Rorug06G0148100

Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0017393
Physical Location & Seq
Forward (+)
21247685 .. 21249268
1584 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0148100.1

Sequence Viewer

Length: 1248 bp
ATGATGAGTGTGGCTACTGTCTCTCCGATTTTACATAATATTGATAACCTTGTTGGGTATCTCAAGAGGGGACGAGGGTTGGATTCTGATTACAGTGACCTAGGATTGCTAGATCACAGGGCCAAAAGGCTTAAGGTCTTAGAGACTGATGTGGGAATTTCACAAGAGGCAAGATTTGCTTTTGATGAAAAACCCATGTCTTCTCAAGTGAGATTTGGGTATATACCCAAGGGGTCAGTGCTTGGGGATGACGAAATTGATCGATTACGCAATGAAAACACTAGGAATTTATTGTTGAACCATAAGAAACTTCATCTGGTTCTTGATCTAGACCACACCCTGCTGAATACCACTTTCCTTGATGAGATGTCACCCGACGAAGAATATCTCAAGACCCAAACCCAATCTCATCATTCTCTGCAATATGTTCACATTGTGGACACCCCCAGTAGGCAACTGATGACCAAGTTGAGGCCTTATATTAGGACATTTTTAGTGCAAGCCAGTCAAATGTTTGAGCTCTCCATTTACACAATGGGTACTCGAGATTATGCGCTCGAAATGGCTAAGCTGCTTGATCCCGGAAATCATATCTTTGGTGGTCGAGTCATATCGCGTAATGATAGCACAGAAACAGATAGAAAGAGTCTAGATGTCCTGCTTGCCCGAGATTCTGCTGTTGTGATCCTTGATGATACCAAAAGTGTGTGGACAAATGACAACAGGGACAATGTAATACTGATGCCTAGATACCATTTCTTTAGATCTAGTTGTCAAAAGTTTGGCCTCAGTAATCGTAAACCTTATTCCGAGTTGAAGACCGATGAATTTGACCGGTATGGAGGAGCTTACCTTGCAAATGTACTTCAACTTCTTGGGTATATCCACACTATATTCTTTAATGAAGTTGAGTTACGGGGGTGGGATCTTATCGACAGAGATGTAAGGCTCGTCTTGAAAATCCTTAAGAAGGAAGTCTTGAAGGACTGTAAAATTGTTTTCAGCCATGTATTCCCCTCAAATGTCGAGGCTGATACTCATCCTTTGTGGAAGATGGCGGAGCAGCTAGGCGCTACTTGTTCAACACAAGTCGATCCATCAGTCACACATGTGGTTGCAGCAAATCCTCGAACACAGAAATCGTGTTGGGCAGTTAAAGAAGGAAAGTTTTTGGTGAATCCTCAATGGATTCGTACTGCAAATTTTATGTGGCAAAAGCAACCTGAAGATAATTTTCCCTGTCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110
Pfam Domains
Protein Families
Lipoxygenase PLAT

Protein Analysis

415

Amino Acids

47.82

Weight (kDa)

6.74

Isoelectric Point (pI)

35.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NIF PF03031 105 - 254 2.5e-24 NLI interacting factor-like phosphatase
BRCT PF00533 325 - 398 1.4e-09 BRCA1 C Terminus (BRCT) domain
PTCB-BRCT PF12738 344 - 396 1.6e-06 twin BRCT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017393)

Species Orthologous Gene IDs
malus_domestica MD05G1156900.v1.1
prunus_persica Prupe.8G189000_v2.0.a1 Prupe.8G189000_v2.0.a1
pyrus_communis pycom05g14950
rosa_chinensis RchiOBHm_Chr6g0282631
rosa_laevigata RLG00000012879
rosa_rugosa Rorug06G0148000 Rorug06G0148100
rosa_samantha Rh6AG261400 Rh6BG264500 Rh6CG263700 Rh6DG255900
rosa_wichuraiana Rw6G022600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 616
AciI CCGC 1 cut(s) 1058
AclWI GGATC 4 cut(s) 572, 679, 933, 1088
AcsI RAATTY 4 cut(s) 156, 286, 827, 1201
AcuI CTGAAG 1 cut(s) 1245
AdeI CACNNNGTG 1 cut(s) 436
AfaI GTAC 3 cut(s) 541, 864, 1195
AfiI CCNNNNNNNGG 3 cut(s) 450, 471, 970
AflII CTTAAG 2 cut(s) 131, 965
AflIII ACRYGT 1 cut(s) 1108
AgeI ACCGGT 1 cut(s) 834
AgsI TTSAA 6 cut(s) 298, 817, 869, 958, 982, 1083
AleI CACNNNNGTG 1 cut(s) 1109
AluBI AGCT 4 cut(s) 520, 571, 848, 1066
AluI AGCT 4 cut(s) 520, 571, 848, 1066
Alw21I GWGCWC 1 cut(s) 522
Alw26I GTCTC 2 cut(s) 25, 137
AlwI GGATC 4 cut(s) 572, 679, 933, 1088
Ama87I CYCGRG 2 cut(s) 543, 666
AoxI GGCC 3 cut(s) 120, 473, 784
ApeKI GCWGC 3 cut(s) 571, 1063, 1118
ApoI RAATTY 4 cut(s) 156, 286, 827, 1201
AsiGI ACCGGT 1 cut(s) 834
AspA2I CCTAGG 1 cut(s) 100
AspLEI GCGC 2 cut(s) 556, 1073
AspS9I GGNCC 1 cut(s) 120
AsuC2I CCSGG 1 cut(s) 582
AsuHPI GGTGA 2 cut(s) 363, 1186
AvaI CYCGRG 2 cut(s) 543, 666
AvrII CCTAGG 1 cut(s) 100
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 4 cut(s) 855, 887, 897, 929
BbsI GAAGAC 2 cut(s) 192, 824
Bbv12I GWGCWC 1 cut(s) 522
BbvI GCAGC 3 cut(s) 558, 1075, 1130
BccI CCATC 2 cut(s) 1048, 1105
BcnI CCSGG 1 cut(s) 582
BcoDI GTCTC 2 cut(s) 25, 137
BfaI CTAG 8 cut(s) 101, 110, 282, 329, 650, 747, 768, 1067
BfoI RGCGCY 1 cut(s) 1074
BfrI CTTAAG 2 cut(s) 131, 965
BglII AGATCT 1 cut(s) 764
BisI GCNGC 3 cut(s) 572, 1064, 1119
BlnI CCTAGG 1 cut(s) 100
BlpI GCTNAGC 1 cut(s) 567
BlsI GCNGC 3 cut(s) 573, 1065, 1120
Bme1390I CCNGG 1 cut(s) 582
BmeT110I CYCGRG 2 cut(s) 543, 666
BmgT120I GGNCC 1 cut(s) 120
BmrFI CCNGG 1 cut(s) 582
BmrI ACTGGG 1 cut(s) 441
BmsI GCATC 1 cut(s) 732
BmuI ACTGGG 1 cut(s) 441
BpiI GAAGAC 2 cut(s) 192, 824
Bpu1102I GCTNAGC 1 cut(s) 567
BpuEI CTTGAG 3 cut(s) 47, 189, 374
BpuMI CCSGG 1 cut(s) 582
Bsa29I ATCGAT 1 cut(s) 262
BsaBI GATNNNNATC 1 cut(s) 1038
BsaJI CCNNGG 2 cut(s) 100, 228
BsaWI WCCGGW 1 cut(s) 834
BsaXI ACNNNNNCTCC 2 cut(s) 7, 37
Bsc4I CCNNNNNNNGG 3 cut(s) 450, 471, 970
Bse118I RCCGGY 1 cut(s) 834
Bse1I ACTGG 2 cut(s) 447, 504
Bse3DI GCAATG 1 cut(s) 277
Bse8I GATNNNNATC 1 cut(s) 1038
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 2 cut(s) 100, 228
BseGI GGATG 2 cut(s) 253, 1039
BseJI GATNNNNATC 1 cut(s) 1038
BseLI CCNNNNNNNGG 3 cut(s) 450, 471, 970
BseMI GCAATG 1 cut(s) 277
BseMII CTCAG 1 cut(s) 802
BseNI ACTGG 2 cut(s) 447, 504
BseRI GAGGAG 1 cut(s) 858
BseXI GCAGC 3 cut(s) 558, 1075, 1130
Bsh1236I CGCG 1 cut(s) 616
BshFI GGCC 3 cut(s) 122, 475, 786
BshTI ACCGGT 1 cut(s) 834
BshVI ATCGAT 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 522
BsiHKCI CYCGRG 2 cut(s) 543, 666
BsiSI CCGG 2 cut(s) 582, 835
BslFI GGGAC 2 cut(s) 84, 740
BslI CCNNNNNNNGG 3 cut(s) 450, 471, 970
BsmAI GTCTC 2 cut(s) 25, 137
BsmFI GGGAC 2 cut(s) 84, 740
BsnI GGCC 3 cut(s) 122, 475, 786
BsoBI CYCGRG 2 cut(s) 543, 666
Bsp1286I GDGCHC 1 cut(s) 522
Bsp143I GATC 8 cut(s) 112, 259, 325, 577, 684, 764, 925, 1093
Bsp1720I GCTNAGC 1 cut(s) 567
BspACI CCGC 1 cut(s) 1058
BspANI GGCC 3 cut(s) 122, 475, 786
BspCNI CTCAG 1 cut(s) 801
BspDI ATCGAT 1 cut(s) 262
BspFNI CGCG 1 cut(s) 616
BspPI GGATC 4 cut(s) 572, 679, 933, 1088
BspTI CTTAAG 2 cut(s) 131, 965
BsrDI GCAATG 1 cut(s) 277
BsrFI RCCGGY 1 cut(s) 834
BsrI ACTGG 2 cut(s) 447, 504
BssAI RCCGGY 1 cut(s) 834
BssECI CCNNGG 2 cut(s) 100, 228
BssMI GATC 8 cut(s) 112, 259, 325, 577, 684, 764, 925, 1093
BssT1I CCWWGG 2 cut(s) 100, 228
Bst4CI ACNGT 3 cut(s) 19, 95, 989
BstAFI CTTAAG 2 cut(s) 131, 965
BstAPI GCANNNNNTGC 1 cut(s) 176
BstC8I GCNNGC 2 cut(s) 501, 663
BstDEI CTNAG 3 cut(s) 139, 567, 788
BstENI CCTNNNNNAGG 1 cut(s) 968
BstF5I GGATG 2 cut(s) 253, 1039
BstFNI CGCG 1 cut(s) 616
BstH2I RGCGCY 1 cut(s) 1074
BstHHI GCGC 2 cut(s) 556, 1073
BstKTI GATC 8 cut(s) 115, 262, 328, 580, 687, 767, 928, 1096
BstMAI GTCTC 2 cut(s) 25, 137
BstMBI GATC 8 cut(s) 112, 259, 325, 577, 684, 764, 925, 1093
BstMWI GCNNNNNNNGC 2 cut(s) 176, 854
BstNSI RCATGY 1 cut(s) 1112
BstSCI CCNGG 1 cut(s) 580
BstUI CGCG 1 cut(s) 616
BstV1I GCAGC 3 cut(s) 558, 1075, 1130
BstV2I GAAGAC 2 cut(s) 192, 824
BstX2I RGATCY 2 cut(s) 764, 925
BstYI RGATCY 2 cut(s) 764, 925
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 3 cut(s) 122, 475, 786
BsuTUI ATCGAT 1 cut(s) 262
BtsCI GGATG 2 cut(s) 253, 1039
BtsIMutI CAGTG 2 cut(s) 100, 243
Cac8I GCNNGC 2 cut(s) 501, 663
CfoI GCGC 2 cut(s) 556, 1073
Cfr10I RCCGGY 1 cut(s) 834
Cfr13I GGNCC 1 cut(s) 120
ClaI ATCGAT 1 cut(s) 262
Csp6I GTAC 3 cut(s) 540, 863, 1194
CspAI ACCGGT 1 cut(s) 834
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 3 cut(s) 196, 1007, 1109
CviQI GTAC 3 cut(s) 540, 863, 1194
DdeI CTNAG 3 cut(s) 139, 567, 788
DpnI GATC 8 cut(s) 114, 261, 327, 579, 686, 766, 927, 1095
DpnII GATC 8 cut(s) 112, 259, 325, 577, 684, 764, 925, 1093
DraIII CACNNNGTG 1 cut(s) 436
EciI GGCGGA 1 cut(s) 1073
Ecl136II GAGCTC 1 cut(s) 520
Eco130I CCWWGG 2 cut(s) 100, 228
Eco147I AGGCCT 1 cut(s) 475
Eco24I GRGCYC 1 cut(s) 522
Eco53kI GAGCTC 1 cut(s) 520
Eco57I CTGAAG 1 cut(s) 1245
Eco88I CYCGRG 2 cut(s) 543, 666
EcoICRI GAGCTC 1 cut(s) 520
EcoNI CCTNNNNNAGG 1 cut(s) 968
EcoT14I CCWWGG 2 cut(s) 100, 228
EcoT38I GRGCYC 1 cut(s) 522
ErhI CCWWGG 2 cut(s) 100, 228
FaeI CATG 3 cut(s) 199, 1010, 1112
FalI AAGNNNNNCTT 4 cut(s) 163, 195, 962, 994
FaqI GGGAC 2 cut(s) 84, 740
FatI CATG 3 cut(s) 195, 1006, 1108
Fnu4HI GCNGC 3 cut(s) 572, 1064, 1119
FokI GGATG 2 cut(s) 260, 1026
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 3 cut(s) 572, 1064, 1119
FspBI CTAG 8 cut(s) 101, 110, 282, 329, 650, 747, 768, 1067
GlaI GCGC 2 cut(s) 555, 1072
GluI GCNGC 3 cut(s) 572, 1064, 1119
HaeII RGCGCY 1 cut(s) 1074
HaeIII GGCC 3 cut(s) 122, 475, 786
HapII CCGG 2 cut(s) 582, 835
HhaI GCGC 2 cut(s) 556, 1073
Hin1II CATG 3 cut(s) 199, 1010, 1112
Hin6I GCGC 2 cut(s) 554, 1071
HinP1I GCGC 2 cut(s) 554, 1071
HinfI GANTC 6 cut(s) 83, 606, 646, 671, 1177, 1189
HpaII CCGG 2 cut(s) 582, 835
HphI GGTGA 2 cut(s) 363, 1186
Hpy166II GTNNAC 4 cut(s) 430, 439, 711, 800
Hpy188I TCNGA 3 cut(s) 27, 88, 811
Hpy188III TCNNGA 8 cut(s) 64, 323, 329, 391, 545, 650, 955, 979
Hpy8I GTNNAC 4 cut(s) 430, 439, 711, 800
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 3 cut(s) 964, 976, 1154
HpyCH4III ACNGT 3 cut(s) 19, 95, 989
HpyCH4V TGCA 5 cut(s) 421, 499, 857, 1118, 1199
HpyF10VI GCNNNNNNNGC 2 cut(s) 176, 854
HpyF3I CTNAG 3 cut(s) 139, 567, 788
Hsp92II CATG 3 cut(s) 199, 1010, 1112
HspAI GCGC 2 cut(s) 554, 1071
Kzo9I GATC 8 cut(s) 112, 259, 325, 577, 684, 764, 925, 1093
LmnI GCTCC 2 cut(s) 845, 1060
Lsp1109I GCAGC 3 cut(s) 558, 1075, 1130
LweI GCATC 1 cut(s) 732
MaeI CTAG 8 cut(s) 101, 110, 282, 329, 650, 747, 768, 1067
MaeIII GTNAC 4 cut(s) 95, 369, 912, 1102
MalI GATC 8 cut(s) 114, 261, 327, 579, 686, 766, 927, 1095
MboI GATC 8 cut(s) 112, 259, 325, 577, 684, 764, 925, 1093
MboII GAAGA 5 cut(s) 192, 392, 829, 1063, 1238
MflI RGATCY 2 cut(s) 764, 925
MhlI GDGCHC 1 cut(s) 522
MluCI AATT 7 cut(s) 156, 255, 286, 827, 993, 1201, 1231
MlyI GAGTC 2 cut(s) 615, 655
MmeI TCCRAC 1 cut(s) 60
MseI TTAA 4 cut(s) 132, 900, 966, 1155
MslI CAYNNNNRTG 1 cut(s) 1109
MspCI CTTAAG 2 cut(s) 131, 965
MspI CCGG 2 cut(s) 582, 835
MspR9I CCNGG 1 cut(s) 582
MvnI CGCG 1 cut(s) 616
MwoI GCNNNNNNNGC 2 cut(s) 176, 854
NciI CCSGG 1 cut(s) 582
NdeII GATC 8 cut(s) 112, 259, 325, 577, 684, 764, 925, 1093
NlaIII CATG 3 cut(s) 199, 1010, 1112
NmuCI GTSAC 3 cut(s) 95, 369, 1102
NspI RCATGY 1 cut(s) 1112
OliI CACNNNNGTG 1 cut(s) 1109
PaeR7I CTCGAG 1 cut(s) 543
PceI AGGCCT 1 cut(s) 475
PciI ACATGT 1 cut(s) 1108
PfeI GAWTC 4 cut(s) 83, 671, 1177, 1189
PfoI TCCNGGA 1 cut(s) 580
PinAI ACCGGT 1 cut(s) 834
PkrI GCNGC 3 cut(s) 573, 1065, 1120
PleI GAGTC 2 cut(s) 614, 654
PpsI GAGTC 2 cut(s) 614, 654
PscI ACATGT 1 cut(s) 1108
Psp124BI GAGCTC 1 cut(s) 522
PspPI GGNCC 1 cut(s) 120
PsuI RGATCY 2 cut(s) 764, 925
RsaI GTAC 3 cut(s) 541, 864, 1195
RsaNI GTAC 3 cut(s) 540, 863, 1194
RseI CAYNNNNRTG 1 cut(s) 1109
SacI GAGCTC 1 cut(s) 522
SaqAI TTAA 4 cut(s) 132, 900, 966, 1155
SatI GCNGC 3 cut(s) 572, 1064, 1119
Sau3AI GATC 8 cut(s) 112, 259, 325, 577, 684, 764, 925, 1093
Sau96I GGNCC 1 cut(s) 120
SchI GAGTC 2 cut(s) 615, 655
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 1 cut(s) 522
SfaNI GCATC 1 cut(s) 732
Sfr274I CTCGAG 1 cut(s) 543
SlaI CTCGAG 1 cut(s) 543
SmiMI CAYNNNNRTG 1 cut(s) 1109
SmlI CTYRAG 6 cut(s) 62, 131, 204, 389, 543, 965
SmoI CTYRAG 6 cut(s) 62, 131, 204, 389, 543, 965
Sse9I AATT 7 cut(s) 156, 255, 286, 827, 993, 1201, 1231
SseBI AGGCCT 1 cut(s) 475
SsiI CCGC 1 cut(s) 1058
SspI AATATT 1 cut(s) 40
SspMI CTAG 8 cut(s) 101, 110, 282, 329, 650, 747, 768, 1067
SstI GAGCTC 1 cut(s) 522
StuI AGGCCT 1 cut(s) 475
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 2 cut(s) 100, 228
TaaI ACNGT 3 cut(s) 19, 95, 989
TaqI TCGA 8 cut(s) 262, 544, 558, 604, 933, 1026, 1092, 1129
TaqII GACCGA 1 cut(s) 836
TasI AATT 7 cut(s) 156, 255, 286, 827, 993, 1201, 1231
TatI WGTACW 1 cut(s) 862
TfiI GAWTC 4 cut(s) 83, 671, 1177, 1189
Tru1I TTAA 4 cut(s) 132, 900, 966, 1155
Tru9I TTAA 4 cut(s) 132, 900, 966, 1155
TscAI CASTG 2 cut(s) 100, 243
TseFI GTSAC 3 cut(s) 95, 369, 1102
TseI GCWGC 3 cut(s) 571, 1063, 1118
Tsp45I GTSAC 3 cut(s) 95, 369, 1102
TspDTI ATGAA 5 cut(s) 201, 288, 302, 840, 918
TspRI CASTG 2 cut(s) 100, 243
Vha464I CTTAAG 2 cut(s) 131, 965
XagI CCTNNNNNAGG 1 cut(s) 968
XapI RAATTY 4 cut(s) 156, 286, 827, 1201
XbaI TCTAGA 2 cut(s) 328, 649
XceI RCATGY 1 cut(s) 1112
XcmI CCANNNNNNNNNTGG 1 cut(s) 532
XhoI CTCGAG 1 cut(s) 543
XmaJI CCTAGG 1 cut(s) 100
XspI CTAG 8 cut(s) 101, 110, 282, 329, 650, 747, 768, 1067
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.