Rh5BG512900

Phosphatidylinositol phosphatidylcholine transfer protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0003880
Physical Location & Seq
Reverse (-)
81378497 .. 81383821
5325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG512900.1

Sequence Viewer

Length: 1473 bp
ATGCTTAAATGGAGAAAAGAATTCGGGACAGACACCATTTTGGAGGATTTTGAATTTGGAGAGCTCGATGAAGTATTGCAATATTACCCTCAAGGGTACCATGGTGTTGATAAAGAAGGGAGGCCTGTTTACATAGAGAGACTGGGAAGAGCCCATCCAAGTAGGCTTATGCAAATAACCAGCATAGAGCGATACCTAAAGTACCATGTCCAAGAATTTGAGAGGGCTTTACAGGAAAAATTCCCTGCTTGTTCAATTGCTGCAAAGAGACAGATATGTTCTACAACAACTATACTGGATGTGCAAGGCTTGGGCATGAAAAATTTCACGCGTACTGCTGCAAATCTCCTGGCTTCCATGACAAAGATAGACACCAATTACTATCCTGAGACATTACACCGGATGTACATTGTGAATGCTGGTCCAGGCTTTAAGAAGATGCTTTGGCCGGCCGCACAGAAATTTCTTGATGTAAAGACGATTGCTAAAATACAGGTGCTGGAACCCAAATCCTTATGTAAATTACTGGAGGTGATTGATTCAAGTCAGTTGCCAGACTTCCTGGGTGGATCATGTACATGCTCCGCCGAAGGAGGCTGTCTCAAGTCTAGTAAAGGTCCATGGAATGATATCGAGATAATGAAGCTTCTGCATAATGCTGAAGCAACATTTGTGAGGGAAGTAACCAGGGTGTCGAACAACCAGCAGATATTTGACTCCTATGTTCAGATACGGCCACTGAAGGCATCAATCGCCAAATCAGGGTCAGATATTGACGATCCTTGTTCATCACTAGGACGAAGGACTTCTACACTTCCTGCTTTGGCTGCAGTAGATGAAGAAGCATCAGACCAAGGTGCTTACTACACTTGTGACGATCATTTTCCTCTGGTTGATAAATCCATCACAACTAATCTGGGACATGAGCAGGATCAATCACTTGATTGTCGTATGAACAATGGTTCTTGTGAGGCAACATTAAATTCAGAAGATAGTTCAGTCAGCCATCAACTTGACACTGTTAAGGATAAAATTGAGAAGAGAAATTTCCCTCGTGTGGCGAGATTGATGATATCTTTCCTGGTCAGGCTAATACCATTTTCTCATATTTTAAGATTGGAATTTTGGAAAAGGCAGAACAACAATGTTTACCCATCTAATTTGGGGGAAAGCATCTCGGATACTAATTCACCGGCACCTGAAGCTGTGGAAGAAGACTGTGTCCTTCCATGTTTACAGCGTCTTCAACAACTAGAAAAAATATACGAGGAACTCAGCAACAAGCCTGCTACCATTCCTTTAGAAAAGGATCGAATGCTTATGGAATCATTGGACAGGATTAAGTCCGTTGAATATGATCTTGAGCAAACAAAAAGAGTGTTGCATTCTGCAGTGGTAAAGCAAGTTGAGATTGCTAATTTGCTGGAGAATCTAGACGAGTCCAGATTTCATCGAAAGAGACTGTTCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CRAL_TRIO CRAL_TRIO_N

Protein Analysis

490

Amino Acids

55.78

Weight (kDa)

5.87

Isoelectric Point (pI)

45.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CRAL_TRIO PF00650 27 - 190 9.1e-29 CRAL/TRIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 2 cut(s) 96, 1195
AccII CGCG 1 cut(s) 331
AciI CCGC 2 cut(s) 453, 585
AclWI GGATC 4 cut(s) 577, 773, 939, 1317
AcoI YGGCCR 3 cut(s) 446, 450, 734
AcsI RAATTY 9 cut(s) 20, 53, 215, 239, 322, 461, 982, 1045, 1121
AcuI CTGAAG 3 cut(s) 681, 761, 1221
AfaI GTAC 5 cut(s) 98, 203, 334, 407, 577
AfiI CCNNNNNNNGG 2 cut(s) 762, 1057
AflIII ACRYGT 1 cut(s) 329
AgsI TTSAA 5 cut(s) 53, 255, 543, 1247, 1352
AjnI CCWGG 5 cut(s) 348, 424, 561, 686, 1080
AluBI AGCT 3 cut(s) 64, 646, 1205
AluI AGCT 3 cut(s) 64, 646, 1205
Alw21I GWGCWC 1 cut(s) 66
Alw26I GTCTC 5 cut(s) 133, 262, 383, 605, 1453
AlwI GGATC 4 cut(s) 577, 773, 939, 1317
AlwNI CAGNNNCTG 1 cut(s) 499
AoxI GGCC 4 cut(s) 122, 446, 450, 734
ApeKI GCWGC 3 cut(s) 260, 338, 827
ApoI RAATTY 9 cut(s) 20, 53, 215, 239, 322, 461, 982, 1045, 1121
Asp700I GAANNNNTTC 2 cut(s) 323, 805
Asp718I GGTACC 1 cut(s) 96
AspS9I GGNCC 2 cut(s) 422, 617
AsuHPI GGTGA 2 cut(s) 544, 1182
AvaII GGWCC 2 cut(s) 422, 617
BaeI ACNNNNGTAYC 2 cut(s) 88, 121
BanI GGYRCC 2 cut(s) 96, 1195
BanII GRGCYC 2 cut(s) 66, 154
BarI GAAGNNNNNNTAC 2 cut(s) 793, 825
BauI CACGAG 1 cut(s) 1053
BbsI GAAGAC 2 cut(s) 1221, 1235
Bbv12I GWGCWC 1 cut(s) 66
BbvI GCAGC 3 cut(s) 247, 325, 814
BccI CCATC 4 cut(s) 162, 911, 1014, 1162
BceAI ACGGC 1 cut(s) 749
BciT130I CCWGG 5 cut(s) 350, 426, 563, 688, 1082
BciVI GTATCC 1 cut(s) 1174
BcoDI GTCTC 5 cut(s) 133, 262, 383, 605, 1453
BfaI CTAG 4 cut(s) 609, 794, 1253, 1433
BfmI CTRYAG 2 cut(s) 828, 1389
BfuI GTATCC 1 cut(s) 1174
BisI GCNGC 4 cut(s) 261, 339, 453, 828
BlsI GCNGC 4 cut(s) 262, 340, 454, 829
Bme1390I CCNGG 5 cut(s) 350, 426, 563, 688, 1082
Bme18I GGWCC 2 cut(s) 422, 617
BmgT120I GGNCC 2 cut(s) 422, 617
BmiI GGNNCC 3 cut(s) 98, 504, 1197
BmrFI CCNGG 5 cut(s) 350, 426, 563, 688, 1082
BmrI ACTGGG 1 cut(s) 152
BmsI GCATC 4 cut(s) 429, 755, 854, 1182
BmuI ACTGGG 1 cut(s) 152
BpiI GAAGAC 2 cut(s) 1221, 1235
BplI GAGNNNNNCTC 2 cut(s) 585, 617
BpmI CTGGAG 2 cut(s) 548, 1445
BpuEI CTTGAG 3 cut(s) 75, 587, 1382
BsaJI CCNNGG 5 cut(s) 100, 562, 620, 687, 853
BsaWI WCCGGW 1 cut(s) 399
Bsc4I CCNNNNNNNGG 2 cut(s) 762, 1057
Bse118I RCCGGY 2 cut(s) 448, 1192
Bse1I ACTGG 3 cut(s) 147, 300, 531
BseBI CCWGG 5 cut(s) 350, 426, 563, 688, 1082
BseDI CCNNGG 5 cut(s) 100, 562, 620, 687, 853
BseGI GGATG 3 cut(s) 154, 304, 408
BseLI CCNNNNNNNGG 2 cut(s) 762, 1057
BseMII CTCAG 2 cut(s) 378, 1288
BseNI ACTGG 3 cut(s) 147, 300, 531
BseX3I CGGCCG 1 cut(s) 450
BseXI GCAGC 3 cut(s) 247, 325, 814
Bsh1236I CGCG 1 cut(s) 331
Bsh1285I CGRYCG 1 cut(s) 453
BshFI GGCC 4 cut(s) 124, 448, 452, 736
BshNI GGYRCC 2 cut(s) 96, 1195
BsiEI CGRYCG 1 cut(s) 453
BsiHKAI GWGCWC 1 cut(s) 66
BsiSI CCGG 3 cut(s) 400, 449, 1193
BslFI GGGAC 2 cut(s) 40, 933
BslI CCNNNNNNNGG 2 cut(s) 762, 1057
BsmAI GTCTC 5 cut(s) 133, 262, 383, 605, 1453
BsmFI GGGAC 2 cut(s) 40, 933
BsmI GAATGC 3 cut(s) 421, 1320, 1384
BsnI GGCC 4 cut(s) 124, 448, 452, 736
Bsp1286I GDGCHC 2 cut(s) 66, 154
Bsp1407I TGTACA 2 cut(s) 405, 575
Bsp143I GATC 6 cut(s) 569, 778, 877, 931, 1309, 1357
Bsp19I CCATGG 2 cut(s) 100, 620
BspACI CCGC 2 cut(s) 453, 585
BspANI GGCC 4 cut(s) 124, 448, 452, 736
BspCNI CTCAG 2 cut(s) 379, 1287
BspFNI CGCG 1 cut(s) 331
BspLI GGNNCC 3 cut(s) 98, 504, 1197
BspMAI CTGCAG 2 cut(s) 832, 1393
BspPI GGATC 4 cut(s) 577, 773, 939, 1317
BspQI GCTCTTC 1 cut(s) 142
BspT107I GGYRCC 2 cut(s) 96, 1195
BsrFI RCCGGY 2 cut(s) 448, 1192
BsrGI TGTACA 2 cut(s) 405, 575
BsrI ACTGG 3 cut(s) 147, 300, 531
BssAI RCCGGY 2 cut(s) 448, 1192
BssECI CCNNGG 5 cut(s) 100, 562, 620, 687, 853
BssMI GATC 6 cut(s) 569, 778, 877, 931, 1309, 1357
BssSI CACGAG 1 cut(s) 1053
BssT1I CCWWGG 3 cut(s) 100, 620, 853
Bst2BI CACGAG 1 cut(s) 1053
Bst2UI CCWGG 5 cut(s) 350, 426, 563, 688, 1082
Bst4CI ACNGT 3 cut(s) 1021, 1220, 1464
Bst6I CTCTTC 2 cut(s) 142, 1034
BstAUI TGTACA 2 cut(s) 405, 575
BstC8I GCNNGC 2 cut(s) 450, 1287
BstDEI CTNAG 2 cut(s) 387, 1274
BstDSI CCRYGG 2 cut(s) 100, 620
BstF5I GGATG 3 cut(s) 154, 304, 408
BstFNI CGCG 1 cut(s) 331
BstKTI GATC 6 cut(s) 572, 781, 880, 934, 1312, 1360
BstMAI GTCTC 5 cut(s) 133, 262, 383, 605, 1453
BstMBI GATC 6 cut(s) 569, 778, 877, 931, 1309, 1357
BstMCI CGRYCG 1 cut(s) 453
BstMWI GCNNNNNNNGC 3 cut(s) 752, 827, 1202
BstNI CCWGG 5 cut(s) 350, 426, 563, 688, 1082
BstNSI RCATGY 1 cut(s) 582
BstSCI CCNGG 5 cut(s) 348, 424, 561, 686, 1080
BstSFI CTRYAG 2 cut(s) 828, 1389
BstUI CGCG 1 cut(s) 331
BstV1I GCAGC 3 cut(s) 247, 325, 814
BstV2I GAAGAC 2 cut(s) 1221, 1235
BstZI CGGCCG 1 cut(s) 450
BsuI GTATCC 1 cut(s) 1174
BsuRI GGCC 4 cut(s) 124, 448, 452, 736
BtgI CCRYGG 2 cut(s) 100, 620
BtsCI GGATG 3 cut(s) 154, 304, 408
BtsI GCAGTG 1 cut(s) 1398
BtsIMutI CAGTG 3 cut(s) 737, 1017, 1398
Cac8I GCNNGC 2 cut(s) 450, 1287
CaiI CAGNNNCTG 1 cut(s) 499
Cfr10I RCCGGY 2 cut(s) 448, 1192
Cfr13I GGNCC 2 cut(s) 422, 617
CseI GACGC 1 cut(s) 1229
Csp6I GTAC 5 cut(s) 97, 202, 333, 406, 576
CviAII CATG 9 cut(s) 101, 206, 316, 358, 573, 579, 621, 923, 1230
CviQI GTAC 5 cut(s) 97, 202, 333, 406, 576
DdeI CTNAG 2 cut(s) 387, 1274
DpnI GATC 6 cut(s) 571, 780, 879, 933, 1311, 1359
DpnII GATC 6 cut(s) 569, 778, 877, 931, 1309, 1357
EaeI YGGCCR 3 cut(s) 446, 450, 734
EagI CGGCCG 1 cut(s) 450
Eam1104I CTCTTC 2 cut(s) 142, 1034
EarI CTCTTC 2 cut(s) 142, 1034
EciI GGCGGA 1 cut(s) 574
Ecl136II GAGCTC 1 cut(s) 64
EclXI CGGCCG 1 cut(s) 450
Eco130I CCWWGG 3 cut(s) 100, 620, 853
Eco147I AGGCCT 1 cut(s) 124
Eco24I GRGCYC 2 cut(s) 66, 154
Eco32I GATATC 2 cut(s) 631, 1074
Eco47I GGWCC 2 cut(s) 422, 617
Eco52I CGGCCG 1 cut(s) 450
Eco53kI GAGCTC 1 cut(s) 64
Eco57I CTGAAG 3 cut(s) 681, 761, 1221
EcoICRI GAGCTC 1 cut(s) 64
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 5 cut(s) 348, 424, 561, 686, 1080
EcoRV GATATC 2 cut(s) 631, 1074
EcoT14I CCWWGG 3 cut(s) 100, 620, 853
EcoT38I GRGCYC 2 cut(s) 66, 154
ErhI CCWWGG 3 cut(s) 100, 620, 853
FaeI CATG 9 cut(s) 104, 209, 319, 361, 576, 582, 624, 926, 1233
FaqI GGGAC 2 cut(s) 40, 933
FatI CATG 9 cut(s) 100, 205, 315, 357, 572, 578, 620, 922, 1229
Fnu4HI GCNGC 4 cut(s) 261, 339, 453, 828
FokI GGATG 3 cut(s) 141, 311, 415
FriOI GRGCYC 2 cut(s) 66, 154
FseI GGCCGGCC 1 cut(s) 452
Fsp4HI GCNGC 4 cut(s) 261, 339, 453, 828
FspBI CTAG 4 cut(s) 609, 794, 1253, 1433
GluI GCNGC 4 cut(s) 261, 339, 453, 828
GsuI CTGGAG 2 cut(s) 548, 1445
HaeIII GGCC 4 cut(s) 124, 448, 452, 736
HapII CCGG 3 cut(s) 400, 449, 1193
HgaI GACGC 1 cut(s) 1229
Hin1II CATG 9 cut(s) 104, 209, 319, 361, 576, 582, 624, 926, 1233
HindIII AAGCTT 1 cut(s) 644
HinfI GANTC 5 cut(s) 539, 716, 1325, 1429, 1439
HpaII CCGG 3 cut(s) 400, 449, 1193
HphI GGTGA 2 cut(s) 544, 1182
Hpy166II GTNNAC 3 cut(s) 130, 1150, 1235
Hpy188I TCNGA 5 cut(s) 729, 769, 850, 988, 1180
Hpy188III TCNNGA 7 cut(s) 25, 386, 467, 634, 1361, 1433, 1443
Hpy8I GTNNAC 3 cut(s) 130, 1150, 1235
HpyAV CCTTC 5 cut(s) 110, 584, 736, 795, 1235
HpyCH4III ACNGT 3 cut(s) 1021, 1220, 1464
HpyCH4V TGCA 9 cut(s) 79, 172, 263, 304, 341, 652, 830, 1384, 1391
HpyF10VI GCNNNNNNNGC 3 cut(s) 752, 827, 1202
HpyF3I CTNAG 2 cut(s) 387, 1274
Hsp92II CATG 9 cut(s) 104, 209, 319, 361, 576, 582, 624, 926, 1233
KpnI GGTACC 1 cut(s) 100
KroI GCCGGC 1 cut(s) 448
KroNI GCCGGC 1 cut(s) 450
Kzo9I GATC 6 cut(s) 569, 778, 877, 931, 1309, 1357
LguI GCTCTTC 1 cut(s) 142
LmnI GCTCC 1 cut(s) 587
Lsp1109I GCAGC 3 cut(s) 247, 325, 814
LweI GCATC 4 cut(s) 429, 755, 854, 1182
MaeI CTAG 4 cut(s) 609, 794, 1253, 1433
MaeIII GTNAC 2 cut(s) 682, 872
MalI GATC 6 cut(s) 571, 780, 879, 933, 1311, 1359
MboI GATC 6 cut(s) 569, 778, 877, 931, 1309, 1357
MboII GAAGA 8 cut(s) 159, 448, 851, 1001, 1051, 1223, 1226, 1235
MfeI CAATTG 1 cut(s) 255
MhlI GDGCHC 2 cut(s) 66, 154
MluI ACGCGT 1 cut(s) 329
MlyI GAGTC 2 cut(s) 710, 1448
MroNI GCCGGC 1 cut(s) 448
MroXI GAANNNNTTC 2 cut(s) 323, 805
MseI TTAA 6 cut(s) 6, 432, 980, 1023, 1112, 1341
MslI CAYNNNNRTG 1 cut(s) 577
MspI CCGG 3 cut(s) 400, 449, 1193
MspR9I CCNGG 5 cut(s) 350, 426, 563, 688, 1082
MunI CAATTG 1 cut(s) 255
Mva1269I GAATGC 3 cut(s) 421, 1320, 1384
MvaI CCWGG 5 cut(s) 350, 426, 563, 688, 1082
MvnI CGCG 1 cut(s) 331
MwoI GCNNNNNNNGC 3 cut(s) 752, 827, 1202
NaeI GCCGGC 1 cut(s) 450
NcoI CCATGG 2 cut(s) 100, 620
NdeII GATC 6 cut(s) 569, 778, 877, 931, 1309, 1357
NgoMIV GCCGGC 1 cut(s) 448
NlaIII CATG 9 cut(s) 104, 209, 319, 361, 576, 582, 624, 926, 1233
NlaIV GGNNCC 3 cut(s) 98, 504, 1197
NmuCI GTSAC 1 cut(s) 872
NspI RCATGY 1 cut(s) 582
PceI AGGCCT 1 cut(s) 124
PciSI GCTCTTC 1 cut(s) 142
PctI GAATGC 3 cut(s) 421, 1320, 1384
PdiI GCCGGC 1 cut(s) 450
PdmI GAANNNNTTC 2 cut(s) 323, 805
PfeI GAWTC 3 cut(s) 539, 1325, 1429
PflFI GACNNNGTC 1 cut(s) 1220
PkrI GCNGC 4 cut(s) 262, 340, 454, 829
PleI GAGTC 2 cut(s) 710, 1447
PpsI GAGTC 2 cut(s) 710, 1447
Psp124BI GAGCTC 1 cut(s) 66
Psp6I CCWGG 5 cut(s) 348, 424, 561, 686, 1080
PspGI CCWGG 5 cut(s) 348, 424, 561, 686, 1080
PspN4I GGNNCC 3 cut(s) 98, 504, 1197
PspPI GGNCC 2 cut(s) 422, 617
PstI CTGCAG 2 cut(s) 832, 1393
PstNI CAGNNNCTG 1 cut(s) 499
PsyI GACNNNGTC 1 cut(s) 1220
RigI GGCCGGCC 1 cut(s) 452
RsaI GTAC 5 cut(s) 98, 203, 334, 407, 577
RsaNI GTAC 5 cut(s) 97, 202, 333, 406, 576
RseI CAYNNNNRTG 1 cut(s) 577
SacI GAGCTC 1 cut(s) 66
SapI GCTCTTC 1 cut(s) 142
SaqAI TTAA 6 cut(s) 6, 432, 980, 1023, 1112, 1341
SatI GCNGC 4 cut(s) 261, 339, 453, 828
Sau3AI GATC 6 cut(s) 569, 778, 877, 931, 1309, 1357
Sau96I GGNCC 2 cut(s) 422, 617
SchI GAGTC 2 cut(s) 710, 1448
ScrFI CCNGG 5 cut(s) 350, 426, 563, 688, 1082
SduI GDGCHC 2 cut(s) 66, 154
SetI ASST 9 cut(s) 66, 198, 498, 534, 619, 648, 859, 1201, 1207
SfaNI GCATC 4 cut(s) 429, 755, 854, 1182
SfcI CTRYAG 2 cut(s) 828, 1389
SinI GGWCC 2 cut(s) 422, 617
SmiMI CAYNNNNRTG 1 cut(s) 577
SmlI CTYRAG 3 cut(s) 90, 602, 1361
SmoI CTYRAG 3 cut(s) 90, 602, 1361
SseBI AGGCCT 1 cut(s) 124
SsiI CCGC 2 cut(s) 453, 585
SspI AATATT 1 cut(s) 83
SspMI CTAG 4 cut(s) 609, 794, 1253, 1433
SstI GAGCTC 1 cut(s) 66
StuI AGGCCT 1 cut(s) 124
StyD4I CCNGG 5 cut(s) 348, 424, 561, 686, 1080
StyI CCWWGG 3 cut(s) 100, 620, 853
TaaI ACNGT 3 cut(s) 1021, 1220, 1464
TaqI TCGA 5 cut(s) 66, 633, 695, 1312, 1453
TatI WGTACW 2 cut(s) 405, 575
TauI GCSGC 1 cut(s) 455
TfiI GAWTC 3 cut(s) 539, 1325, 1429
Tru1I TTAA 6 cut(s) 6, 432, 980, 1023, 1112, 1341
Tru9I TTAA 6 cut(s) 6, 432, 980, 1023, 1112, 1341
TscAI CASTG 3 cut(s) 744, 1024, 1398
TseFI GTSAC 1 cut(s) 872
TseI GCWGC 3 cut(s) 260, 338, 827
Tsp45I GTSAC 1 cut(s) 872
TspDTI ATGAA 7 cut(s) 84, 332, 656, 777, 852, 968, 1439
TspGWI ACGGA 1 cut(s) 1336
TspRI CASTG 3 cut(s) 744, 1024, 1398
Tth111I GACNNNGTC 1 cut(s) 1220
VpaK11BI GGWCC 2 cut(s) 422, 617
XapI RAATTY 9 cut(s) 20, 53, 215, 239, 322, 461, 982, 1045, 1121
XbaI TCTAGA 1 cut(s) 1432
XceI RCATGY 1 cut(s) 582
XmnI GAANNNNTTC 2 cut(s) 323, 805
XspI CTAG 4 cut(s) 609, 794, 1253, 1433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.