BEST Arabidopsis thaliana protein match is
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G07330 AT1G07330 AT2G29620 AT2G29620 AT2G29620 AT2G29620 AT2G29620 AT2G29620 AT5G58880 |
| fragaria_vesca | FvH4_3g38180 |
| malus_domestica | MD03G1075800.v1.1 MD11G1080500.v1.1 |
| prunus_persica | Prupe.6G060900_v2.0.a1 |
| pyrus_communis | pycom03g06030 |
| rosa_chinensis | RchiOBHm_Chr5g0068611 |
| rosa_laevigata | RLG00000035984 |
| rosa_roxburghii | Rroxscaffold_1G00012270 |
| rosa_rugosa | Rorug05G0391800 Rorug05G0391900 |
| rosa_samantha | Rh5AG449500 Rh5BG467700 Rh5CG489500 Rh5DG481100 |
| rosa_wichuraiana | Rw5G041970 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 1696, 4757 |
| Acc36I | ACCTGC | 3 cut(s) | 1696, 2734, 4757 |
| AccI | GTMKAC | 2 cut(s) | 349, 1436 |
| AccIII | TCCGGA | 1 cut(s) | 2629 |
| AciI | CCGC | 3 cut(s) | 543, 1580, 1736 |
| AclWI | GGATC | 8 cut(s) | 292, 738, 1011, 2197, 2417, 2564, 4522, 5170 |
| AcsI | RAATTY | 8 cut(s) | 195, 637, 1031, 1756, 1865, 2401, 2541, 2596 |
| AfaI | GTAC | 4 cut(s) | 1685, 2000, 2527, 2868 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 1910, 2324, 5260 |
| AflII | CTTAAG | 1 cut(s) | 1007 |
| AflIII | ACRYGT | 4 cut(s) | 1465, 1573, 1995, 2460 |
| AhlI | ACTAGT | 2 cut(s) | 25, 1439 |
| AjiI | CACGTC | 1 cut(s) | 1574 |
| AjnI | CCWGG | 3 cut(s) | 925, 1112, 2890 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 3187, 3219, 3631, 3663, 4519, 4551 |
| Alw21I | GWGCWC | 2 cut(s) | 326, 4798 |
| Alw26I | GTCTC | 6 cut(s) | 309, 757, 1373, 2207, 2689, 3025 |
| Alw44I | GTGCAC | 1 cut(s) | 4794 |
| AlwI | GGATC | 8 cut(s) | 292, 738, 1011, 2197, 2417, 2564, 4522, 5170 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 3341, 4673 |
| Ama87I | CYCGRG | 1 cut(s) | 312 |
| Aor13HI | TCCGGA | 1 cut(s) | 2629 |
| AoxI | GGCC | 2 cut(s) | 826, 4845 |
| ApaLI | GTGCAC | 1 cut(s) | 4794 |
| ApoI | RAATTY | 8 cut(s) | 195, 637, 1031, 1756, 1865, 2401, 2541, 2596 |
| AseI | ATTAAT | 2 cut(s) | 3320, 4652 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 67, 552, 2047, 5275 |
| AspLEI | GCGC | 2 cut(s) | 107, 673 |
| AspS9I | GGNCC | 3 cut(s) | 537, 1172, 1664 |
| AsuHPI | GGTGA | 6 cut(s) | 1036, 1722, 2121, 2236, 2303, 2679 |
| AsuII | TTCGAA | 1 cut(s) | 2405 |
| AsuNHI | GCTAGC | 1 cut(s) | 2824 |
| AvaI | CYCGRG | 1 cut(s) | 312 |
| AvaII | GGWCC | 3 cut(s) | 537, 1172, 1664 |
| BaeGI | GKGCMC | 1 cut(s) | 4798 |
| BanII | GRGCYC | 1 cut(s) | 326 |
| BbsI | GAAGAC | 3 cut(s) | 1644, 3174, 4827 |
| Bbv12I | GWGCWC | 2 cut(s) | 326, 4798 |
| BccI | CCATC | 8 cut(s) | 674, 901, 1124, 1621, 1742, 1784, 2282, 5011 |
| BceAI | ACGGC | 2 cut(s) | 253, 928 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 5133, 5167 |
| BciT130I | CCWGG | 3 cut(s) | 927, 1114, 2892 |
| BciVI | GTATCC | 4 cut(s) | 835, 2758, 3319, 4651 |
| BclI | TGATCA | 3 cut(s) | 508, 712, 1414 |
| BcoDI | GTCTC | 6 cut(s) | 309, 757, 1373, 2207, 2689, 3025 |
| BcuI | ACTAGT | 2 cut(s) | 25, 1439 |
| BfoI | RGCGCY | 1 cut(s) | 108 |
| BfrI | CTTAAG | 1 cut(s) | 1007 |
| BfuAI | ACCTGC | 3 cut(s) | 1696, 2734, 4757 |
| BfuI | GTATCC | 4 cut(s) | 835, 2758, 3319, 4651 |
| BglII | AGATCT | 2 cut(s) | 1535, 4490 |
| Bme1390I | CCNGG | 3 cut(s) | 927, 1114, 2892 |
| Bme18I | GGWCC | 3 cut(s) | 537, 1172, 1664 |
| BmeT110I | CYCGRG | 1 cut(s) | 312 |
| BmgBI | CACGTC | 1 cut(s) | 1574 |
| BmgT120I | GGNCC | 3 cut(s) | 537, 1172, 1664 |
| BmrFI | CCNGG | 3 cut(s) | 927, 1114, 2892 |
| BmrI | ACTGGG | 1 cut(s) | 4923 |
| BmtI | GCTAGC | 1 cut(s) | 2828 |
| BmuI | ACTGGG | 1 cut(s) | 4923 |
| BpiI | GAAGAC | 3 cut(s) | 1644, 3174, 4827 |
| BpmI | CTGGAG | 7 cut(s) | 231, 312, 788, 1010, 2814, 2913, 3510 |
| Bpu14I | TTCGAA | 1 cut(s) | 2405 |
| BpuEI | CTTGAG | 3 cut(s) | 1129, 2592, 3066 |
| BsaAI | YACGTR | 1 cut(s) | 1683 |
| BsaBI | GATNNNNATC | 2 cut(s) | 591, 2194 |
| BsaJI | CCNNGG | 2 cut(s) | 1112, 1941 |
| BsaWI | WCCGGW | 1 cut(s) | 2629 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 1910, 2324, 5260 |
| Bse1I | ACTGG | 7 cut(s) | 66, 771, 993, 4831, 4894, 4918, 5272 |
| Bse3DI | GCAATG | 3 cut(s) | 377, 1489, 2574 |
| Bse8I | GATNNNNATC | 2 cut(s) | 591, 2194 |
| BseAI | TCCGGA | 1 cut(s) | 2629 |
| BseBI | CCWGG | 3 cut(s) | 927, 1114, 2892 |
| BseDI | CCNNGG | 2 cut(s) | 1112, 1941 |
| BseGI | GGATG | 7 cut(s) | 382, 617, 685, 1432, 1838, 2071, 2313 |
| BseJI | GATNNNNATC | 2 cut(s) | 591, 2194 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 1910, 2324, 5260 |
| BseMI | GCAATG | 3 cut(s) | 377, 1489, 2574 |
| BseMII | CTCAG | 7 cut(s) | 894, 2538, 2634, 3933, 4167, 4275, 5157 |
| BseNI | ACTGG | 7 cut(s) | 66, 771, 993, 4831, 4894, 4918, 5272 |
| BseRI | GAGGAG | 1 cut(s) | 1007 |
| BseSI | GKGCMC | 1 cut(s) | 4798 |
| BseYI | CCCAGC | 1 cut(s) | 952 |
| BsgI | GTGCAG | 3 cut(s) | 33, 716, 1467 |
| BshFI | GGCC | 2 cut(s) | 828, 4847 |
| BsiHKAI | GWGCWC | 2 cut(s) | 326, 4798 |
| BsiHKCI | CYCGRG | 1 cut(s) | 312 |
| BsiSI | CCGG | 2 cut(s) | 1001, 2630 |
| BslFI | GGGAC | 6 cut(s) | 697, 1185, 1584, 1808, 1886, 2341 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 1910, 2324, 5260 |
| BsmAI | GTCTC | 6 cut(s) | 309, 757, 1373, 2207, 2689, 3025 |
| BsmBI | CGTCTC | 1 cut(s) | 309 |
| BsmFI | GGGAC | 6 cut(s) | 697, 1185, 1584, 1808, 1886, 2341 |
| BsmI | GAATGC | 2 cut(s) | 1203, 2233 |
| BsnI | GGCC | 2 cut(s) | 828, 4847 |
| BsoBI | CYCGRG | 1 cut(s) | 312 |
| Bsp119I | TTCGAA | 1 cut(s) | 2405 |
| Bsp1286I | GDGCHC | 2 cut(s) | 326, 4798 |
| Bsp13I | TCCGGA | 1 cut(s) | 2629 |
| BspACI | CCGC | 3 cut(s) | 543, 1580, 1736 |
| BspANI | GGCC | 2 cut(s) | 828, 4847 |
| BspCNI | CTCAG | 7 cut(s) | 895, 2539, 2635, 3934, 4168, 4276, 5158 |
| BspEI | TCCGGA | 1 cut(s) | 2629 |
| BspHI | TCATGA | 1 cut(s) | 1177 |
| BspMI | ACCTGC | 3 cut(s) | 1696, 2734, 4757 |
| BspOI | GCTAGC | 1 cut(s) | 2828 |
| BspPI | GGATC | 8 cut(s) | 292, 738, 1011, 2197, 2417, 2564, 4522, 5170 |
| BspQI | GCTCTTC | 1 cut(s) | 784 |
| BspT104I | TTCGAA | 1 cut(s) | 2405 |
| BspTI | CTTAAG | 1 cut(s) | 1007 |
| BsrDI | GCAATG | 3 cut(s) | 377, 1489, 2574 |
| BsrI | ACTGG | 7 cut(s) | 66, 771, 993, 4831, 4894, 4918, 5272 |
| BssECI | CCNNGG | 2 cut(s) | 1112, 1941 |
| BssT1I | CCWWGG | 1 cut(s) | 1941 |
| Bst2UI | CCWGG | 3 cut(s) | 927, 1114, 2892 |
| Bst6I | CTCTTC | 5 cut(s) | 338, 784, 2294, 3023, 5004 |
| BstAFI | CTTAAG | 1 cut(s) | 1007 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4979 |
| BstBAI | YACGTR | 1 cut(s) | 1683 |
| BstBI | TTCGAA | 1 cut(s) | 2405 |
| BstC8I | GCNNGC | 2 cut(s) | 917, 2826 |
| BstF5I | GGATG | 7 cut(s) | 382, 617, 685, 1432, 1838, 2071, 2313 |
| BstH2I | RGCGCY | 1 cut(s) | 108 |
| BstHHI | GCGC | 2 cut(s) | 107, 673 |
| BstMAI | GTCTC | 6 cut(s) | 309, 757, 1373, 2207, 2689, 3025 |
| BstNI | CCWGG | 3 cut(s) | 927, 1114, 2892 |
| BstNSI | RCATGY | 8 cut(s) | 487, 919, 1060, 1469, 1556, 1879, 1999, 2464 |
| BstSCI | CCNGG | 3 cut(s) | 925, 1112, 2890 |
| BstSLI | GKGCMC | 1 cut(s) | 4798 |
| BstV2I | GAAGAC | 3 cut(s) | 1644, 3174, 4827 |
| BstX2I | RGATCY | 8 cut(s) | 284, 730, 1003, 1535, 2422, 2569, 4490, 5162 |
| BstYI | RGATCY | 8 cut(s) | 284, 730, 1003, 1535, 2422, 2569, 4490, 5162 |
| BsuI | GTATCC | 4 cut(s) | 835, 2758, 3319, 4651 |
| BsuRI | GGCC | 2 cut(s) | 828, 4847 |
| BtgZI | GCGATG | 1 cut(s) | 5010 |
| BtrI | CACGTC | 1 cut(s) | 1574 |
| BtsCI | GGATG | 7 cut(s) | 382, 617, 685, 1432, 1838, 2071, 2313 |
| BtsI | GCAGTG | 1 cut(s) | 704 |
| BtsIMutI | CAGTG | 8 cut(s) | 704, 986, 1309, 1764, 1778, 1894, 2640, 4824 |
| BveI | ACCTGC | 3 cut(s) | 1696, 2734, 4757 |
| Cac8I | GCNNGC | 2 cut(s) | 917, 2826 |
| CaiI | CAGNNNCTG | 2 cut(s) | 3341, 4673 |
| CciI | TCATGA | 1 cut(s) | 1177 |
| CfoI | GCGC | 2 cut(s) | 107, 673 |
| Cfr13I | GGNCC | 3 cut(s) | 537, 1172, 1664 |
| CseI | GACGC | 1 cut(s) | 2894 |
| Csp6I | GTAC | 4 cut(s) | 1684, 1999, 2526, 2867 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4711, 4746 |
| CviQI | GTAC | 4 cut(s) | 1684, 1999, 2526, 2867 |
| Eam1104I | CTCTTC | 5 cut(s) | 338, 784, 2294, 3023, 5004 |
| EarI | CTCTTC | 5 cut(s) | 338, 784, 2294, 3023, 5004 |
| EciI | GGCGGA | 1 cut(s) | 1569 |
| Ecl136II | GAGCTC | 1 cut(s) | 324 |
| Eco130I | CCWWGG | 1 cut(s) | 1941 |
| Eco147I | AGGCCT | 1 cut(s) | 828 |
| Eco24I | GRGCYC | 1 cut(s) | 326 |
| Eco32I | GATATC | 3 cut(s) | 601, 1387, 4951 |
| Eco47I | GGWCC | 3 cut(s) | 537, 1172, 1664 |
| Eco53kI | GAGCTC | 1 cut(s) | 324 |
| Eco88I | CYCGRG | 1 cut(s) | 312 |
| EcoICRI | GAGCTC | 1 cut(s) | 324 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1172, 1664 |
| EcoRI | GAATTC | 3 cut(s) | 1031, 1756, 2401 |
| EcoRII | CCWGG | 3 cut(s) | 925, 1112, 2890 |
| EcoRV | GATATC | 3 cut(s) | 601, 1387, 4951 |
| EcoT14I | CCWWGG | 1 cut(s) | 1941 |
| EcoT22I | ATGCAT | 3 cut(s) | 136, 1968, 5026 |
| EcoT38I | GRGCYC | 1 cut(s) | 326 |
| ErhI | CCWWGG | 1 cut(s) | 1941 |
| Esp3I | CGTCTC | 1 cut(s) | 309 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 2545, 2577 |
| FaqI | GGGAC | 6 cut(s) | 697, 1185, 1584, 1808, 1886, 2341 |
| FauNDI | CATATG | 1 cut(s) | 979 |
| FbaI | TGATCA | 3 cut(s) | 508, 712, 1414 |
| FblI | GTMKAC | 2 cut(s) | 349, 1436 |
| FokI | GGATG | 7 cut(s) | 389, 604, 692, 1439, 1825, 2078, 2320 |
| FriOI | GRGCYC | 1 cut(s) | 326 |
| GlaI | GCGC | 2 cut(s) | 106, 672 |
| GsaI | CCCAGC | 1 cut(s) | 956 |
| GsuI | CTGGAG | 7 cut(s) | 231, 312, 788, 1010, 2814, 2913, 3510 |
| HaeII | RGCGCY | 1 cut(s) | 108 |
| HaeIII | GGCC | 2 cut(s) | 828, 4847 |
| HapII | CCGG | 2 cut(s) | 1001, 2630 |
| HgaI | GACGC | 1 cut(s) | 2894 |
| HhaI | GCGC | 2 cut(s) | 107, 673 |
| Hin6I | GCGC | 2 cut(s) | 105, 671 |
| HinP1I | GCGC | 2 cut(s) | 105, 671 |
| HincII | GTYRAC | 1 cut(s) | 1300 |
| HindII | GTYRAC | 1 cut(s) | 1300 |
| HindIII | AAGCTT | 1 cut(s) | 4831 |
| HpaII | CCGG | 2 cut(s) | 1001, 2630 |
| HphI | GGTGA | 6 cut(s) | 1036, 1722, 2121, 2236, 2303, 2679 |
| HpyAV | CCTTC | 8 cut(s) | 56, 388, 638, 652, 948, 983, 2136, 3466 |
| HpyCH4IV | ACGT | 5 cut(s) | 1573, 1682, 1947, 2524, 3171 |
| HpySE526I | ACGT | 5 cut(s) | 1573, 1682, 1947, 2524, 3171 |
| HspAI | GCGC | 2 cut(s) | 105, 671 |
| Kpn2I | TCCGGA | 1 cut(s) | 2629 |
| Ksp22I | TGATCA | 3 cut(s) | 508, 712, 1414 |
| LguI | GCTCTTC | 1 cut(s) | 784 |
| MaeII | ACGT | 5 cut(s) | 1573, 1682, 1947, 2524, 3171 |
| MfeI | CAATTG | 1 cut(s) | 2472 |
| MflI | RGATCY | 8 cut(s) | 284, 730, 1003, 1535, 2422, 2569, 4490, 5162 |
| MhlI | GDGCHC | 2 cut(s) | 326, 4798 |
| MlyI | GAGTC | 4 cut(s) | 638, 3347, 3791, 4679 |
| MmeI | TCCRAC | 2 cut(s) | 1048, 2314 |
| Mph1103I | ATGCAT | 3 cut(s) | 136, 1968, 5026 |
| MroI | TCCGGA | 1 cut(s) | 2629 |
| MroXI | GAANNNNTTC | 4 cut(s) | 67, 552, 2047, 5275 |
| MseI | TTAA | 9 cut(s) | 564, 1008, 1593, 2465, 3320, 4652, 4709, 4835, 5121 |
| MslI | CAYNNNNRTG | 1 cut(s) | 557 |
| MspCI | CTTAAG | 1 cut(s) | 1007 |
| MspI | CCGG | 2 cut(s) | 1001, 2630 |
| MspR9I | CCNGG | 3 cut(s) | 927, 1114, 2892 |
| MunI | CAATTG | 1 cut(s) | 2472 |
| Mva1269I | GAATGC | 2 cut(s) | 1203, 2233 |
| MvaI | CCWGG | 3 cut(s) | 927, 1114, 2892 |
| NdeI | CATATG | 1 cut(s) | 979 |
| NheI | GCTAGC | 1 cut(s) | 2824 |
| NmuCI | GTSAC | 2 cut(s) | 1042, 1327 |
| NsiI | ATGCAT | 3 cut(s) | 136, 1968, 5026 |
| NspI | RCATGY | 8 cut(s) | 487, 919, 1060, 1469, 1556, 1879, 1999, 2464 |
| NspV | TTCGAA | 1 cut(s) | 2405 |
| PaeI | GCATGC | 1 cut(s) | 919 |
| PaeR7I | CTCGAG | 1 cut(s) | 312 |
| PagI | TCATGA | 1 cut(s) | 1177 |
| PaqCI | CACCTGC | 2 cut(s) | 1696, 4757 |
| PceI | AGGCCT | 1 cut(s) | 828 |
| PciI | ACATGT | 3 cut(s) | 1465, 1995, 2460 |
| PciSI | GCTCTTC | 1 cut(s) | 784 |
| PctI | GAATGC | 2 cut(s) | 1203, 2233 |
| PdmI | GAANNNNTTC | 4 cut(s) | 67, 552, 2047, 5275 |
| PfoI | TCCNGGA | 1 cut(s) | 2890 |
| PleI | GAGTC | 4 cut(s) | 637, 3346, 3790, 4678 |
| PpsI | GAGTC | 4 cut(s) | 637, 3346, 3790, 4678 |
| Ppu21I | YACGTR | 1 cut(s) | 1683 |
| PpuMI | RGGWCCY | 2 cut(s) | 1172, 1664 |
| PscI | ACATGT | 3 cut(s) | 1465, 1995, 2460 |
| PshBI | ATTAAT | 2 cut(s) | 3320, 4652 |
| Psp124BI | GAGCTC | 1 cut(s) | 326 |
| Psp5II | RGGWCCY | 2 cut(s) | 1172, 1664 |
| Psp6I | CCWGG | 3 cut(s) | 925, 1112, 2890 |
| PspFI | CCCAGC | 1 cut(s) | 952 |
| PspGI | CCWGG | 3 cut(s) | 925, 1112, 2890 |
| PspPI | GGNCC | 3 cut(s) | 537, 1172, 1664 |
| PspPPI | RGGWCCY | 2 cut(s) | 1172, 1664 |
| PstNI | CAGNNNCTG | 2 cut(s) | 3341, 4673 |
| PsuI | RGATCY | 8 cut(s) | 284, 730, 1003, 1535, 2422, 2569, 4490, 5162 |
| RsaI | GTAC | 4 cut(s) | 1685, 2000, 2527, 2868 |
| RsaNI | GTAC | 4 cut(s) | 1684, 1999, 2526, 2867 |
| RseI | CAYNNNNRTG | 1 cut(s) | 557 |
| SacI | GAGCTC | 1 cut(s) | 326 |
| SapI | GCTCTTC | 1 cut(s) | 784 |
| SaqAI | TTAA | 9 cut(s) | 564, 1008, 1593, 2465, 3320, 4652, 4709, 4835, 5121 |
| Sau96I | GGNCC | 3 cut(s) | 537, 1172, 1664 |
| SchI | GAGTC | 4 cut(s) | 638, 3347, 3791, 4679 |
| ScrFI | CCNGG | 3 cut(s) | 927, 1114, 2892 |
| SduI | GDGCHC | 2 cut(s) | 326, 4798 |
| Sfr274I | CTCGAG | 1 cut(s) | 312 |
| SfuI | TTCGAA | 1 cut(s) | 2405 |
| SinI | GGWCC | 3 cut(s) | 537, 1172, 1664 |
| SlaI | CTCGAG | 1 cut(s) | 312 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 557 |
| SmlI | CTYRAG | 5 cut(s) | 312, 1007, 1144, 2607, 3081 |
| SmoI | CTYRAG | 5 cut(s) | 312, 1007, 1144, 2607, 3081 |
| SpeI | ACTAGT | 2 cut(s) | 25, 1439 |
| SphI | GCATGC | 1 cut(s) | 919 |
| SseBI | AGGCCT | 1 cut(s) | 828 |
| SsiI | CCGC | 3 cut(s) | 543, 1580, 1736 |
| SstI | GAGCTC | 1 cut(s) | 326 |
| StuI | AGGCCT | 1 cut(s) | 828 |
| StyD4I | CCNGG | 3 cut(s) | 925, 1112, 2890 |
| StyI | CCWWGG | 1 cut(s) | 1941 |
| TaiI | ACGT | 5 cut(s) | 1576, 1685, 1950, 2527, 3174 |
| TaqI | TCGA | 7 cut(s) | 56, 313, 595, 1800, 2145, 2405, 3755 |
| TatI | WGTACW | 2 cut(s) | 1998, 2866 |
| Tru1I | TTAA | 9 cut(s) | 564, 1008, 1593, 2465, 3320, 4652, 4709, 4835, 5121 |
| Tru9I | TTAA | 9 cut(s) | 564, 1008, 1593, 2465, 3320, 4652, 4709, 4835, 5121 |
| TscAI | CASTG | 8 cut(s) | 704, 993, 1309, 1771, 1785, 1894, 2647, 4831 |
| TseFI | GTSAC | 2 cut(s) | 1042, 1327 |
| Tsp45I | GTSAC | 2 cut(s) | 1042, 1327 |
| TspGWI | ACGGA | 2 cut(s) | 719, 2714 |
| TspRI | CASTG | 8 cut(s) | 704, 993, 1309, 1771, 1785, 1894, 2647, 4831 |
| Vha464I | CTTAAG | 1 cut(s) | 1007 |
| VneI | GTGCAC | 1 cut(s) | 4794 |
| VpaK11BI | GGWCC | 3 cut(s) | 537, 1172, 1664 |
| VspI | ATTAAT | 2 cut(s) | 3320, 4652 |
| XapI | RAATTY | 8 cut(s) | 195, 637, 1031, 1756, 1865, 2401, 2541, 2596 |
| XbaI | TCTAGA | 2 cut(s) | 4078, 4420 |
| XceI | RCATGY | 8 cut(s) | 487, 919, 1060, 1469, 1556, 1879, 1999, 2464 |
| XhoI | CTCGAG | 1 cut(s) | 312 |
| XmiI | GTMKAC | 2 cut(s) | 349, 1436 |
| XmnI | GAANNNNTTC | 4 cut(s) | 67, 552, 2047, 5275 |
| Zsp2I | ATGCAT | 3 cut(s) | 136, 1968, 5026 |