Rorug06G0155100

Xyloglucan glycosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0013542
Physical Location & Seq
Reverse (-)
22226175 .. 22226480
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0155100.1

Sequence Viewer

Length: 306 bp
ATGGGTTTGTCATACATGGTCGGATACAGTGACCATTATCCGCAGCGAATTCACCACCATGGATCTTCTTTACCATCTATCAAGGATCATCCCCAACCCATTGCTTGCAAGGAAGGCTCAGTGTACTTCAATTCGTCAAACCCTAACCCTAATCCCCTTGTGGGAGTCCTGATAGGAGGACCTGGAGAAGATGATGCCTATGAGGATGATCGCGTTGATTTTAGGAAGTCCGAACCGACCACATACATTAATGCACCATTTGTTGGTGTTTTGGCATACTTTGTGGCTAATCCCAGTCCAAACTAG

Protein Analysis

101

Amino Acids

11.06

Weight (kDa)

5.3

Isoelectric Point (pI)

45.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_9 PF00759 1 - 91 9.4e-26 Glycosyl hydrolase family 9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013542)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G07330 AT3G07330
fragaria_vesca FvH4_2g18120
malus_domestica MD05G1166000.v1.1 MD10G1156200.v1.1
prunus_persica Prupe.8G194000_v2.0.a1
pyrus_communis pycom05g15460 pycom10g13440
rosa_chinensis RchiOBHm_Chr6g0283521
rosa_laevigata RLG00000012820
rosa_multiflora Rmu_sc0005719.1_g000002 Rmu_sc0007194.1_g000007
rosa_roxburghii Rroxscaffold_7G00185470
rosa_rugosa Rorug06G0155100
rosa_samantha Rh6AG267300 Rh6BG269800 Rh6CG269600
rosa_wichuraiana Rw6G023140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 263
AccII CGCG 1 cut(s) 213
AciI CCGC 1 cut(s) 41
AclWI GGATC 2 cut(s) 70, 93
AcsI RAATTY 1 cut(s) 48
AfaI GTAC 1 cut(s) 125
AfiI CCNNNNNNNGG 2 cut(s) 161, 263
AgsI TTSAA 1 cut(s) 130
AjnI CCWGG 1 cut(s) 181
AlwI GGATC 2 cut(s) 70, 93
ApeKI GCWGC 1 cut(s) 43
ApoI RAATTY 1 cut(s) 48
AseI ATTAAT 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 179
AsuHPI GGTGA 1 cut(s) 44
AvaII GGWCC 1 cut(s) 179
BbvI GCAGC 1 cut(s) 55
BccI CCATC 1 cut(s) 82
BciT130I CCWGG 1 cut(s) 183
BciVI GTATCC 1 cut(s) 17
BfaI CTAG 1 cut(s) 304
BfuI GTATCC 1 cut(s) 17
BisI GCNGC 1 cut(s) 44
BlsI GCNGC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmrFI CCNGG 1 cut(s) 183
BmrI ACTGGG 1 cut(s) 288
BmsI GCATC 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 204
BsaJI CCNNGG 1 cut(s) 58
Bsc4I CCNNNNNNNGG 2 cut(s) 161, 263
Bse1I ACTGG 1 cut(s) 294
Bse3DI GCAATG 1 cut(s) 99
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 58
BseGI GGATG 2 cut(s) 88, 211
BseLI CCNNNNNNNGG 2 cut(s) 161, 263
BseMI GCAATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 132
BseNI ACTGG 1 cut(s) 294
BseXI GCAGC 1 cut(s) 55
Bsh1236I CGCG 1 cut(s) 213
BslI CCNNNNNNNGG 2 cut(s) 161, 263
Bsp143I GATC 3 cut(s) 62, 85, 208
Bsp19I CCATGG 1 cut(s) 58
BspACI CCGC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 131
BspFNI CGCG 1 cut(s) 213
BspPI GGATC 2 cut(s) 70, 93
BsrDI GCAATG 1 cut(s) 99
BsrI ACTGG 1 cut(s) 294
BssECI CCNNGG 1 cut(s) 58
BssMI GATC 3 cut(s) 62, 85, 208
BssT1I CCWWGG 1 cut(s) 58
Bst2UI CCWGG 1 cut(s) 183
Bst4CI ACNGT 1 cut(s) 29
BstC8I GCNNGC 1 cut(s) 106
BstDEI CTNAG 1 cut(s) 118
BstDSI CCRYGG 1 cut(s) 58
BstF5I GGATG 2 cut(s) 88, 211
BstFNI CGCG 1 cut(s) 213
BstKTI GATC 3 cut(s) 65, 88, 211
BstMBI GATC 3 cut(s) 62, 85, 208
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstNI CCWGG 1 cut(s) 183
BstSCI CCNGG 1 cut(s) 181
BstUI CGCG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 55
BstX2I RGATCY 1 cut(s) 62
BstYI RGATCY 1 cut(s) 62
BsuI GTATCC 1 cut(s) 17
BtgI CCRYGG 1 cut(s) 58
BtsCI GGATG 2 cut(s) 88, 211
BtsIMutI CAGTG 2 cut(s) 34, 126
Cac8I GCNNGC 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 179
Csp6I GTAC 1 cut(s) 124
CviAII CATG 2 cut(s) 16, 59
CviJI RGCY 2 cut(s) 117, 287
CviKI_1 RGCY 2 cut(s) 117, 287
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 118
DpnI GATC 3 cut(s) 64, 87, 210
DpnII GATC 3 cut(s) 62, 85, 208
Eco130I CCWWGG 1 cut(s) 58
Eco47I GGWCC 1 cut(s) 179
EcoO109I RGGNCCY 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 48
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 58
ErhI CCWWGG 1 cut(s) 58
FaeI CATG 2 cut(s) 19, 62
FaiI YATR 6 cut(s) 13, 17, 60, 201, 244, 277
FatI CATG 2 cut(s) 15, 58
Fnu4HI GCNGC 1 cut(s) 44
FokI GGATG 2 cut(s) 75, 218
Fsp4HI GCNGC 1 cut(s) 44
FspBI CTAG 1 cut(s) 304
GluI GCNGC 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 204
Hin1II CATG 2 cut(s) 19, 62
HinfI GANTC 1 cut(s) 165
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 124
Hpy188I TCNGA 2 cut(s) 23, 232
Hpy188III TCNNGA 1 cut(s) 169
Hpy8I GTNNAC 1 cut(s) 124
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 2 cut(s) 108, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 1 cut(s) 118
Hsp92II CATG 2 cut(s) 19, 62
Kzo9I GATC 3 cut(s) 62, 85, 208
LpnPI CCDG 3 cut(s) 168, 182, 195
Lsp1109I GCAGC 1 cut(s) 55
LweI GCATC 1 cut(s) 184
MaeI CTAG 1 cut(s) 304
MaeIII GTNAC 1 cut(s) 29
MalI GATC 3 cut(s) 64, 87, 210
MboI GATC 3 cut(s) 62, 85, 208
MboII GAAGA 2 cut(s) 57, 200
MflI RGATCY 1 cut(s) 62
MluCI AATT 2 cut(s) 48, 130
MlyI GAGTC 1 cut(s) 174
MnlI CCTC 2 cut(s) 170, 196
MseI TTAA 1 cut(s) 249
MslI CAYNNNNRTG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 183
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 213
MwoI GCNNNNNNNGC 1 cut(s) 114
NcoI CCATGG 1 cut(s) 58
NdeII GATC 3 cut(s) 62, 85, 208
NlaIII CATG 2 cut(s) 19, 62
NmuCI GTSAC 1 cut(s) 29
PflMI CCANNNNNTGG 1 cut(s) 263
PkrI GCNGC 1 cut(s) 45
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PpuMI RGGWCCY 1 cut(s) 179
PshBI ATTAAT 1 cut(s) 249
Psp5II RGGWCCY 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 181
PspGI CCWGG 1 cut(s) 181
PspPI GGNCC 1 cut(s) 179
PspPPI RGGWCCY 1 cut(s) 179
PsuI RGATCY 1 cut(s) 62
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 57
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 1 cut(s) 44
Sau3AI GATC 3 cut(s) 62, 85, 208
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 1 cut(s) 174
ScrFI CCNGG 1 cut(s) 183
SetI ASST 1 cut(s) 184
SfaNI GCATC 1 cut(s) 184
SinI GGWCC 1 cut(s) 179
SmiMI CAYNNNNRTG 1 cut(s) 57
Sse9I AATT 2 cut(s) 48, 130
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 304
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 58
TaaI ACNGT 1 cut(s) 29
TasI AATT 2 cut(s) 48, 130
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TscAI CASTG 2 cut(s) 34, 126
TseFI GTSAC 1 cut(s) 29
TseI GCWGC 1 cut(s) 43
Tsp45I GTSAC 1 cut(s) 29
TspRI CASTG 2 cut(s) 34, 126
Van91I CCANNNNNTGG 1 cut(s) 263
VpaK11BI GGWCC 1 cut(s) 179
VspI ATTAAT 1 cut(s) 249
XapI RAATTY 1 cut(s) 48
XspI CTAG 1 cut(s) 304
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.