Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003880

Physical Location & Seq

Genomic Coordinates Forward (+)

60277522 .. 60283379

Gene Structure 5858 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0433800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGGCGAGTGGTGTAGAAAGAGAGCAGGTAGTGAGGAACAAGCAGGTGATATTCAAAGACTATGTCACCGGCTTCCCCAAACAATCTAACATGCAATTGACCACTAGTACAACCAAACTGAAGCTCCCACAAGGTTCCACTGGTGTTCTGGTCAAGAACCTCTACTTGTCCTGCGATCCTTGGACTAGAGCCCATATGTCCAAGGCTAACTCTGATACTCCTTATATCAAAACCTTCACTCCTGGTTCGCCTATGACCGGATTTGGAGTGGCTAAAGTCTTGGAATCTGGGGATGCAAACTTTAAGCAAGGCGACTTGATTTGGGGAATCACTGGTTGGGAAGAATATAGTCTCATAAATGCAACAGAATCTCTGGTCAAGATTCACAACACTGATGTGCCGCTCTCTTACTATACCGGAATTCTTGGTATGCCTGGACTGACAGCTTATGTAGGTTTTTATGAGGTTTGCTCACCTAAGAAAGGAGAGACGGTCTTCATCTCAGCAGCATCTGGAGCAGTAGGTCAACTTGTTGGCCAATTTGCCAAACTCATGGGTTGTTACGTCGTTGGAAGTGCTGGAAGTAAAGAAAAGGTTGATTTGCTCAAGAACAAGTTTGGGTTTGACGAGGCTTTCAATTATAAAGAGGAACCTAACTTGGATGCAGCTTTAAAAAGGTACTTTCCTGAAGGTATTGATATTTACTTTGAAAATGTTGGGGGAAAGATGCTTGATGCAGTGCTACCAAACATGAAGTTCCGGGGGCGAATTGGAGTTTGTGGGATGATATCCCAATATAACCTTGAGAAGCCTGAAGGTGTACACAATCAAATGTTCCTTCTTACTAAAGAGGTCCGGATGCAAGGTTTTGTTGTTTTTAATTACTATCATCTTAGTCTCTTGAAAGTAAGGAATTTGGTAGAATCCTATGATTGTAAAGCTGTTTTATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CRAL_TRIO CRAL_TRIO_N

Protein Analysis

317

Amino Acids

35.2

Weight (kDa)

8.59

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	14 - 123	3.5e-23	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	173 - 294	1.4e-23	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003880)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55690 AT1G55690 AT1G55690 AT1G55690 AT1G55690
fragaria_vesca	FvH4_3g41690 FvH4_3g41690 FvH4_3g41690 FvH4_3g41690 FvH4_3g41690 FvH4_3g41690 FvH4_3g41690 FvH4_3g41690 FvH4_3g41690 FvH4_3g41690 FvH4_3g41690 FvH4_3g41690 FvH4_3g41690 FvH4_3g41690
malus_domestica	MD03G1041800.v1.1 MD11G1042600.v1.1
prunus_persica	Prupe.6G033800_v2.0.a1
pyrus_communis	pycom03g03240 pycom11g03670
rosa_chinensis	RchiOBHm_Chr5g0074781
rosa_laevigata	RLG00000036504
rosa_multiflora	Rmu_sc0000909.1_g000013
rosa_roxburghii	Rroxscaffold_1G00006810
rosa_rugosa	Rorug05G0433800
rosa_samantha	Rh5AG491600 Rh5BG512900 Rh5CG536600 Rh5DG525000
rosa_wichuraiana	Rw5G045530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	642
AarI	CACCTGC	1 cut(s)	34
Acc36I	ACCTGC	2 cut(s)	16, 34
AccBSI	CCGCTC	1 cut(s)	403
AccIII	TCCGGA	1 cut(s)	855
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	535
AcsI	RAATTY	2 cut(s)	420, 913
AcuI	CTGAAG	3 cut(s)	140, 708, 834
AfaI	GTAC	3 cut(s)	109, 680, 822
AfiI	CCNNNNNNNGG	2 cut(s)	257, 482
AgsI	TTSAA	4 cut(s)	55, 637, 710, 904
AhlI	ACTAGT	1 cut(s)	104
AjnI	CCWGG	2 cut(s)	241, 433
AjuI	GAANNNNNNNTTGG	2 cut(s)	319, 351
AleI	CACNNNNGTG	1 cut(s)	395
AluBI	AGCT	4 cut(s)	124, 446, 668, 941
AluI	AGCT	4 cut(s)	124, 446, 668, 941
Alw26I	GTCTC	3 cut(s)	356, 482, 902
AlwI	GGATC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	512
Aor13HI	TCCGGA	1 cut(s)	855
AoxI	GGCC	1 cut(s)	535
ApeKI	GCWGC	2 cut(s)	506, 665
ApoI	RAATTY	2 cut(s)	420, 913
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AspS9I	GGNCC	1 cut(s)	853
AsuC2I	CCSGG	1 cut(s)	761
AsuHPI	GGTGA	3 cut(s)	58, 58, 465
AvaII	GGWCC	1 cut(s)	853
BalI	TGGCCA	1 cut(s)	537
BanII	GRGCYC	1 cut(s)	193
BbsI	GAAGAC	1 cut(s)	487
BbvI	GCAGC	2 cut(s)	518, 677
BciT130I	CCWGG	2 cut(s)	243, 435
BcnI	CCSGG	1 cut(s)	761
BcoDI	GTCTC	3 cut(s)	356, 482, 902
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	2 cut(s)	105, 186
BfuAI	ACCTGC	2 cut(s)	16, 34
BisI	GCNGC	3 cut(s)	401, 507, 666
BlsI	GCNGC	3 cut(s)	402, 508, 667
Bme1390I	CCNGG	3 cut(s)	243, 435, 761
Bme18I	GGWCC	1 cut(s)	853
BmgT120I	GGNCC	1 cut(s)	853
BmiI	GGNNCC	2 cut(s)	136, 651
BmrFI	CCNGG	3 cut(s)	243, 435, 761
BmsI	GCATC	6 cut(s)	283, 518, 652, 717, 724, 849
BpiI	GAAGAC	1 cut(s)	487
BplI	GAGNNNNNCTC	2 cut(s)	455, 487
BpmI	CTGGAG	1 cut(s)	534
BpuEI	CTTGAG	2 cut(s)	590, 824
BpuMI	CCSGG	1 cut(s)	761
BsaJI	CCNNGG	3 cut(s)	179, 201, 760
BsaWI	WCCGGW	3 cut(s)	257, 416, 855
BsaXI	ACNNNNNCTCC	6 cut(s)	108, 138, 223, 253, 477, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	257, 482
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	2 cut(s)	145, 337
BseAI	TCCGGA	1 cut(s)	855
BseBI	CCWGG	2 cut(s)	243, 435
BseDI	CCNNGG	3 cut(s)	179, 201, 760
BseGI	GGATG	4 cut(s)	298, 667, 789, 864
BseLI	CCNNNNNNNGG	2 cut(s)	257, 482
BseMII	CTCAG	1 cut(s)	516
BseNI	ACTGG	2 cut(s)	145, 337
BseXI	GCAGC	2 cut(s)	518, 677
BshFI	GGCC	1 cut(s)	537
BsiSI	CCGG	5 cut(s)	69, 258, 417, 760, 856
BslI	CCNNNNNNNGG	2 cut(s)	257, 482
BsmAI	GTCTC	3 cut(s)	356, 482, 902
BsmBI	CGTCTC	1 cut(s)	482
BsnI	GGCC	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	193
Bsp13I	TCCGGA	1 cut(s)	855
Bsp1407I	TGTACA	1 cut(s)	820
Bsp143I	GATC	1 cut(s)	175
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	537
BspCNI	CTCAG	1 cut(s)	515
BspEI	TCCGGA	1 cut(s)	855
BspLI	GGNNCC	2 cut(s)	136, 651
BspMI	ACCTGC	2 cut(s)	16, 34
BspPI	GGATC	1 cut(s)	170
BsrBI	CCGCTC	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	68
BsrGI	TGTACA	1 cut(s)	820
BsrI	ACTGG	2 cut(s)	145, 337
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	3 cut(s)	179, 201, 760
BssMI	GATC	1 cut(s)	175
BssT1I	CCWWGG	2 cut(s)	179, 201
Bst2UI	CCWGG	2 cut(s)	243, 435
Bst4CI	ACNGT	1 cut(s)	493
BstAUI	TGTACA	1 cut(s)	820
BstDEI	CTNAG	3 cut(s)	477, 502, 893
BstENI	CCTNNNNNAGG	1 cut(s)	480
BstF5I	GGATG	4 cut(s)	298, 667, 789, 864
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	3 cut(s)	356, 482, 902
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	1 cut(s)	515
BstNI	CCWGG	2 cut(s)	243, 435
BstNSI	RCATGY	1 cut(s)	94
BstSCI	CCNGG	3 cut(s)	241, 433, 759
BstV1I	GCAGC	2 cut(s)	518, 677
BstV2I	GAAGAC	1 cut(s)	487
BstXI	CCANNNNNNTGG	1 cut(s)	553
BsuRI	GGCC	1 cut(s)	537
BtsCI	GGATG	4 cut(s)	298, 667, 789, 864
BtsI	GCAGTG	1 cut(s)	744
BtsIMutI	CAGTG	4 cut(s)	138, 330, 390, 744
BveI	ACCTGC	2 cut(s)	16, 34
CaiI	CAGNNNCTG	1 cut(s)	512
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	1 cut(s)	853
Csp6I	GTAC	3 cut(s)	108, 679, 821
CviAII	CATG	3 cut(s)	91, 553, 751
CviQI	GTAC	3 cut(s)	108, 679, 821
DdeI	CTNAG	3 cut(s)	477, 502, 893
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
DraI	TTTAAA	1 cut(s)	672
EaeI	YGGCCR	1 cut(s)	535
Eco130I	CCWWGG	2 cut(s)	179, 201
Eco24I	GRGCYC	1 cut(s)	193
Eco32I	GATATC	1 cut(s)	789
Eco47I	GGWCC	1 cut(s)	853
Eco57I	CTGAAG	3 cut(s)	140, 708, 834
EcoNI	CCTNNNNNAGG	1 cut(s)	480
EcoRI	GAATTC	1 cut(s)	420
EcoRII	CCWGG	2 cut(s)	241, 433
EcoRV	GATATC	1 cut(s)	789
EcoT14I	CCWWGG	2 cut(s)	179, 201
EcoT38I	GRGCYC	1 cut(s)	193
ErhI	CCWWGG	2 cut(s)	179, 201
Esp3I	CGTCTC	1 cut(s)	482
FaeI	CATG	3 cut(s)	94, 556, 754
FatI	CATG	3 cut(s)	90, 552, 750
FauNDI	CATATG	1 cut(s)	195
Fnu4HI	GCNGC	3 cut(s)	401, 507, 666
FokI	GGATG	4 cut(s)	305, 674, 796, 871
FriOI	GRGCYC	1 cut(s)	193
Fsp4HI	GCNGC	3 cut(s)	401, 507, 666
FspBI	CTAG	2 cut(s)	105, 186
GluI	GCNGC	3 cut(s)	401, 507, 666
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	1 cut(s)	537
HapII	CCGG	5 cut(s)	69, 258, 417, 760, 856
Hin1II	CATG	3 cut(s)	94, 556, 754
HincII	GTYRAC	1 cut(s)	527
HindII	GTYRAC	1 cut(s)	527
HinfI	GANTC	5 cut(s)	284, 327, 368, 382, 923
HpaII	CCGG	5 cut(s)	69, 258, 417, 760, 856
HphI	GGTGA	3 cut(s)	58, 58, 465
Hpy166II	GTNNAC	3 cut(s)	527, 821, 823
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	7 cut(s)	154, 379, 513, 607, 686, 856, 901
Hpy8I	GTNNAC	3 cut(s)	527, 821, 823
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	4 cut(s)	244, 683, 809, 848
HpyCH4III	ACNGT	1 cut(s)	493
HpyCH4IV	ACGT	1 cut(s)	564
HpyCH4V	TGCA	6 cut(s)	94, 296, 362, 665, 737, 862
HpyF10VI	GCNNNNNNNGC	1 cut(s)	515
HpyF3I	CTNAG	3 cut(s)	477, 502, 893
HpySE526I	ACGT	1 cut(s)	564
Hsp92II	CATG	3 cut(s)	94, 556, 754
Kpn2I	TCCGGA	1 cut(s)	855
Kzo9I	GATC	1 cut(s)	175
LmnI	GCTCC	2 cut(s)	129, 515
Lsp1109I	GCAGC	2 cut(s)	518, 677
LweI	GCATC	6 cut(s)	283, 518, 652, 717, 724, 849
MaeI	CTAG	2 cut(s)	105, 186
MaeII	ACGT	1 cut(s)	564
MaeIII	GTNAC	2 cut(s)	64, 560
MalI	GATC	1 cut(s)	177
MbiI	CCGCTC	1 cut(s)	403
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	353, 487
MfeI	CAATTG	1 cut(s)	95
MhlI	GDGCHC	1 cut(s)	193
MlsI	TGGCCA	1 cut(s)	537
MluCI	AATT	7 cut(s)	95, 420, 539, 637, 768, 880, 913
MluNI	TGGCCA	1 cut(s)	537
MmeI	TCCRAC	1 cut(s)	550
MnlI	CCTC	6 cut(s)	27, 170, 457, 622, 640, 844
Mox20I	TGGCCA	1 cut(s)	537
MroI	TCCGGA	1 cut(s)	855
MscI	TGGCCA	1 cut(s)	537
MseI	TTAA	3 cut(s)	303, 671, 879
MslI	CAYNNNNRTG	1 cut(s)	395
Msp20I	TGGCCA	1 cut(s)	537
MspI	CCGG	5 cut(s)	69, 258, 417, 760, 856
MspR9I	CCNGG	3 cut(s)	243, 435, 761
MunI	CAATTG	1 cut(s)	95
MvaI	CCWGG	2 cut(s)	243, 435
MwoI	GCNNNNNNNGC	1 cut(s)	515
NciI	CCSGG	1 cut(s)	761
NdeI	CATATG	1 cut(s)	195
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	3 cut(s)	94, 556, 754
NlaIV	GGNNCC	2 cut(s)	136, 651
NmuCI	GTSAC	1 cut(s)	64
NspI	RCATGY	1 cut(s)	94
OliI	CACNNNNGTG	1 cut(s)	395
PaqCI	CACCTGC	1 cut(s)	34
PfeI	GAWTC	5 cut(s)	284, 327, 368, 382, 923
PflFI	GACNNNGTC	1 cut(s)	62
PkrI	GCNGC	3 cut(s)	402, 508, 667
PsiI	TTATAA	1 cut(s)	642
Psp6I	CCWGG	2 cut(s)	241, 433
PspGI	CCWGG	2 cut(s)	241, 433
PspN4I	GGNNCC	2 cut(s)	136, 651
PspPI	GGNCC	1 cut(s)	853
PstNI	CAGNNNCTG	1 cut(s)	512
PsyI	GACNNNGTC	1 cut(s)	62
RsaI	GTAC	3 cut(s)	109, 680, 822
RsaNI	GTAC	3 cut(s)	108, 679, 821
RseI	CAYNNNNRTG	1 cut(s)	395
SaqAI	TTAA	3 cut(s)	303, 671, 879
SatI	GCNGC	3 cut(s)	401, 507, 666
Sau3AI	GATC	1 cut(s)	175
Sau96I	GGNCC	1 cut(s)	853
ScrFI	CCNGG	3 cut(s)	243, 435, 761
SduI	GDGCHC	1 cut(s)	193
SfaNI	GCATC	6 cut(s)	283, 518, 652, 717, 724, 849
SinI	GGWCC	1 cut(s)	853
SmiMI	CAYNNNNRTG	1 cut(s)	395
SmlI	CTYRAG	2 cut(s)	605, 803
SmoI	CTYRAG	2 cut(s)	605, 803
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	7 cut(s)	95, 420, 539, 637, 768, 880, 913
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	2 cut(s)	105, 186
StyD4I	CCNGG	3 cut(s)	241, 433, 759
StyI	CCWWGG	2 cut(s)	179, 201
TaaI	ACNGT	1 cut(s)	493
TaiI	ACGT	1 cut(s)	567
TasI	AATT	7 cut(s)	95, 420, 539, 637, 768, 880, 913
TatI	WGTACW	2 cut(s)	107, 820
TauI	GCSGC	1 cut(s)	403
TfiI	GAWTC	5 cut(s)	284, 327, 368, 382, 923
Tru1I	TTAA	3 cut(s)	303, 671, 879
Tru9I	TTAA	3 cut(s)	303, 671, 879
TscAI	CASTG	4 cut(s)	145, 337, 397, 744
TseFI	GTSAC	1 cut(s)	64
TseI	GCWGC	2 cut(s)	506, 665
Tsp45I	GTSAC	1 cut(s)	64
TspDTI	ATGAA	2 cut(s)	487, 767
TspRI	CASTG	4 cut(s)	145, 337, 397, 744
Tth111I	GACNNNGTC	1 cut(s)	62
VpaK11BI	GGWCC	1 cut(s)	853
XagI	CCTNNNNNAGG	1 cut(s)	480
XapI	RAATTY	2 cut(s)	420, 913
XceI	RCATGY	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	145
XspI	CTAG	2 cut(s)	105, 186

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.