTACTAAAGAAGCTGCAGTGGAGGATAGCAAACAGCATGTGTGCGAAATTTGCCACAGGACGTTTAAGACTTATCAGGGTCTTGGTGGCCACAGGAGGATTCATAATTCGAAAGGAGGAGTGGCGAAAGAAGCTCCTACAGCACCTGAGGTCAGAGCAGCGACAGGTCATGAAGATGGTGAGACTGGTGTAGACCCTCAAGGCCACAGGAGTGTTGGTAGTTCTAGAAGAGTATCAGTGAGAAAAGCTCCTGCTGCACCTGTGGTTAGAGCACCGTCTGATCATGAAGATGGTGGGAGTGATGAAGACCCTGAAGCAGCATTGCATGAAGAAGAAGCAGGGGCCAAAACTGAAGGGCGCCATGAAAGAGGTTTCAATCTCAACCAAGTCCCAGATGAGGATTCGGATGGAGCTGCTTAA

Protein Analysis

485

Amino Acids

51.88

Weight (kDa)

8.95

Isoelectric Point (pI)

48.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2H2_6 PF13912 36 - 58 2.4e-07 C2H2-type zinc finger
zf-C2H2_6 PF13912 359 - 382 2.4e-07 C2H2-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019082)

Species Orthologous Gene IDs
rosa_laevigata RLG00000035419
rosa_multiflora Rmu_sc0000640.1_g000012
rosa_roxburghii Rroxscaffold_1G00019650
rosa_rugosa Rorug05G0335800
rosa_samantha Rh5AG398300 Rh5BG411200 Rh5CG436200 Rh5DG425600
rosa_wichuraiana Rw5G037550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 842, 956
AccB1I GGYRCC 4 cut(s) 214, 842, 956, 1395
AccI GTMKAC 1 cut(s) 1230
AciI CCGC 1 cut(s) 177
AcoI YGGCCR 2 cut(s) 157, 1126
AcsI RAATTY 3 cut(s) 322, 339, 1086
AcuI CTGAAG 3 cut(s) 249, 1371, 1410
AcyI GRCGYC 2 cut(s) 215, 1396
AfaI GTAC 7 cut(s) 508, 534, 606, 844, 958, 1012, 1042
AfiI CCNNNNNNNGG 1 cut(s) 1435
AgsI TTSAA 4 cut(s) 154, 633, 877, 1414
AhlI ACTAGT 1 cut(s) 1037
AjnI CCWGG 1 cut(s) 197
AleI CACNNNNGTG 1 cut(s) 1248
AluBI AGCT 9 cut(s) 132, 312, 706, 755, 780, 1052, 1172, 1286, 1451
AluI AGCT 9 cut(s) 132, 312, 706, 755, 780, 1052, 1172, 1286, 1451
Alw21I GWGCWC 2 cut(s) 1033, 1312
Alw26I GTCTC 3 cut(s) 43, 669, 1214
AlwNI CAGNNNCTG 1 cut(s) 1184
AoxI GGCC 7 cut(s) 157, 200, 353, 362, 1126, 1240, 1380
ApoI RAATTY 3 cut(s) 322, 339, 1086
Asp700I GAANNNNTTC 3 cut(s) 131, 520, 565
Asp718I GGTACC 2 cut(s) 842, 956
AspLEI GCGC 2 cut(s) 217, 1398
AspS9I GGNCC 3 cut(s) 353, 362, 1380
AsuC2I CCSGG 1 cut(s) 700
AsuHPI GGTGA 7 cut(s) 602, 671, 839, 896, 953, 1007, 1229
AsuII TTCGAA 1 cut(s) 1148
AxyI CCTNAGG 1 cut(s) 1185
BalI TGGCCA 1 cut(s) 1128
BanI GGYRCC 4 cut(s) 214, 842, 956, 1395
BauI CACGAG 2 cut(s) 868, 1026
BbsI GAAGAC 5 cut(s) 21, 237, 423, 669, 1350
Bbv12I GWGCWC 2 cut(s) 1033, 1312
BccI CCATC 6 cut(s) 232, 245, 497, 1208, 1322, 1439
BceAI ACGGC 3 cut(s) 172, 190, 783
BciT130I CCWGG 1 cut(s) 199
BclI TGATCA 3 cut(s) 64, 592, 1318
BcnI CCSGG 1 cut(s) 700
BcoDI GTCTC 3 cut(s) 43, 669, 1214
BcuI ACTAGT 1 cut(s) 1037
BfaI CTAG 4 cut(s) 264, 807, 1038, 1263
BfmI CTRYAG 3 cut(s) 707, 1053, 1176
BfoI RGCGCY 2 cut(s) 218, 1399
BglI GCCNNNNNGGC 1 cut(s) 361
BmcAI AGTACT 1 cut(s) 1042
Bme1390I CCNGG 2 cut(s) 199, 700
BmgT120I GGNCC 3 cut(s) 353, 362, 1380
BmiI GGNNCC 7 cut(s) 216, 222, 462, 844, 958, 1381, 1397
BmrFI CCNGG 2 cut(s) 199, 700
BmsI GCATC 1 cut(s) 146
BpiI GAAGAC 5 cut(s) 21, 237, 423, 669, 1350
BplI GAGNNNNNCTC 2 cut(s) 1270, 1302
BpmI CTGGAG 1 cut(s) 570
Bpu14I TTCGAA 1 cut(s) 1148
BpuEI CTTGAG 2 cut(s) 128, 1221
BpuMI CCSGG 1 cut(s) 700
BsaHI GRCGYC 2 cut(s) 215, 1396
BsaJI CCNNGG 3 cut(s) 172, 189, 365
BsaXI ACNNNNNCTCC 2 cut(s) 1240, 1270
Bsc4I CCNNNNNNNGG 1 cut(s) 1435
Bse118I RCCGGY 2 cut(s) 420, 457
Bse1I ACTGG 3 cut(s) 517, 523, 1228
Bse21I CCTNAGG 1 cut(s) 1185
Bse3DI GCAATG 4 cut(s) 121, 398, 459, 1358
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 3 cut(s) 172, 189, 365
BseGI GGATG 3 cut(s) 272, 482, 1450
BseLI CCNNNNNNNGG 1 cut(s) 1435
BseMI GCAATG 4 cut(s) 121, 398, 459, 1358
BseMII CTCAG 1 cut(s) 1176
BseNI ACTGG 3 cut(s) 517, 523, 1228
BseRI GAGGAG 1 cut(s) 1170
BseYI CCCAGC 1 cut(s) 751
BsgI GTGCAG 1 cut(s) 1278
BshFI GGCC 7 cut(s) 159, 202, 355, 364, 1128, 1242, 1382
BshNI GGYRCC 4 cut(s) 214, 842, 956, 1395
BsiHKAI GWGCWC 2 cut(s) 1033, 1312
BsiSI CCGG 5 cut(s) 212, 218, 421, 458, 700
BslFI GGGAC 1 cut(s) 1412
BslI CCNNNNNNNGG 1 cut(s) 1435
BsmAI GTCTC 3 cut(s) 43, 669, 1214
BsmFI GGGAC 1 cut(s) 1412
BsnI GGCC 7 cut(s) 159, 202, 355, 364, 1128, 1242, 1382
Bsp119I TTCGAA 1 cut(s) 1148
Bsp1286I GDGCHC 2 cut(s) 1033, 1312
Bsp143I GATC 4 cut(s) 64, 592, 800, 1318
BspACI CCGC 1 cut(s) 177
BspANI GGCC 7 cut(s) 159, 202, 355, 364, 1128, 1242, 1382
BspCNI CTCAG 1 cut(s) 1177
BspHI TCATGA 3 cut(s) 82, 1207, 1321
BspLI GGNNCC 7 cut(s) 216, 222, 462, 844, 958, 1381, 1397
BspMAI CTGCAG 2 cut(s) 711, 1057
BspT104I TTCGAA 1 cut(s) 1148
BspT107I GGYRCC 4 cut(s) 214, 842, 956, 1395
BsrDI GCAATG 4 cut(s) 121, 398, 459, 1358
BsrFI RCCGGY 2 cut(s) 420, 457
BsrI ACTGG 3 cut(s) 517, 523, 1228
BssAI RCCGGY 2 cut(s) 420, 457
BssECI CCNNGG 3 cut(s) 172, 189, 365
BssMI GATC 4 cut(s) 64, 592, 800, 1318
BssNI GRCGYC 2 cut(s) 215, 1396
BssSI CACGAG 2 cut(s) 868, 1026
BssT1I CCWWGG 2 cut(s) 189, 365
Bst2BI CACGAG 2 cut(s) 868, 1026
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 1314
Bst6I CTCTTC 3 cut(s) 39, 41, 1261
BstACI GRCGYC 2 cut(s) 215, 1396
BstAPI GCANNNNNTGC 1 cut(s) 120
BstBI TTCGAA 1 cut(s) 1148
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 3 cut(s) 903, 1014, 1185
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 3 cut(s) 272, 482, 1450
BstH2I RGCGCY 2 cut(s) 218, 1399
BstHHI GCGC 2 cut(s) 217, 1398
BstKTI GATC 4 cut(s) 67, 595, 803, 1321
BstMAI GTCTC 3 cut(s) 43, 669, 1214
BstMBI GATC 4 cut(s) 64, 592, 800, 1318
BstMWI GCNNNNNNNGC 9 cut(s) 120, 129, 361, 761, 1028, 1089, 1169, 1178, 1292
BstNI CCWGG 1 cut(s) 199
BstNSI RCATGY 1 cut(s) 1079
BstSCI CCNGG 2 cut(s) 197, 698
BstSFI CTRYAG 3 cut(s) 707, 1053, 1176
BstV2I GAAGAC 5 cut(s) 21, 237, 423, 669, 1350
Bsu36I CCTNAGG 1 cut(s) 1185
BsuRI GGCC 7 cut(s) 159, 202, 355, 364, 1128, 1242, 1382
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 3 cut(s) 272, 482, 1450
BtsI GCAGTG 2 cut(s) 103, 1062
BtsIMutI CAGTG 3 cut(s) 103, 1062, 1281
Cac8I GCNNGC 1 cut(s) 310
CaiI CAGNNNCTG 1 cut(s) 1184
CciI TCATGA 3 cut(s) 82, 1207, 1321
CfoI GCGC 2 cut(s) 217, 1398
Cfr10I RCCGGY 2 cut(s) 420, 457
Cfr13I GGNCC 3 cut(s) 353, 362, 1380
Csp6I GTAC 7 cut(s) 507, 533, 605, 843, 957, 1011, 1041
CviQI GTAC 7 cut(s) 507, 533, 605, 843, 957, 1011, 1041
DdeI CTNAG 3 cut(s) 903, 1014, 1185
DinI GGCGCC 2 cut(s) 216, 1397
DpnI GATC 4 cut(s) 66, 594, 802, 1320
DpnII GATC 4 cut(s) 64, 592, 800, 1318
EaeI YGGCCR 2 cut(s) 157, 1126
Eam1104I CTCTTC 3 cut(s) 39, 41, 1261
EarI CTCTTC 3 cut(s) 39, 41, 1261
EciI GGCGGA 1 cut(s) 192
Eco130I CCWWGG 2 cut(s) 189, 365
Eco147I AGGCCT 1 cut(s) 202
Eco32I GATATC 1 cut(s) 334
Eco57I CTGAAG 3 cut(s) 249, 1371, 1410
Eco81I CCTNAGG 1 cut(s) 1185
EcoRII CCWGG 1 cut(s) 197
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 2 cut(s) 189, 365
EgeI GGCGCC 2 cut(s) 216, 1397
EheI GGCGCC 2 cut(s) 216, 1397
ErhI CCWWGG 2 cut(s) 189, 365
FalI AAGNNNNNCTT 4 cut(s) 408, 440, 550, 582
FaqI GGGAC 1 cut(s) 1412
FbaI TGATCA 3 cut(s) 64, 592, 1318
FblI GTMKAC 1 cut(s) 1230
FokI GGATG 2 cut(s) 259, 469
FspBI CTAG 4 cut(s) 264, 807, 1038, 1263
GlaI GCGC 2 cut(s) 216, 1397
GsaI CCCAGC 1 cut(s) 755
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 2 cut(s) 218, 1399
HaeIII GGCC 7 cut(s) 159, 202, 355, 364, 1128, 1242, 1382
HapII CCGG 5 cut(s) 212, 218, 421, 458, 700
HhaI GCGC 2 cut(s) 217, 1398
Hin1I GRCGYC 2 cut(s) 215, 1396
Hin6I GCGC 2 cut(s) 215, 1396
HinP1I GCGC 2 cut(s) 215, 1396
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HindIII AAGCTT 2 cut(s) 130, 310
HinfI GANTC 8 cut(s) 712, 734, 830, 887, 944, 998, 1138, 1439
HpaII CCGG 5 cut(s) 212, 218, 421, 458, 700
HphI GGTGA 7 cut(s) 602, 671, 839, 896, 953, 1007, 1229
Hpy166II GTNNAC 2 cut(s) 301, 1231
Hpy188I TCNGA 6 cut(s) 229, 277, 345, 1193, 1318, 1444
Hpy188III TCNNGA 4 cut(s) 83, 1208, 1263, 1322
Hpy8I GTNNAC 2 cut(s) 301, 1231
HpyAV CCTTC 7 cut(s) 80, 368, 442, 489, 631, 757, 1385
HpyCH4III ACNGT 1 cut(s) 1314
HpyCH4IV ACGT 2 cut(s) 303, 1100
HpyF10VI GCNNNNNNNGC 9 cut(s) 120, 129, 361, 761, 1028, 1089, 1169, 1178, 1292
HpyF3I CTNAG 3 cut(s) 903, 1014, 1185
HpySE526I ACGT 2 cut(s) 303, 1100
Hsp92I GRCGYC 2 cut(s) 215, 1396
HspAI GCGC 2 cut(s) 215, 1396
KasI GGCGCC 2 cut(s) 214, 1395
KpnI GGTACC 2 cut(s) 846, 960
Ksp22I TGATCA 3 cut(s) 64, 592, 1318
Kzo9I GATC 4 cut(s) 64, 592, 800, 1318
LmnI GCTCC 4 cut(s) 1036, 1177, 1291, 1448
LweI GCATC 1 cut(s) 146
MaeI CTAG 4 cut(s) 264, 807, 1038, 1263
MaeII ACGT 2 cut(s) 303, 1100
MalI GATC 4 cut(s) 66, 594, 802, 1320
MboI GATC 4 cut(s) 64, 592, 800, 1318
MhlI GDGCHC 2 cut(s) 1033, 1312
MlsI TGGCCA 1 cut(s) 1128
MluCI AATT 6 cut(s) 322, 339, 498, 784, 1086, 1144
MluNI TGGCCA 1 cut(s) 1128
Mly113I GGCGCC 2 cut(s) 215, 1396
MlyI GAGTC 1 cut(s) 743
MmeI TCCRAC 1 cut(s) 365
Mox20I TGGCCA 1 cut(s) 1128
MroXI GAANNNNTTC 3 cut(s) 131, 520, 565
MscI TGGCCA 1 cut(s) 1128
MseI TTAA 2 cut(s) 1104, 1456
MslI CAYNNNNRTG 3 cut(s) 1212, 1248, 1326
Msp20I TGGCCA 1 cut(s) 1128
MspA1I CMGCKG 1 cut(s) 780
MspI CCGG 5 cut(s) 212, 218, 421, 458, 700
MspR9I CCNGG 2 cut(s) 199, 700
MvaI CCWGG 1 cut(s) 199
MwoI GCNNNNNNNGC 9 cut(s) 120, 129, 361, 761, 1028, 1089, 1169, 1178, 1292
NarI GGCGCC 2 cut(s) 215, 1396
NciI CCSGG 1 cut(s) 700
NdeII GATC 4 cut(s) 64, 592, 800, 1318
NlaIV GGNNCC 7 cut(s) 216, 222, 462, 844, 958, 1381, 1397
NspI RCATGY 1 cut(s) 1079
NspV TTCGAA 1 cut(s) 1148
OliI CACNNNNGTG 1 cut(s) 1248
PagI TCATGA 3 cut(s) 82, 1207, 1321
PceI AGGCCT 1 cut(s) 202
PcsI WCGNNNNNNNCGW 1 cut(s) 809
PdmI GAANNNNTTC 3 cut(s) 131, 520, 565
PfeI GAWTC 7 cut(s) 712, 830, 887, 944, 998, 1138, 1439
PleI GAGTC 1 cut(s) 742
PluTI GGCGCC 2 cut(s) 218, 1399
PpsI GAGTC 1 cut(s) 742
Psp6I CCWGG 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 751
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 7 cut(s) 216, 222, 462, 844, 958, 1381, 1397
PspPI GGNCC 3 cut(s) 353, 362, 1380
PstI CTGCAG 2 cut(s) 711, 1057
PstNI CAGNNNCTG 1 cut(s) 1184
PvuII CAGCTG 1 cut(s) 780
RsaI GTAC 7 cut(s) 508, 534, 606, 844, 958, 1012, 1042
RsaNI GTAC 7 cut(s) 507, 533, 605, 843, 957, 1011, 1041
RseI CAYNNNNRTG 3 cut(s) 1212, 1248, 1326
SaqAI TTAA 2 cut(s) 1104, 1456
Sau3AI GATC 4 cut(s) 64, 592, 800, 1318
Sau96I GGNCC 3 cut(s) 353, 362, 1380
ScaI AGTACT 1 cut(s) 1042
SchI GAGTC 1 cut(s) 743
ScrFI CCNGG 2 cut(s) 199, 700
SduI GDGCHC 2 cut(s) 1033, 1312
SfaNI GCATC 1 cut(s) 146
SfcI CTRYAG 3 cut(s) 707, 1053, 1176
SfiI GGCCNNNNNGGCC 1 cut(s) 361
SfoI GGCGCC 2 cut(s) 216, 1397
SfuI TTCGAA 1 cut(s) 1148
SmiMI CAYNNNNRTG 3 cut(s) 1212, 1248, 1326
SmlI CTYRAG 2 cut(s) 143, 1236
SmoI CTYRAG 2 cut(s) 143, 1236
SpeI ACTAGT 1 cut(s) 1037
Sse9I AATT 6 cut(s) 322, 339, 498, 784, 1086, 1144
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 1 cut(s) 177
SspDI GGCGCC 2 cut(s) 214, 1395
SspI AATATT 1 cut(s) 628
SspMI CTAG 4 cut(s) 264, 807, 1038, 1263
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 197, 698
StyI CCWWGG 2 cut(s) 189, 365
TaaI ACNGT 1 cut(s) 1314
TaiI ACGT 2 cut(s) 306, 1103
TaqI TCGA 2 cut(s) 336, 1148
TasI AATT 6 cut(s) 322, 339, 498, 784, 1086, 1144
TatI WGTACW 1 cut(s) 1040
TfiI GAWTC 7 cut(s) 712, 830, 887, 944, 998, 1138, 1439
Tru1I TTAA 2 cut(s) 1104, 1456
Tru9I TTAA 2 cut(s) 1104, 1456
TscAI CASTG 3 cut(s) 103, 1062, 1281
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 3 cut(s) 103, 1062, 1281
XapI RAATTY 3 cut(s) 322, 339, 1086
XbaI TCTAGA 1 cut(s) 1262
XceI RCATGY 1 cut(s) 1079
XcmI CCANNNNNNNNNTGG 2 cut(s) 676, 1250
XmiI GTMKAC 1 cut(s) 1230
XmnI GAANNNNTTC 3 cut(s) 131, 520, 565
XspI CTAG 4 cut(s) 264, 807, 1038, 1263
ZrmI AGTACT 1 cut(s) 1042
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.