Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD05G1156900.v1.1 |
| prunus_persica | Prupe.8G189000_v2.0.a1 Prupe.8G189000_v2.0.a1 |
| pyrus_communis | pycom05g14950 |
| rosa_chinensis | RchiOBHm_Chr6g0282631 |
| rosa_laevigata | RLG00000012879 |
| rosa_rugosa | Rorug06G0148000 Rorug06G0148100 |
| rosa_samantha | Rh6AG261400 Rh6BG264500 Rh6CG263700 Rh6DG255900 |
| rosa_wichuraiana | Rw6G022600 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 972 |
| Acc65I | GGTACC | 1 cut(s) | 955 |
| AccB1I | GGYRCC | 2 cut(s) | 955, 1071 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 185 |
| AccI | GTMKAC | 1 cut(s) | 414 |
| AccII | CGCG | 1 cut(s) | 1622 |
| AciI | CCGC | 2 cut(s) | 1309, 1996 |
| AcoI | YGGCCR | 3 cut(s) | 728, 1981, 2350 |
| AcsI | RAATTY | 6 cut(s) | 369, 436, 570, 1007, 1040, 1968 |
| AcuI | CTGAAG | 1 cut(s) | 2073 |
| AcyI | GRCGYC | 1 cut(s) | 1072 |
| AfaI | GTAC | 8 cut(s) | 55, 166, 736, 957, 1407, 2137, 2274, 2474 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 185, 296, 614, 641, 674, 1344, 1885, 2168 |
| AflIII | ACRYGT | 1 cut(s) | 2223 |
| AgsI | TTSAA | 9 cut(s) | 424, 813, 1006, 1327, 1361, 1606, 2363, 2371, 2495 |
| AjnI | CCWGG | 9 cut(s) | 21, 304, 744, 816, 1113, 1206, 1372, 1830, 1878 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2142, 2174 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 758, 790 |
| Alw21I | GWGCWC | 3 cut(s) | 313, 1157, 1182 |
| Alw26I | GTCTC | 2 cut(s) | 625, 1997 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1825 |
| Ama87I | CYCGRG | 1 cut(s) | 49 |
| AoxI | GGCC | 7 cut(s) | 728, 1192, 1346, 1779, 1981, 2308, 2350 |
| ApeKI | GCWGC | 8 cut(s) | 13, 359, 723, 821, 1433, 1436, 1702, 2508 |
| ApoI | RAATTY | 6 cut(s) | 369, 436, 570, 1007, 1040, 1968 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 853 |
| Asp718I | GGTACC | 1 cut(s) | 955 |
| AspLEI | GCGC | 3 cut(s) | 912, 1074, 1850 |
| AspS9I | GGNCC | 4 cut(s) | 617, 1780, 2035, 2308 |
| AsuC2I | CCSGG | 1 cut(s) | 764 |
| AsuHPI | GGTGA | 6 cut(s) | 260, 614, 1235, 1371, 1439, 2000 |
| AsuII | TTCGAA | 2 cut(s) | 1972, 2383 |
| AvaI | CYCGRG | 1 cut(s) | 49 |
| AvaII | GGWCC | 2 cut(s) | 617, 2035 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1279, 1312 |
| BalI | TGGCCA | 2 cut(s) | 1983, 2352 |
| BamHI | GGATCC | 1 cut(s) | 2200 |
| BanI | GGYRCC | 2 cut(s) | 955, 1071 |
| BanII | GRGCYC | 2 cut(s) | 313, 1157 |
| BbsI | GAAGAC | 1 cut(s) | 1561 |
| Bbv12I | GWGCWC | 3 cut(s) | 313, 1157, 1182 |
| BbvI | GCAGC | 8 cut(s) | 25, 371, 735, 833, 1445, 1448, 1714, 2520 |
| BccI | CCATC | 4 cut(s) | 1136, 1184, 1847, 1883 |
| BceAI | ACGGC | 1 cut(s) | 1519 |
| BciT130I | CCWGG | 9 cut(s) | 23, 306, 746, 818, 1115, 1208, 1374, 1832, 1880 |
| BciVI | GTATCC | 1 cut(s) | 1221 |
| BcnI | CCSGG | 1 cut(s) | 764 |
| BcoDI | GTCTC | 2 cut(s) | 625, 1997 |
| BfoI | RGCGCY | 2 cut(s) | 913, 1075 |
| BfuI | GTATCC | 1 cut(s) | 1221 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1880 |
| BglII | AGATCT | 1 cut(s) | 1934 |
| BisI | GCNGC | 8 cut(s) | 14, 360, 724, 822, 1434, 1437, 1703, 2509 |
| BlpI | GCTNAGC | 1 cut(s) | 1713 |
| BlsI | GCNGC | 8 cut(s) | 15, 361, 725, 823, 1435, 1438, 1704, 2510 |
| BmcAI | AGTACT | 1 cut(s) | 55 |
| Bme18I | GGWCC | 2 cut(s) | 617, 2035 |
| BmeT110I | CYCGRG | 1 cut(s) | 49 |
| BmgT120I | GGNCC | 4 cut(s) | 617, 1780, 2035, 2308 |
| BmiI | GGNNCC | 4 cut(s) | 856, 957, 1073, 2202 |
| BmrI | ACTGGG | 1 cut(s) | 1821 |
| BmsI | GCATC | 5 cut(s) | 1560, 1582, 1912, 2081, 2410 |
| BmuI | ACTGGG | 1 cut(s) | 1821 |
| BpiI | GAAGAC | 1 cut(s) | 1561 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2261, 2293 |
| BpmI | CTGGAG | 4 cut(s) | 288, 1136, 1243, 1677 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1343, 1455 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1713 |
| Bpu14I | TTCGAA | 2 cut(s) | 1972, 2383 |
| BpuEI | CTTGAG | 5 cut(s) | 550, 863, 887, 1288, 1880 |
| BpuMI | CCSGG | 1 cut(s) | 764 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1232 |
| BsaHI | GRCGYC | 1 cut(s) | 1072 |
| BsaI | GGTCTC | 1 cut(s) | 625 |
| BsaJI | CCNNGG | 6 cut(s) | 22, 762, 1113, 1206, 1984, 2499 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 300, 330 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 185, 296, 614, 641, 674, 1344, 1885, 2168 |
| Bse118I | RCCGGY | 1 cut(s) | 726 |
| Bse1I | ACTGG | 7 cut(s) | 190, 391, 688, 1226, 1500, 1635, 1816 |
| Bse3DI | GCAATG | 3 cut(s) | 706, 1218, 1542 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1232 |
| BseBI | CCWGG | 9 cut(s) | 23, 306, 746, 818, 1115, 1208, 1374, 1832, 1880 |
| BseDI | CCNNGG | 6 cut(s) | 22, 762, 1113, 1206, 1984, 2499 |
| BseGI | GGATG | 5 cut(s) | 387, 772, 1060, 1573, 1875 |
| BseJI | GATNNNNATC | 1 cut(s) | 1232 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 185, 296, 614, 641, 674, 1344, 1885, 2168 |
| BseMI | GCAATG | 3 cut(s) | 706, 1218, 1542 |
| BseMII | CTCAG | 5 cut(s) | 497, 708, 786, 1704, 2178 |
| BseNI | ACTGG | 7 cut(s) | 190, 391, 688, 1226, 1500, 1635, 1816 |
| BseXI | GCAGC | 8 cut(s) | 25, 371, 735, 833, 1445, 1448, 1714, 2520 |
| Bsh1236I | CGCG | 1 cut(s) | 1622 |
| BshFI | GGCC | 7 cut(s) | 730, 1194, 1348, 1781, 1983, 2310, 2352 |
| BshNI | GGYRCC | 2 cut(s) | 955, 1071 |
| BsiHKAI | GWGCWC | 3 cut(s) | 313, 1157, 1182 |
| BsiHKCI | CYCGRG | 1 cut(s) | 49 |
| BsiSI | CCGG | 2 cut(s) | 727, 764 |
| BslFI | GGGAC | 1 cut(s) | 313 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 185, 296, 614, 641, 674, 1344, 1885, 2168 |
| BsmAI | GTCTC | 2 cut(s) | 625, 1997 |
| BsmFI | GGGAC | 1 cut(s) | 313 |
| BsmI | GAATGC | 2 cut(s) | 1630, 2419 |
| BsnI | GGCC | 7 cut(s) | 730, 1194, 1348, 1781, 1983, 2310, 2352 |
| Bso31I | GGTCTC | 1 cut(s) | 625 |
| BsoBI | CYCGRG | 1 cut(s) | 49 |
| Bsp119I | TTCGAA | 2 cut(s) | 1972, 2383 |
| Bsp1286I | GDGCHC | 3 cut(s) | 313, 1157, 1182 |
| Bsp1407I | TGTACA | 1 cut(s) | 164 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1713 |
| BspACI | CCGC | 2 cut(s) | 1309, 1996 |
| BspANI | GGCC | 7 cut(s) | 730, 1194, 1348, 1781, 1983, 2310, 2352 |
| BspCNI | CTCAG | 5 cut(s) | 498, 709, 787, 1705, 2179 |
| BspFNI | CGCG | 1 cut(s) | 1622 |
| BspHI | TCATGA | 1 cut(s) | 498 |
| BspLI | GGNNCC | 4 cut(s) | 856, 957, 1073, 2202 |
| BspQI | GCTCTTC | 1 cut(s) | 1913 |
| BspT104I | TTCGAA | 2 cut(s) | 1972, 2383 |
| BspT107I | GGYRCC | 2 cut(s) | 955, 1071 |
| BspTNI | GGTCTC | 1 cut(s) | 625 |
| BsrDI | GCAATG | 3 cut(s) | 706, 1218, 1542 |
| BsrFI | RCCGGY | 1 cut(s) | 726 |
| BsrGI | TGTACA | 1 cut(s) | 164 |
| BsrI | ACTGG | 7 cut(s) | 190, 391, 688, 1226, 1500, 1635, 1816 |
| BssAI | RCCGGY | 1 cut(s) | 726 |
| BssECI | CCNNGG | 6 cut(s) | 22, 762, 1113, 1206, 1984, 2499 |
| BssNAI | GTATAC | 1 cut(s) | 415 |
| BssNI | GRCGYC | 1 cut(s) | 1072 |
| BssT1I | CCWWGG | 1 cut(s) | 2499 |
| Bst1107I | GTATAC | 1 cut(s) | 415 |
| Bst2UI | CCWGG | 9 cut(s) | 23, 306, 746, 818, 1115, 1208, 1374, 1832, 1880 |
| Bst4CI | ACNGT | 5 cut(s) | 380, 401, 1201, 1443, 1988 |
| Bst6I | CTCTTC | 4 cut(s) | 1056, 1322, 1913, 2337 |
| BstACI | GRCGYC | 1 cut(s) | 1072 |
| BstAUI | TGTACA | 1 cut(s) | 164 |
| BstBI | TTCGAA | 2 cut(s) | 1972, 2383 |
| BstC8I | GCNNGC | 7 cut(s) | 38, 210, 728, 1083, 1620, 1746, 1904 |
| BstDEI | CTNAG | 9 cut(s) | 506, 717, 795, 1343, 1364, 1455, 1562, 1713, 2187 |
| BstDSI | CCRYGG | 1 cut(s) | 1984 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 612, 672 |
| BstF5I | GGATG | 5 cut(s) | 387, 772, 1060, 1573, 1875 |
| BstFNI | CGCG | 1 cut(s) | 1622 |
| BstH2I | RGCGCY | 2 cut(s) | 913, 1075 |
| BstHHI | GCGC | 3 cut(s) | 912, 1074, 1850 |
| BstMAI | GTCTC | 2 cut(s) | 625, 1997 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 10, 69, 696, 1078, 1466, 1754, 1880, 1922, 2084 |
| BstNI | CCWGG | 9 cut(s) | 23, 306, 746, 818, 1115, 1208, 1374, 1832, 1880 |
| BstNSI | RCATGY | 6 cut(s) | 890, 989, 1523, 1906, 2227, 2467 |
| BstUI | CGCG | 1 cut(s) | 1622 |
| BstV1I | GCAGC | 8 cut(s) | 25, 371, 735, 833, 1445, 1448, 1714, 2520 |
| BstV2I | GAAGAC | 1 cut(s) | 1561 |
| BstX2I | RGATCY | 4 cut(s) | 706, 1594, 1934, 2200 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 745, 1584 |
| BstYI | RGATCY | 4 cut(s) | 706, 1594, 1934, 2200 |
| BstZ17I | GTATAC | 1 cut(s) | 415 |
| BsuI | GTATCC | 1 cut(s) | 1221 |
| BsuRI | GGCC | 7 cut(s) | 730, 1194, 1348, 1781, 1983, 2310, 2352 |
| BtgI | CCRYGG | 1 cut(s) | 1984 |
| BtsCI | GGATG | 5 cut(s) | 387, 772, 1060, 1573, 1875 |
| BtsI | GCAGTG | 1 cut(s) | 1530 |
| BtsIMutI | CAGTG | 4 cut(s) | 1439, 1530, 1628, 2097 |
| Cac8I | GCNNGC | 7 cut(s) | 38, 210, 728, 1083, 1620, 1746, 1904 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1825 |
| CciI | TCATGA | 1 cut(s) | 498 |
| CfoI | GCGC | 3 cut(s) | 912, 1074, 1850 |
| Cfr10I | RCCGGY | 1 cut(s) | 726 |
| Cfr13I | GGNCC | 4 cut(s) | 617, 1780, 2035, 2308 |
| Csp6I | GTAC | 8 cut(s) | 54, 165, 735, 956, 1406, 2136, 2273, 2473 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1940, 1975 |
| CviQI | GTAC | 8 cut(s) | 54, 165, 735, 956, 1406, 2136, 2273, 2473 |
| DdeI | CTNAG | 9 cut(s) | 506, 717, 795, 1343, 1364, 1455, 1562, 1713, 2187 |
| DinI | GGCGCC | 1 cut(s) | 1073 |
| EaeI | YGGCCR | 3 cut(s) | 728, 1981, 2350 |
| Eam1104I | CTCTTC | 4 cut(s) | 1056, 1322, 1913, 2337 |
| EarI | CTCTTC | 4 cut(s) | 1056, 1322, 1913, 2337 |
| Ecl136II | GAGCTC | 2 cut(s) | 311, 1155 |
| Eco130I | CCWWGG | 1 cut(s) | 2499 |
| Eco24I | GRGCYC | 2 cut(s) | 313, 1157 |
| Eco31I | GGTCTC | 1 cut(s) | 625 |
| Eco47I | GGWCC | 2 cut(s) | 617, 2035 |
| Eco53kI | GAGCTC | 2 cut(s) | 311, 1155 |
| Eco57I | CTGAAG | 1 cut(s) | 2073 |
| Eco88I | CYCGRG | 1 cut(s) | 49 |
| EcoICRI | GAGCTC | 2 cut(s) | 311, 1155 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 612, 672 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2035 |
| EcoRII | CCWGG | 9 cut(s) | 21, 304, 744, 816, 1113, 1206, 1372, 1830, 1878 |
| EcoT14I | CCWWGG | 1 cut(s) | 2499 |
| EcoT22I | ATGCAT | 2 cut(s) | 1575, 2113 |
| EcoT38I | GRGCYC | 2 cut(s) | 313, 1157 |
| EgeI | GGCGCC | 1 cut(s) | 1073 |
| EheI | GGCGCC | 1 cut(s) | 1073 |
| ErhI | CCWWGG | 1 cut(s) | 2499 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 986, 1018, 2234, 2266 |
| FaqI | GGGAC | 1 cut(s) | 313 |
| FauI | CCCGC | 1 cut(s) | 1316 |
| FauNDI | CATATG | 1 cut(s) | 265 |
| FblI | GTMKAC | 1 cut(s) | 414 |
| Fnu4HI | GCNGC | 8 cut(s) | 14, 360, 724, 822, 1434, 1437, 1703, 2509 |
| FokI | GGATG | 5 cut(s) | 374, 779, 1067, 1560, 1862 |
| FriOI | GRGCYC | 2 cut(s) | 313, 1157 |
| Fsp4HI | GCNGC | 8 cut(s) | 14, 360, 724, 822, 1434, 1437, 1703, 2509 |
| GlaI | GCGC | 3 cut(s) | 911, 1073, 1849 |
| GluI | GCNGC | 8 cut(s) | 14, 360, 724, 822, 1434, 1437, 1703, 2509 |
| GsuI | CTGGAG | 4 cut(s) | 288, 1136, 1243, 1677 |
| HaeII | RGCGCY | 2 cut(s) | 913, 1075 |
| HaeIII | GGCC | 7 cut(s) | 730, 1194, 1348, 1781, 1983, 2310, 2352 |
| HapII | CCGG | 2 cut(s) | 727, 764 |
| HhaI | GCGC | 3 cut(s) | 912, 1074, 1850 |
| Hin1I | GRCGYC | 1 cut(s) | 1072 |
| Hin6I | GCGC | 3 cut(s) | 910, 1072, 1848 |
| HinP1I | GCGC | 3 cut(s) | 910, 1072, 1848 |
| HindIII | AAGCTT | 2 cut(s) | 2046, 2426 |
| HpaII | CCGG | 2 cut(s) | 727, 764 |
| HphI | GGTGA | 6 cut(s) | 260, 614, 1235, 1371, 1439, 2000 |
| Hpy166II | GTNNAC | 2 cut(s) | 415, 2095 |
| Hpy188I | TCNGA | 9 cut(s) | 153, 375, 384, 447, 796, 1638, 1939, 1966, 2293 |
| Hpy8I | GTNNAC | 2 cut(s) | 415, 2095 |
| Hpy99I | CGWCG | 1 cut(s) | 1292 |
| HpyAV | CCTTC | 8 cut(s) | 702, 1045, 1273, 1760, 2026, 2090, 2162, 2512 |
| HpyCH4III | ACNGT | 5 cut(s) | 380, 401, 1201, 1443, 1988 |
| HpyCH4IV | ACGT | 2 cut(s) | 223, 1290 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 10, 69, 696, 1078, 1466, 1754, 1880, 1922, 2084 |
| HpyF3I | CTNAG | 9 cut(s) | 506, 717, 795, 1343, 1364, 1455, 1562, 1713, 2187 |
| HpySE526I | ACGT | 2 cut(s) | 223, 1290 |
| Hsp92I | GRCGYC | 1 cut(s) | 1072 |
| HspAI | GCGC | 3 cut(s) | 910, 1072, 1848 |
| KasI | GGCGCC | 1 cut(s) | 1071 |
| KpnI | GGTACC | 1 cut(s) | 959 |
| KroI | GCCGGC | 1 cut(s) | 726 |
| KroNI | GCCGGC | 1 cut(s) | 728 |
| LguI | GCTCTTC | 1 cut(s) | 1913 |
| LmnI | GCTCC | 3 cut(s) | 308, 1145, 1638 |
| Lsp1109I | GCAGC | 8 cut(s) | 25, 371, 735, 833, 1445, 1448, 1714, 2520 |
| LweI | GCATC | 5 cut(s) | 1560, 1582, 1912, 2081, 2410 |
| MaeII | ACGT | 2 cut(s) | 223, 1290 |
| MaeIII | GTNAC | 2 cut(s) | 401, 1888 |
| MfeI | CAATTG | 1 cut(s) | 1356 |
| MflI | RGATCY | 4 cut(s) | 706, 1594, 1934, 2200 |
| MhlI | GDGCHC | 3 cut(s) | 313, 1157, 1182 |
| MlsI | TGGCCA | 2 cut(s) | 1983, 2352 |
| MluCI | AATT | 9 cut(s) | 369, 436, 570, 808, 1007, 1040, 1356, 1968, 2400 |
| MluNI | TGGCCA | 2 cut(s) | 1983, 2352 |
| Mly113I | GGCGCC | 1 cut(s) | 1072 |
| MlyI | GAGTC | 3 cut(s) | 295, 878, 1472 |
| Mox20I | TGGCCA | 2 cut(s) | 1983, 2352 |
| Mph1103I | ATGCAT | 2 cut(s) | 1575, 2113 |
| MroNI | GCCGGC | 1 cut(s) | 726 |
| MroXI | GAANNNNTTC | 1 cut(s) | 853 |
| MscI | TGGCCA | 2 cut(s) | 1983, 2352 |
| MseI | TTAA | 5 cut(s) | 1092, 1473, 1650, 1767, 2430 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1518, 1623 |
| Msp20I | TGGCCA | 2 cut(s) | 1983, 2352 |
| MspA1I | CMGCKG | 2 cut(s) | 362, 1712 |
| MspI | CCGG | 2 cut(s) | 727, 764 |
| MunI | CAATTG | 1 cut(s) | 1356 |
| Mva1269I | GAATGC | 2 cut(s) | 1630, 2419 |
| MvaI | CCWGG | 9 cut(s) | 23, 306, 746, 818, 1115, 1208, 1374, 1832, 1880 |
| MvnI | CGCG | 1 cut(s) | 1622 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 10, 69, 696, 1078, 1466, 1754, 1880, 1922, 2084 |
| NaeI | GCCGGC | 1 cut(s) | 728 |
| NarI | GGCGCC | 1 cut(s) | 1072 |
| NciI | CCSGG | 1 cut(s) | 764 |
| NdeI | CATATG | 1 cut(s) | 265 |
| NgoMIV | GCCGGC | 1 cut(s) | 726 |
| NlaIV | GGNNCC | 4 cut(s) | 856, 957, 1073, 2202 |
| NsiI | ATGCAT | 2 cut(s) | 1575, 2113 |
| NspI | RCATGY | 6 cut(s) | 890, 989, 1523, 1906, 2227, 2467 |
| NspV | TTCGAA | 2 cut(s) | 1972, 2383 |
| PaeI | GCATGC | 1 cut(s) | 1906 |
| PaeR7I | CTCGAG | 1 cut(s) | 49 |
| PagI | TCATGA | 1 cut(s) | 498 |
| PciI | ACATGT | 1 cut(s) | 2223 |
| PciSI | GCTCTTC | 1 cut(s) | 1913 |
| PctI | GAATGC | 2 cut(s) | 1630, 2419 |
| PdiI | GCCGGC | 1 cut(s) | 728 |
| PdmI | GAANNNNTTC | 1 cut(s) | 853 |
| PfeI | GAWTC | 7 cut(s) | 342, 1275, 1334, 1662, 1816, 2495, 2524 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 185 |
| PfoI | TCCNGGA | 2 cut(s) | 304, 1830 |
| PkrI | GCNGC | 8 cut(s) | 15, 361, 725, 823, 1435, 1438, 1704, 2510 |
| PleI | GAGTC | 3 cut(s) | 295, 877, 1472 |
| PluTI | GGCGCC | 1 cut(s) | 1075 |
| PpsI | GAGTC | 3 cut(s) | 295, 877, 1472 |
| PpuMI | RGGWCCY | 1 cut(s) | 2035 |
| PscI | ACATGT | 1 cut(s) | 2223 |
| PsiI | TTATAA | 1 cut(s) | 972 |
| Psp124BI | GAGCTC | 2 cut(s) | 313, 1157 |
| Psp5II | RGGWCCY | 1 cut(s) | 2035 |
| Psp6I | CCWGG | 9 cut(s) | 21, 304, 744, 816, 1113, 1206, 1372, 1830, 1878 |
| PspGI | CCWGG | 9 cut(s) | 21, 304, 744, 816, 1113, 1206, 1372, 1830, 1878 |
| PspN4I | GGNNCC | 4 cut(s) | 856, 957, 1073, 2202 |
| PspPI | GGNCC | 4 cut(s) | 617, 1780, 2035, 2308 |
| PspPPI | RGGWCCY | 1 cut(s) | 2035 |
| PspXI | VCTCGAGB | 1 cut(s) | 49 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1825 |
| PsuI | RGATCY | 4 cut(s) | 706, 1594, 1934, 2200 |
| PvuII | CAGCTG | 2 cut(s) | 362, 1712 |
| RsaI | GTAC | 8 cut(s) | 55, 166, 736, 957, 1407, 2137, 2274, 2474 |
| RsaNI | GTAC | 8 cut(s) | 54, 165, 735, 956, 1406, 2136, 2273, 2473 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1518, 1623 |
| SacI | GAGCTC | 2 cut(s) | 313, 1157 |
| SapI | GCTCTTC | 1 cut(s) | 1913 |
| SaqAI | TTAA | 5 cut(s) | 1092, 1473, 1650, 1767, 2430 |
| SatI | GCNGC | 8 cut(s) | 14, 360, 724, 822, 1434, 1437, 1703, 2509 |
| Sau96I | GGNCC | 4 cut(s) | 617, 1780, 2035, 2308 |
| ScaI | AGTACT | 1 cut(s) | 55 |
| SchI | GAGTC | 3 cut(s) | 295, 878, 1472 |
| SduI | GDGCHC | 3 cut(s) | 313, 1157, 1182 |
| SfaNI | GCATC | 5 cut(s) | 1560, 1582, 1912, 2081, 2410 |
| SfoI | GGCGCC | 1 cut(s) | 1073 |
| Sfr274I | CTCGAG | 1 cut(s) | 49 |
| SfuI | TTCGAA | 2 cut(s) | 1972, 2383 |
| SinI | GGWCC | 2 cut(s) | 617, 2035 |
| SlaI | CTCGAG | 1 cut(s) | 49 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1518, 1623 |
| SmlI | CTYRAG | 6 cut(s) | 49, 529, 842, 866, 1267, 1859 |
| SmoI | CTYRAG | 6 cut(s) | 49, 529, 842, 866, 1267, 1859 |
| SphI | GCATGC | 1 cut(s) | 1906 |
| Sse9I | AATT | 9 cut(s) | 369, 436, 570, 808, 1007, 1040, 1356, 1968, 2400 |
| SsiI | CCGC | 2 cut(s) | 1309, 1996 |
| SspDI | GGCGCC | 1 cut(s) | 1071 |
| SstI | GAGCTC | 2 cut(s) | 313, 1157 |
| StyI | CCWWGG | 1 cut(s) | 2499 |
| TaaI | ACNGT | 5 cut(s) | 380, 401, 1201, 1443, 1988 |
| TaiI | ACGT | 2 cut(s) | 226, 1293 |
| TaqI | TCGA | 8 cut(s) | 28, 50, 174, 396, 568, 1530, 1972, 2383 |
| TasI | AATT | 9 cut(s) | 369, 436, 570, 808, 1007, 1040, 1356, 1968, 2400 |
| TatI | WGTACW | 2 cut(s) | 53, 164 |
| TfiI | GAWTC | 7 cut(s) | 342, 1275, 1334, 1662, 1816, 2495, 2524 |
| Tru1I | TTAA | 5 cut(s) | 1092, 1473, 1650, 1767, 2430 |
| Tru9I | TTAA | 5 cut(s) | 1092, 1473, 1650, 1767, 2430 |
| TscAI | CASTG | 4 cut(s) | 1446, 1530, 1635, 2097 |
| TseI | GCWGC | 8 cut(s) | 13, 359, 723, 821, 1433, 1436, 1702, 2508 |
| TspGWI | ACGGA | 1 cut(s) | 2044 |
| TspRI | CASTG | 4 cut(s) | 1446, 1530, 1635, 2097 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 185 |
| VpaK11BI | GGWCC | 2 cut(s) | 617, 2035 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 612, 672 |
| XapI | RAATTY | 6 cut(s) | 369, 436, 570, 1007, 1040, 1968 |
| XceI | RCATGY | 6 cut(s) | 890, 989, 1523, 1906, 2227, 2467 |
| XhoI | CTCGAG | 1 cut(s) | 49 |
| XmiI | GTMKAC | 1 cut(s) | 414 |
| XmnI | GAANNNNTTC | 1 cut(s) | 853 |
| ZrmI | AGTACT | 1 cut(s) | 55 |
| Zsp2I | ATGCAT | 2 cut(s) | 1575, 2113 |