Rorug05G0391800

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
53475767 .. 53477896
2130 bp
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UTR
Exon/CDS
Intron
Rorug05G0391800.1

Sequence Viewer

Length: 468 bp
ATGTTTGCAAAAGGTTCAGCAATTGGACAAGATGCCGTGAACAAGGCTAAAGCATTTGATGAAAAGCATCGGTTGAGAGAAAGTGCATCTGAGAAAGTAACTTCCTTTGACAAGAGAGTGGGGCTCACAGAGAAATTGACAGTAGGCCTTTTAGTGGTTAACGAGAAAGTGAAGTCTGTTGATCAAAGACTTCAGGTCTCAGATAAAACAATGGCAGCAATATTTGCAGCAGAGAGAAAATTAAATGATACTGGATCAGCTGTCAAAACAAGCAGGTATGTGACTGTGGGAGCAGCTTGGTTCAATGGTGCTTTTAGCAAGGTGGCAAAGGCAGGGCAGGCTGCAGGTACAAAAACCAGAGAAAAGTTCCATATGGCTGTGTCAAACTTGACTGCAAAGGTAGAGCATATTATTAGAGAAGAGAATATGATGGCAGCTCAGGAGATCATCGAGCTATATATTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

16.98

Weight (kDa)

9.57

Isoelectric Point (pI)

22.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 264, 335
AclWI GGATC 1 cut(s) 262
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 1 cut(s) 349
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 1 cut(s) 304
AhdI GACNNNNNGTC 1 cut(s) 194
AluBI AGCT 4 cut(s) 260, 296, 437, 454
AluI AGCT 4 cut(s) 260, 296, 437, 454
Alw26I GTCTC 1 cut(s) 202
AlwI GGATC 1 cut(s) 262
AoxI GGCC 1 cut(s) 145
ApeKI GCWGC 5 cut(s) 215, 227, 293, 341, 434
BanII GRGCYC 1 cut(s) 126
BbvI GCAGC 5 cut(s) 227, 239, 305, 328, 446
BccI CCATC 1 cut(s) 424
BceAI ACGGC 1 cut(s) 20
BclI TGATCA 1 cut(s) 181
BcoDI GTCTC 1 cut(s) 202
BfmI CTRYAG 1 cut(s) 342
BfuAI ACCTGC 2 cut(s) 264, 335
BisI GCNGC 5 cut(s) 216, 228, 294, 342, 435
BlsI GCNGC 5 cut(s) 217, 229, 295, 343, 436
BmeRI GACNNNNNGTC 1 cut(s) 194
BmsI GCATC 3 cut(s) 22, 76, 95
BplI GAGNNNNNCTC 2 cut(s) 108, 140
Bpu10I CCTNAGC 1 cut(s) 438
BsaI GGTCTC 1 cut(s) 202
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse1I ACTGG 1 cut(s) 256
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 3 cut(s) 81, 213, 452
BseNI ACTGG 1 cut(s) 256
BseXI GCAGC 5 cut(s) 227, 239, 305, 328, 446
BshFI GGCC 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 202
BsnI GGCC 1 cut(s) 147
Bso31I GGTCTC 1 cut(s) 202
Bsp1286I GDGCHC 1 cut(s) 126
Bsp143I GATC 3 cut(s) 181, 254, 444
BspANI GGCC 1 cut(s) 147
BspCNI CTCAG 3 cut(s) 82, 212, 451
BspMAI CTGCAG 1 cut(s) 346
BspMI ACCTGC 2 cut(s) 264, 335
BspPI GGATC 1 cut(s) 262
BspTNI GGTCTC 1 cut(s) 202
BsrI ACTGG 1 cut(s) 256
BssMI GATC 3 cut(s) 181, 254, 444
Bst4CI ACNGT 2 cut(s) 142, 286
Bst6I CTCTTC 1 cut(s) 414
BstAPI GCANNNNNTGC 1 cut(s) 224
BstC8I GCNNGC 1 cut(s) 339
BstDEI CTNAG 3 cut(s) 90, 199, 438
BstKTI GATC 3 cut(s) 184, 257, 447
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 3 cut(s) 181, 254, 444
BstMWI GCNNNNNNNGC 2 cut(s) 224, 338
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 5 cut(s) 227, 239, 305, 328, 446
BsuRI GGCC 1 cut(s) 147
BveI ACCTGC 2 cut(s) 264, 335
Cac8I GCNNGC 1 cut(s) 339
Csp6I GTAC 1 cut(s) 348
CviJI RGCY 9 cut(s) 47, 124, 147, 260, 296, 341, 377, 437, 454
CviKI_1 RGCY 9 cut(s) 47, 124, 147, 260, 296, 341, 377, 437, 454
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 3 cut(s) 90, 199, 438
DpnI GATC 3 cut(s) 183, 256, 446
DpnII GATC 3 cut(s) 181, 254, 444
DriI GACNNNNNGTC 1 cut(s) 194
Eam1104I CTCTTC 1 cut(s) 414
Eam1105I GACNNNNNGTC 1 cut(s) 194
EarI CTCTTC 1 cut(s) 414
Eco147I AGGCCT 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 202
Eco57I CTGAAG 1 cut(s) 176
EcoT38I GRGCYC 1 cut(s) 126
FaiI YATR 7 cut(s) 279, 372, 374, 408, 428, 457, 459
FauNDI CATATG 1 cut(s) 372
FbaI TGATCA 1 cut(s) 181
Fnu4HI GCNGC 5 cut(s) 216, 228, 294, 342, 435
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 5 cut(s) 216, 228, 294, 342, 435
GluI GCNGC 5 cut(s) 216, 228, 294, 342, 435
HaeIII GGCC 1 cut(s) 147
HincII GTYRAC 1 cut(s) 160
HindII GTYRAC 1 cut(s) 160
HpaI GTTAAC 1 cut(s) 160
Hpy166II GTNNAC 2 cut(s) 40, 160
Hpy188I TCNGA 2 cut(s) 91, 202
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 2 cut(s) 40, 160
HpyCH4III ACNGT 2 cut(s) 142, 286
HpyCH4V TGCA 5 cut(s) 8, 86, 227, 344, 395
HpyF10VI GCNNNNNNNGC 2 cut(s) 224, 338
HpyF3I CTNAG 3 cut(s) 90, 199, 438
Ksp22I TGATCA 1 cut(s) 181
KspAI GTTAAC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 181, 254, 444
LmnI GCTCC 1 cut(s) 290
LpnPI CCDG 8 cut(s) 179, 237, 259, 318, 323, 330, 370, 425
Lsp1109I GCAGC 5 cut(s) 227, 239, 305, 328, 446
LweI GCATC 3 cut(s) 22, 76, 95
MaeIII GTNAC 2 cut(s) 97, 280
MalI GATC 3 cut(s) 183, 256, 446
MboI GATC 3 cut(s) 181, 254, 444
MboII GAAGA 1 cut(s) 431
MfeI CAATTG 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 3 cut(s) 21, 134, 239
MseI TTAA 2 cut(s) 159, 242
MspA1I CMGCKG 1 cut(s) 260
MunI CAATTG 1 cut(s) 21
MwoI GCNNNNNNNGC 2 cut(s) 224, 338
NdeI CATATG 1 cut(s) 372
NdeII GATC 3 cut(s) 181, 254, 444
NmuCI GTSAC 1 cut(s) 280
PceI AGGCCT 1 cut(s) 147
PkrI GCNGC 5 cut(s) 217, 229, 295, 343, 436
PstI CTGCAG 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 260
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SaqAI TTAA 2 cut(s) 159, 242
SatI GCNGC 5 cut(s) 216, 228, 294, 342, 435
Sau3AI GATC 3 cut(s) 181, 254, 444
SduI GDGCHC 1 cut(s) 126
SfaNI GCATC 3 cut(s) 22, 76, 95
SfcI CTRYAG 1 cut(s) 342
Sse9I AATT 3 cut(s) 21, 134, 239
SseBI AGGCCT 1 cut(s) 147
SspI AATATT 1 cut(s) 222
StuI AGGCCT 1 cut(s) 147
TaaI ACNGT 2 cut(s) 142, 286
TaqI TCGA 1 cut(s) 450
TasI AATT 3 cut(s) 21, 134, 239
Tru1I TTAA 2 cut(s) 159, 242
Tru9I TTAA 2 cut(s) 159, 242
TseFI GTSAC 1 cut(s) 280
TseI GCWGC 5 cut(s) 215, 227, 293, 341, 434
Tsp45I GTSAC 1 cut(s) 280
TspDTI ATGAA 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.