Rorug06G0179100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0020730
Physical Location & Seq
Reverse (-)
28252379 .. 28252981
603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0179100.1

Sequence Viewer

Length: 552 bp
ATGCTGCAACAGGTATGTTACAGTCCGAGTAATATGCTTGGTGATGTTATTAGTTGGTTGAACCAGTGTGCTAATGAATTATCGTTAATACAATTTGGAGAACTTTTATTCTCGTTATGGGGAATTTGGAAGGAAAGAAATGATCGGGTTTGGAATCAGAAGAGGTGTGAGGCCAGGGATGTGAGTTTGGGGATTGTCTCTAGGCTGCAAGAATTTAGGTTTCACAATTTGAAGCCCTCCCAACCTAAGGTTAAACGTACAGCAGTGTGGGAAGCTCCCCCTGTGGGGTTGGTGAAGATCAATGTTGATGGTGCATTCCATCACGCTACTAGGAAGGGTGGTTTGGGTTTCGTTTTCAGAAATGAGACTGAACATGCTGAAATATTGGCATGCAAGGCTGCTTTAGAGTTTGTGGAGGAGCACGGTTTTAGACCAGTTATTCTGGAGACTAATGCCTTGGAGGTTCAGCGACAACTTTCTTTGCATGATTCTGTTAATTTTTCCTTGCTAGGCAGAATATATGATGATGTGGTAGCTCTCTTAGAGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.87

Weight (kDa)

6.3

Isoelectric Point (pI)

37.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 102 - 182 5.7e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020730)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001317.1_g000011
rosa_rugosa Rorug06G0179000 Rorug06G0179100
rosa_samantha Rh5AG465600 Rh5CG417000 Rh7CG201200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 123, 212
AfaI GTAC 1 cut(s) 259
AfiI CCNNNNNNNGG 3 cut(s) 247, 284, 285
AgsI TTSAA 2 cut(s) 61, 232
AjnI CCWGG 1 cut(s) 173
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 2 cut(s) 275, 536
AluI AGCT 2 cut(s) 275, 536
Alw21I GWGCWC 1 cut(s) 423
Alw26I GTCTC 3 cut(s) 202, 359, 440
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 3 cut(s) 4, 205, 398
ApoI RAATTY 2 cut(s) 123, 212
AsuHPI GGTGA 2 cut(s) 53, 304
AxyI CCTNAGG 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 423
BbvI GCAGC 2 cut(s) 192, 385
BccI CCATC 2 cut(s) 302, 327
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 1 cut(s) 175
BcoDI GTCTC 3 cut(s) 202, 359, 440
BfaI CTAG 3 cut(s) 201, 330, 509
BisI GCNGC 3 cut(s) 5, 206, 399
BlsI GCNGC 3 cut(s) 6, 207, 400
Bme1390I CCNGG 1 cut(s) 175
BmrFI CCNGG 1 cut(s) 175
BpmI CTGGAG 1 cut(s) 464
BsaJI CCNNGG 2 cut(s) 174, 456
Bsc4I CCNNNNNNNGG 3 cut(s) 247, 284, 285
Bse1I ACTGG 2 cut(s) 64, 434
Bse21I CCTNAGG 1 cut(s) 246
BseBI CCWGG 1 cut(s) 175
BseDI CCNNGG 2 cut(s) 174, 456
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 3 cut(s) 247, 284, 285
BseNI ACTGG 2 cut(s) 64, 434
BseRI GAGGAG 1 cut(s) 431
BseXI GCAGC 2 cut(s) 192, 385
BshFI GGCC 1 cut(s) 173
BsiHKAI GWGCWC 1 cut(s) 423
BslI CCNNNNNNNGG 3 cut(s) 247, 284, 285
BsmAI GTCTC 3 cut(s) 202, 359, 440
BsmI GAATGC 1 cut(s) 314
BsnI GGCC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 423
Bsp143I GATC 2 cut(s) 142, 297
BspANI GGCC 1 cut(s) 173
BsrI ACTGG 2 cut(s) 64, 434
BssECI CCNNGG 2 cut(s) 174, 456
BssMI GATC 2 cut(s) 142, 297
BssT1I CCWWGG 1 cut(s) 456
Bst2UI CCWGG 1 cut(s) 175
Bst4CI ACNGT 2 cut(s) 23, 425
Bst6I CTCTTC 1 cut(s) 155
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 3 cut(s) 246, 541, 549
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 2 cut(s) 145, 300
BstMAI GTCTC 3 cut(s) 202, 359, 440
BstMBI GATC 2 cut(s) 142, 297
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNI CCWGG 1 cut(s) 175
BstNSI RCATGY 2 cut(s) 377, 393
BstSCI CCNGG 1 cut(s) 173
BstV1I GCAGC 2 cut(s) 192, 385
Bsu36I CCTNAGG 1 cut(s) 246
BsuRI GGCC 1 cut(s) 173
BtsCI GGATG 1 cut(s) 184
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 2 cut(s) 71, 270
Cac8I GCNNGC 1 cut(s) 391
Csp6I GTAC 1 cut(s) 258
CviAII CATG 3 cut(s) 374, 390, 485
CviJI RGCY 7 cut(s) 173, 205, 235, 275, 398, 536, 548
CviKI_1 RGCY 7 cut(s) 173, 205, 235, 275, 398, 536, 548
CviQI GTAC 1 cut(s) 258
DdeI CTNAG 3 cut(s) 246, 541, 549
DpnI GATC 2 cut(s) 144, 299
DpnII GATC 2 cut(s) 142, 297
Eam1104I CTCTTC 1 cut(s) 155
EarI CTCTTC 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 456
Eco81I CCTNAGG 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 456
ErhI CCWWGG 1 cut(s) 456
FaeI CATG 3 cut(s) 377, 393, 488
FaiI YATR 8 cut(s) 16, 35, 118, 375, 391, 486, 520, 522
FatI CATG 3 cut(s) 373, 389, 484
Fnu4HI GCNGC 3 cut(s) 5, 206, 399
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 3 cut(s) 5, 206, 399
FspBI CTAG 3 cut(s) 201, 330, 509
GluI GCNGC 3 cut(s) 5, 206, 399
GsuI CTGGAG 1 cut(s) 464
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 3 cut(s) 377, 393, 488
HinfI GANTC 2 cut(s) 154, 488
HphI GGTGA 2 cut(s) 53, 304
Hpy188I TCNGA 3 cut(s) 27, 159, 359
Hpy188III TCNNGA 1 cut(s) 443
HpyAV CCTTC 2 cut(s) 124, 328
HpyCH4III ACNGT 2 cut(s) 23, 425
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 5 cut(s) 7, 208, 314, 393, 484
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 3 cut(s) 246, 541, 549
HpySE526I ACGT 1 cut(s) 256
Hsp92II CATG 3 cut(s) 377, 393, 488
Kzo9I GATC 2 cut(s) 142, 297
LmnI GCTCC 2 cut(s) 280, 418
LpnPI CCDG 6 cut(s) 77, 160, 187, 294, 428, 447
Lsp1109I GCAGC 2 cut(s) 192, 385
MaeI CTAG 3 cut(s) 201, 330, 509
MaeII ACGT 1 cut(s) 256
MaeIII GTNAC 1 cut(s) 17
MalI GATC 2 cut(s) 144, 299
MboI GATC 2 cut(s) 142, 297
MboII GAAGA 2 cut(s) 172, 307
MhlI GDGCHC 1 cut(s) 423
MluCI AATT 6 cut(s) 77, 92, 123, 212, 226, 496
MnlI CCTC 6 cut(s) 156, 163, 247, 409, 454, 538
MseI TTAA 3 cut(s) 86, 252, 495
MspR9I CCNGG 1 cut(s) 175
Mva1269I GAATGC 1 cut(s) 314
MvaI CCWGG 1 cut(s) 175
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeII GATC 2 cut(s) 142, 297
NlaIII CATG 3 cut(s) 377, 393, 488
NspI RCATGY 2 cut(s) 377, 393
PaeI GCATGC 1 cut(s) 393
PctI GAATGC 1 cut(s) 314
PfeI GAWTC 2 cut(s) 154, 488
PkrI GCNGC 3 cut(s) 6, 207, 400
Psp6I CCWGG 1 cut(s) 173
PspGI CCWGG 1 cut(s) 173
RsaI GTAC 1 cut(s) 259
RsaNI GTAC 1 cut(s) 258
SaqAI TTAA 3 cut(s) 86, 252, 495
SatI GCNGC 3 cut(s) 5, 206, 399
Sau3AI GATC 2 cut(s) 142, 297
ScrFI CCNGG 1 cut(s) 175
SduI GDGCHC 1 cut(s) 423
SetI ASST 9 cut(s) 15, 167, 221, 247, 252, 259, 277, 465, 538
SphI GCATGC 1 cut(s) 393
Sse9I AATT 6 cut(s) 77, 92, 123, 212, 226, 496
SspI AATATT 1 cut(s) 384
SspMI CTAG 3 cut(s) 201, 330, 509
StyD4I CCNGG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 456
TaaI ACNGT 2 cut(s) 23, 425
TaiI ACGT 1 cut(s) 259
TasI AATT 6 cut(s) 77, 92, 123, 212, 226, 496
TfiI GAWTC 2 cut(s) 154, 488
Tru1I TTAA 3 cut(s) 86, 252, 495
Tru9I TTAA 3 cut(s) 86, 252, 495
TscAI CASTG 2 cut(s) 71, 270
TseI GCWGC 3 cut(s) 4, 205, 398
TspDTI ATGAA 1 cut(s) 90
TspRI CASTG 2 cut(s) 71, 270
XapI RAATTY 2 cut(s) 123, 212
XceI RCATGY 2 cut(s) 377, 393
XspI CTAG 3 cut(s) 201, 330, 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.