Rorug06G0018200

Diaminopimelate decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012138
Physical Location & Seq
Reverse (-)
2418194 .. 2419633
1440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0018200.1

Sequence Viewer

Length: 1440 bp
ATGTATCAGCGGGGATTAGCAGCAGCAGCAGCAAGGTTAAGAGGAGGGATTGGATTAGGTTCTTTAAGGCAAATTAGCAGCAGCTTTTCAGATCATGGATTCATCAGAAGAAGGTATTCTTCCATGGAGACGACGAAGTCCCTACACTTGTGTTTCTCTGAGCATATCGCAGCAACAGATGACTCTACTCGCGACGTTGTTCGCTCCATCAAATTGAGCGATTTGTTATCACCACCACCAACAACAACAGCAGCAGCAGCTACGTTTGAGCACGAAACATATCATGATTCTGAAACCCGTGGTTGGTCACCCTTTCCGTGGGGTTGCTGTCGCTTCGGGTCCCAAATTCTCTTCGCCGGCGGCAACCAAGGCGCACGCGACTCCATTTACGGCAAGTCGGTTAGGGGAGAAATTGTTGCCTTTGATCCTAATTCGTGTCCGAAACCGAAATTCAAGTCTCCTAAATTCACACGACCGCGTCAACATCATTATCAATTCCCAATTGCGCTGTTGCAGGTGGAGGACAGACTCTACTGTCTTGACACTAGAAGCCAGCAATATTATAGTACTGCTCCCAATTTCATTCTCAGACCGAACTATCACCACTATACCGAGGCTCCTCCTGCTTTTGCAGTATTCGACCCTGAAGGTGATGGAGAGTTTGAGGCCAAATGGTTGCCTCTGGAGTCGCCTCCTCCGGCTATACTCTACGATGAGAAATCCCACAAGCTGAACGAGCTTATGTATTGTGCTGTTGATTCCAAAATCTTGGTCTGGAATCAAGATAAGGCCAAGGTTTACCGCTTTGACGTGAGCCGACCCGAGAAAGGGTGGATAGAGTTGCACTCTCCTCTAGCAACCACCCTTCCCTTTGTTAAGGGTTGTTGGGGTGACACTGCAAAGCTCCCCGATCATCATGGTGGTGGAGGAACCCTAATATTTACCTTTGACTGTACAAGTGGATGTAAAGTTAGTGATGGTTGCAAATATTATGGGACTCAGATCAGTAACAACATTAGTGTACAAGTTTTGCTCATGTCCCATAATTTAGATTCTTTGCAAGCCATGAAACCCCTCCTGCAGCTGCCGGAAGTCCCTCCTGAATTTCGCAATGATCCATGCGTGAGAGCAGTTGGTCCAACCGAGTGTTGTCTTGTGCATCTAGGAGATCACAAAGTGTGCCTTATTCTTCACAAATATTTCTACGCATTATACTGTGACACTAATGATTTGGAGGAAGGTTACGAACTAGTTGATCATACCGGCAGAAACAAGGGGATTCTTCATCTCATGACGTTTCAATATCAAGTTACTCCCGACTTGGACATCGAGTACCAACTTCTCACTACTCGCAACTTTGAATACTATACCAAGCTGCCTAACAACGAATATGCAACGTATACCAATCAAGCCTGTCTGACTAAAGCCTTTGTCATCTAA

Protein Analysis

479

Amino Acids

54.15

Weight (kDa)

6.44

Isoelectric Point (pI)

54.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1668 PF07893 101 - 292 3e-06 Protein of unknown function (DUF1668)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012138)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G14390 AT5G11880
fragaria_vesca FvH4_2g09380
malus_domestica MD05G1063100.v1.1 MD10G1070600.v1.1
prunus_persica Prupe.8G092300_v2.0.a1 Prupe.8G092300_v2.0.a1
pyrus_communis pycom05g05450 pycom10g05640
rosa_chinensis RchiOBHm_Chr6g0265651
rosa_laevigata RLG00000014169
rosa_multiflora Rmu_sc0003233.1_g000010
rosa_roxburghii Rroxscaffold_175G00432470 Rroxscaffold_7G00202530
rosa_rugosa Rorug06G0018200
rosa_samantha Rh6AG140300 Rh6BG140100 Rh6CG137200
rosa_wichuraiana Rw6G012110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 505
AasI GACNNNNNNGTC 2 cut(s) 136, 534
Acc36I ACCTGC 1 cut(s) 505
AccI GTMKAC 1 cut(s) 1400
AccII CGCG 3 cut(s) 192, 378, 478
AciI CCGC 4 cut(s) 10, 360, 476, 802
AclWI GGATC 2 cut(s) 419, 1109
AcsI RAATTY 4 cut(s) 345, 449, 464, 1103
AcuI CTGAAG 1 cut(s) 666
AdeI CACNNNGTG 1 cut(s) 1177
AfaI GTAC 4 cut(s) 568, 955, 1023, 1334
AfiI CCNNNNNNNGG 4 cut(s) 303, 318, 827, 828
AgsI TTSAA 3 cut(s) 454, 1301, 1361
AhlI ACTAGT 1 cut(s) 1249
AjiI CACGTC 1 cut(s) 811
AluBI AGCT 7 cut(s) 84, 260, 730, 739, 904, 1084, 1375
AluI AGCT 7 cut(s) 84, 260, 730, 739, 904, 1084, 1375
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 2 cut(s) 122, 462
AlwI GGATC 2 cut(s) 419, 1109
Ama87I CYCGRG 1 cut(s) 821
AoxI GGCC 2 cut(s) 666, 789
ApoI RAATTY 4 cut(s) 345, 449, 464, 1103
ArsI GACNNNNNNTTYG 4 cut(s) 440, 472, 756, 788
Asp700I GAANNNNTTC 1 cut(s) 115
AspLEI GCGC 2 cut(s) 374, 508
AspS9I GGNCC 2 cut(s) 339, 1136
AsuHPI GGTGA 5 cut(s) 222, 300, 593, 662, 902
AvaI CYCGRG 1 cut(s) 821
AvaII GGWCC 2 cut(s) 339, 1136
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 3 cut(s) 215, 647, 971
BceAI ACGGC 1 cut(s) 406
BclI TGATCA 1 cut(s) 1255
BcoDI GTCTC 2 cut(s) 122, 462
BcuI ACTAGT 1 cut(s) 1249
BfaI CTAG 4 cut(s) 546, 854, 1163, 1250
BfmI CTRYAG 1 cut(s) 1079
BfuAI ACCTGC 1 cut(s) 505
BmcAI AGTACT 1 cut(s) 568
Bme18I GGWCC 2 cut(s) 339, 1136
BmeT110I CYCGRG 1 cut(s) 821
BmgBI CACGTC 1 cut(s) 811
BmgT120I GGNCC 2 cut(s) 339, 1136
BmiI GGNNCC 4 cut(s) 340, 341, 618, 931
BmsI GCATC 1 cut(s) 1168
BplI GAGNNNNNCTC 2 cut(s) 830, 862
BpmI CTGGAG 1 cut(s) 704
BsaJI CCNNGG 6 cut(s) 123, 298, 317, 367, 612, 792
BsaXI ACNNNNNCTCC 4 cut(s) 399, 429, 601, 631
Bsc4I CCNNNNNNNGG 4 cut(s) 303, 318, 827, 828
Bse118I RCCGGY 2 cut(s) 356, 1262
Bse3DI GCAATG 1 cut(s) 1117
BseDI CCNNGG 6 cut(s) 123, 298, 317, 367, 612, 792
BseGI GGATG 1 cut(s) 968
BseLI CCNNNNNNNGG 4 cut(s) 303, 318, 827, 828
BseMI GCAATG 1 cut(s) 1117
BseMII CTCAG 3 cut(s) 150, 601, 1013
BseRI GAGGAG 4 cut(s) 57, 609, 684, 840
Bsh1236I CGCG 3 cut(s) 192, 378, 478
Bsh1285I CGRYCG 1 cut(s) 476
BshFI GGCC 2 cut(s) 668, 791
BsiEI CGRYCG 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 821
BsiSI CCGG 4 cut(s) 357, 698, 1088, 1263
BslFI GGGAC 5 cut(s) 124, 325, 1009, 1024, 1079
BslI CCNNNNNNNGG 4 cut(s) 303, 318, 827, 828
BsmAI GTCTC 2 cut(s) 122, 462
BsmBI CGTCTC 1 cut(s) 122
BsmFI GGGAC 5 cut(s) 124, 325, 1009, 1024, 1079
BsnI GGCC 2 cut(s) 668, 791
BsoBI CYCGRG 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 273
Bsp1407I TGTACA 2 cut(s) 953, 1021
Bsp143I GATC 7 cut(s) 91, 424, 910, 1002, 1114, 1168, 1255
Bsp19I CCATGG 1 cut(s) 123
Bsp68I TCGCGA 1 cut(s) 192
BspACI CCGC 4 cut(s) 10, 360, 476, 802
BspANI GGCC 2 cut(s) 668, 791
BspCNI CTCAG 3 cut(s) 151, 600, 1012
BspFNI CGCG 3 cut(s) 192, 378, 478
BspHI TCATGA 2 cut(s) 283, 1290
BspLI GGNNCC 4 cut(s) 340, 341, 618, 931
BspMAI CTGCAG 1 cut(s) 1083
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 2 cut(s) 419, 1109
BsrDI GCAATG 1 cut(s) 1117
BsrFI RCCGGY 2 cut(s) 356, 1262
BsrGI TGTACA 2 cut(s) 953, 1021
BssAI RCCGGY 2 cut(s) 356, 1262
BssECI CCNNGG 6 cut(s) 123, 298, 317, 367, 612, 792
BssMI GATC 7 cut(s) 91, 424, 910, 1002, 1114, 1168, 1255
BssNAI GTATAC 1 cut(s) 1401
BssT1I CCWWGG 3 cut(s) 123, 367, 792
Bst1107I GTATAC 1 cut(s) 1401
Bst4CI ACNGT 3 cut(s) 536, 953, 1217
Bst6I CTCTTC 1 cut(s) 356
BstAUI TGTACA 2 cut(s) 953, 1021
BstC8I GCNNGC 4 cut(s) 358, 376, 554, 1062
BstDEI CTNAG 3 cut(s) 159, 587, 999
BstDSI CCRYGG 3 cut(s) 123, 298, 317
BstEII GGTNACC 1 cut(s) 306
BstF5I GGATG 1 cut(s) 968
BstFNI CGCG 3 cut(s) 192, 378, 478
BstHHI GCGC 2 cut(s) 374, 508
BstKTI GATC 7 cut(s) 94, 427, 913, 1005, 1117, 1171, 1258
BstMAI GTCTC 2 cut(s) 122, 462
BstMBI GATC 7 cut(s) 91, 424, 910, 1002, 1114, 1168, 1255
BstMCI CGRYCG 1 cut(s) 476
BstMWI GCNNNNNNNGC 6 cut(s) 26, 29, 257, 369, 623, 736
BstPI GGTNACC 1 cut(s) 306
BstSFI CTRYAG 1 cut(s) 1079
BstUI CGCG 3 cut(s) 192, 378, 478
BstXI CCANNNNNNTGG 1 cut(s) 769
BstZ17I GTATAC 1 cut(s) 1401
BsuRI GGCC 2 cut(s) 668, 791
BtgI CCRYGG 3 cut(s) 123, 298, 317
BtrI CACGTC 1 cut(s) 811
BtsCI GGATG 1 cut(s) 968
BtsI GCAGTG 1 cut(s) 894
BtsIMutI CAGTG 1 cut(s) 894
BtuMI TCGCGA 1 cut(s) 192
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 4 cut(s) 358, 376, 554, 1062
CciI TCATGA 2 cut(s) 283, 1290
CfoI GCGC 2 cut(s) 374, 508
Cfr10I RCCGGY 2 cut(s) 356, 1262
Cfr13I GGNCC 2 cut(s) 339, 1136
CseI GACGC 1 cut(s) 467
Csp6I GTAC 4 cut(s) 567, 954, 1022, 1333
CviAII CATG 8 cut(s) 95, 124, 284, 917, 1036, 1066, 1119, 1291
CviQI GTAC 4 cut(s) 567, 954, 1022, 1333
DdeI CTNAG 3 cut(s) 159, 587, 999
DpnI GATC 7 cut(s) 93, 426, 912, 1004, 1116, 1170, 1257
DpnII GATC 7 cut(s) 91, 424, 910, 1002, 1114, 1168, 1255
DraIII CACNNNGTG 1 cut(s) 1177
DrdI GACNNNNNNGTC 2 cut(s) 136, 534
DseDI GACNNNNNNGTC 2 cut(s) 136, 534
Eam1104I CTCTTC 1 cut(s) 356
EarI CTCTTC 1 cut(s) 356
Eco130I CCWWGG 3 cut(s) 123, 367, 792
Eco47I GGWCC 2 cut(s) 339, 1136
Eco57I CTGAAG 1 cut(s) 666
Eco88I CYCGRG 1 cut(s) 821
Eco91I GGTNACC 1 cut(s) 306
EcoO109I RGGNCCY 1 cut(s) 339
EcoO65I GGTNACC 1 cut(s) 306
EcoT14I CCWWGG 3 cut(s) 123, 367, 792
ErhI CCWWGG 3 cut(s) 123, 367, 792
Esp3I CGTCTC 1 cut(s) 122
FaeI CATG 8 cut(s) 98, 127, 287, 920, 1039, 1069, 1122, 1294
FalI AAGNNNNNCTT 4 cut(s) 103, 135, 1167, 1199
FaqI GGGAC 5 cut(s) 124, 325, 1009, 1024, 1079
FatI CATG 8 cut(s) 94, 123, 283, 916, 1035, 1065, 1118, 1290
FauI CCCGC 1 cut(s) 3
FbaI TGATCA 1 cut(s) 1255
FblI GTMKAC 1 cut(s) 1400
FokI GGATG 1 cut(s) 975
FspBI CTAG 4 cut(s) 546, 854, 1163, 1250
GlaI GCGC 2 cut(s) 373, 507
GsuI CTGGAG 1 cut(s) 704
HaeIII GGCC 2 cut(s) 668, 791
HapII CCGG 4 cut(s) 357, 698, 1088, 1263
HgaI GACGC 1 cut(s) 467
HhaI GCGC 2 cut(s) 374, 508
Hin1II CATG 8 cut(s) 98, 127, 287, 920, 1039, 1069, 1122, 1294
Hin6I GCGC 2 cut(s) 372, 506
HinP1I GCGC 2 cut(s) 372, 506
HincII GTYRAC 1 cut(s) 482
HindII GTYRAC 1 cut(s) 482
HpaII CCGG 4 cut(s) 357, 698, 1088, 1263
HphI GGTGA 5 cut(s) 222, 300, 593, 662, 902
Hpy166II GTNNAC 4 cut(s) 482, 799, 1022, 1401
Hpy188I TCNGA 8 cut(s) 91, 107, 160, 292, 441, 590, 1002, 1419
Hpy188III TCNNGA 9 cut(s) 191, 284, 539, 683, 775, 782, 1100, 1291, 1316
Hpy8I GTNNAC 4 cut(s) 482, 799, 1022, 1401
Hpy99I CGWCG 2 cut(s) 136, 197
HpyAV CCTTC 4 cut(s) 105, 641, 875, 1232
HpyCH4III ACNGT 3 cut(s) 536, 953, 1217
HpyCH4IV ACGT 5 cut(s) 195, 263, 810, 1295, 1397
HpyCH4V TGCA 9 cut(s) 514, 632, 844, 899, 984, 1060, 1081, 1159, 1394
HpyF10VI GCNNNNNNNGC 6 cut(s) 26, 29, 257, 369, 623, 736
HpyF3I CTNAG 3 cut(s) 159, 587, 999
HpySE526I ACGT 5 cut(s) 195, 263, 810, 1295, 1397
Hsp92II CATG 8 cut(s) 98, 127, 287, 920, 1039, 1069, 1122, 1294
HspAI GCGC 2 cut(s) 372, 506
KflI GGGWCCC 1 cut(s) 339
KroI GCCGGC 1 cut(s) 356
KroNI GCCGGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 1255
Kzo9I GATC 7 cut(s) 91, 424, 910, 1002, 1114, 1168, 1255
LmnI GCTCC 4 cut(s) 209, 577, 622, 909
LweI GCATC 1 cut(s) 1168
MaeI CTAG 4 cut(s) 546, 854, 1163, 1250
MaeII ACGT 5 cut(s) 195, 263, 810, 1295, 1397
MaeIII GTNAC 6 cut(s) 306, 890, 1007, 1217, 1241, 1309
MalI GATC 7 cut(s) 93, 426, 912, 1004, 1116, 1170, 1257
MboI GATC 7 cut(s) 91, 424, 910, 1002, 1114, 1168, 1255
MboII GAAGA 5 cut(s) 111, 120, 343, 1181, 1274
MfeI CAATTG 1 cut(s) 501
MhlI GDGCHC 1 cut(s) 273
MlyI GAGTC 5 cut(s) 176, 374, 522, 695, 991
MmeI TCCRAC 1 cut(s) 1163
MreI CGCCGGCG 1 cut(s) 356
MroNI GCCGGC 1 cut(s) 356
MroXI GAANNNNTTC 1 cut(s) 115
MseI TTAA 3 cut(s) 38, 65, 876
MslI CAYNNNNRTG 2 cut(s) 918, 921
MspA1I CMGCKG 2 cut(s) 10, 1084
MspI CCGG 4 cut(s) 357, 698, 1088, 1263
MunI CAATTG 1 cut(s) 501
MvnI CGCG 3 cut(s) 192, 378, 478
MwoI GCNNNNNNNGC 6 cut(s) 26, 29, 257, 369, 623, 736
NaeI GCCGGC 1 cut(s) 358
NcoI CCATGG 1 cut(s) 123
NdeII GATC 7 cut(s) 91, 424, 910, 1002, 1114, 1168, 1255
NgoMIV GCCGGC 1 cut(s) 356
NlaIII CATG 8 cut(s) 98, 127, 287, 920, 1039, 1069, 1122, 1294
NlaIV GGNNCC 4 cut(s) 340, 341, 618, 931
NmuCI GTSAC 3 cut(s) 306, 890, 1217
NruI TCGCGA 1 cut(s) 192
PagI TCATGA 2 cut(s) 283, 1290
PaqCI CACCTGC 1 cut(s) 505
PdiI GCCGGC 1 cut(s) 358
PdmI GAANNNNTTC 1 cut(s) 115
PfeI GAWTC 6 cut(s) 99, 287, 758, 778, 1052, 1279
PflFI GACNNNGTC 2 cut(s) 136, 477
PleI GAGTC 5 cut(s) 176, 374, 522, 694, 991
PpsI GAGTC 5 cut(s) 176, 374, 522, 694, 991
PpuMI RGGWCCY 1 cut(s) 339
Psp5II RGGWCCY 1 cut(s) 339
PspEI GGTNACC 1 cut(s) 306
PspN4I GGNNCC 4 cut(s) 340, 341, 618, 931
PspPI GGNCC 2 cut(s) 339, 1136
PspPPI RGGWCCY 1 cut(s) 339
PstI CTGCAG 1 cut(s) 1083
PsyI GACNNNGTC 2 cut(s) 136, 477
PvuII CAGCTG 1 cut(s) 1084
RruI TCGCGA 1 cut(s) 192
RsaI GTAC 4 cut(s) 568, 955, 1023, 1334
RsaNI GTAC 4 cut(s) 567, 954, 1022, 1333
RseI CAYNNNNRTG 2 cut(s) 918, 921
SaqAI TTAA 3 cut(s) 38, 65, 876
Sau3AI GATC 7 cut(s) 91, 424, 910, 1002, 1114, 1168, 1255
Sau96I GGNCC 2 cut(s) 339, 1136
ScaI AGTACT 1 cut(s) 568
SchI GAGTC 5 cut(s) 176, 374, 522, 695, 991
SduI GDGCHC 1 cut(s) 273
SfaNI GCATC 1 cut(s) 1168
SfcI CTRYAG 1 cut(s) 1079
SgrAI CRCCGGYG 1 cut(s) 356
SinI GGWCC 2 cut(s) 339, 1136
SmiMI CAYNNNNRTG 2 cut(s) 918, 921
SpeI ACTAGT 1 cut(s) 1249
SsiI CCGC 4 cut(s) 10, 360, 476, 802
SspI AATATT 4 cut(s) 560, 939, 989, 1199
SspMI CTAG 4 cut(s) 546, 854, 1163, 1250
StyI CCWWGG 3 cut(s) 123, 367, 792
TaaI ACNGT 3 cut(s) 536, 953, 1217
TaiI ACGT 5 cut(s) 198, 266, 813, 1298, 1400
TaqI TCGA 2 cut(s) 639, 1329
TaqII GACCGA 1 cut(s) 607
TatI WGTACW 3 cut(s) 566, 953, 1021
TauI GCSGC 1 cut(s) 363
TfiI GAWTC 6 cut(s) 99, 287, 758, 778, 1052, 1279
Tru1I TTAA 3 cut(s) 38, 65, 876
Tru9I TTAA 3 cut(s) 38, 65, 876
TscAI CASTG 1 cut(s) 901
TseFI GTSAC 3 cut(s) 306, 890, 1217
Tsp45I GTSAC 3 cut(s) 306, 890, 1217
TspDTI ATGAA 4 cut(s) 91, 571, 1082, 1274
TspGWI ACGGA 1 cut(s) 306
TspRI CASTG 1 cut(s) 901
Tth111I GACNNNGTC 2 cut(s) 136, 477
VpaK11BI GGWCC 2 cut(s) 339, 1136
XapI RAATTY 4 cut(s) 345, 449, 464, 1103
XmiI GTMKAC 1 cut(s) 1400
XmnI GAANNNNTTC 1 cut(s) 115
XspI CTAG 4 cut(s) 546, 854, 1163, 1250
ZrmI AGTACT 1 cut(s) 568
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.