Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0020730

Physical Location & Seq

Genomic Coordinates Reverse (-)

17887929 .. 17895192

Gene Structure 7264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG201200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 162 bp

ATGATGAAAATGACTCAGAAAAGTACTTACCTGGTCACCTTCCTACTGTTGGTGTGCGAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCAATGATCCGCCTGTTGCTCCTACAAGCAAGTTGATCATGTTCATGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000775 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006325 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008213 GO:0008276 GO:0008327 GO:0008757 GO:0009987 GO:0010216 GO:0010385 GO:0010428 GO:0010429 GO:0016043 GO:0016278 GO:0016279 GO:0016569 GO:0016570 GO:0016571 GO:0016740 GO:0016741 GO:0018022 GO:0018024 GO:0018193 GO:0018205 GO:0019538 GO:0032259 GO:0034641 GO:0034968 GO:0036094 GO:0036211 GO:0042054 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043412 GO:0043414 GO:0043565 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0046974 GO:0051276 GO:0051567 GO:0061647 GO:0071704 GO:0071840 GO:0090304 GO:0097159 GO:0098687 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00310 ko04211 map00310 map04211

Pfam Domains

Protein Families

Pre-SET SAD_SRA SET

Protein Analysis

53

Amino Acids

5.83

Weight (kDa)

4.45

Isoelectric Point (pI)

34.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020730)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001317.1_g000011
rosa_rugosa	Rorug06G0179000 Rorug06G0179100
rosa_samantha	Rh5AG465600 Rh5CG417000 Rh7CG201200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	110
AfaI	GTAC	1 cut(s)	25
AfiI	CCNNNNNNNGG	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	1 cut(s)	98
AluI	AGCT	1 cut(s)	98
AlwI	GGATC	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	28
AsuNHI	GCTAGC	1 cut(s)	98
BciT130I	CCWGG	1 cut(s)	32
BclI	TGATCA	1 cut(s)	144
BfaI	CTAG	2 cut(s)	77, 99
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	32
BmrI	ACTGGG	1 cut(s)	78
BmtI	GCTAGC	1 cut(s)	102
BmuI	ACTGGG	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse1I	ACTGG	1 cut(s)	73
BseBI	CCWGG	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	1 cut(s)	29
BseNI	ACTGG	1 cut(s)	73
BslI	CCNNNNNNNGG	1 cut(s)	49
Bsp143I	GATC	2 cut(s)	115, 144
BspACI	CCGC	1 cut(s)	119
BspCNI	CTCAG	1 cut(s)	28
BspOI	GCTAGC	1 cut(s)	102
BspPI	GGATC	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	73
BssMI	GATC	2 cut(s)	115, 144
Bst2UI	CCWGG	1 cut(s)	32
Bst4CI	ACNGT	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	100
BstDEI	CTNAG	1 cut(s)	15
BstEII	GGTNACC	1 cut(s)	34
BstKTI	GATC	2 cut(s)	118, 147
BstMBI	GATC	2 cut(s)	115, 144
BstMWI	GCNNNNNNNGC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	32
BstPI	GGTNACC	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	30
Cac8I	GCNNGC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	30
Csp6I	GTAC	1 cut(s)	24
CviAII	CATG	2 cut(s)	148, 154
CviJI	RGCY	1 cut(s)	98
CviKI_1	RGCY	1 cut(s)	98
CviQI	GTAC	1 cut(s)	24
DdeI	CTNAG	1 cut(s)	15
DpnI	GATC	2 cut(s)	117, 146
DpnII	GATC	2 cut(s)	115, 144
EciI	GGCGGA	1 cut(s)	108
Eco91I	GGTNACC	1 cut(s)	34
EcoO65I	GGTNACC	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	30
FaeI	CATG	2 cut(s)	151, 157
FaiI	YATR	3 cut(s)	65, 149, 155
FatI	CATG	2 cut(s)	147, 153
FbaI	TGATCA	1 cut(s)	144
FspBI	CTAG	2 cut(s)	77, 99
Hin1II	CATG	2 cut(s)	151, 157
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	77
HpyAV	CCTTC	1 cut(s)	49
HpyCH4III	ACNGT	1 cut(s)	48
HpyF10VI	GCNNNNNNNGC	1 cut(s)	95
HpyF3I	CTNAG	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	151, 157
Ksp22I	TGATCA	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	115, 144
LmnI	GCTCC	1 cut(s)	133
LpnPI	CCDG	5 cut(s)	17, 44, 54, 108, 135
MabI	ACCWGGT	1 cut(s)	30
MaeI	CTAG	2 cut(s)	77, 99
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	117, 146
MboI	GATC	2 cut(s)	115, 144
MluCI	AATT	1 cut(s)	103
MlyI	GAGTC	1 cut(s)	7
MnlI	CCTC	2 cut(s)	52, 73
MslI	CAYNNNNRTG	1 cut(s)	152
MspR9I	CCNGG	1 cut(s)	32
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	1 cut(s)	95
NdeII	GATC	2 cut(s)	115, 144
NheI	GCTAGC	1 cut(s)	98
NlaIII	CATG	2 cut(s)	151, 157
NmuCI	GTSAC	1 cut(s)	34
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
Psp6I	CCWGG	1 cut(s)	30
PspEI	GGTNACC	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	25
RsaNI	GTAC	1 cut(s)	24
RseI	CAYNNNNRTG	1 cut(s)	152
Sau3AI	GATC	2 cut(s)	115, 144
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	1 cut(s)	32
SetI	ASST	3 cut(s)	33, 41, 100
SexAI	ACCWGGT	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	152
Sse9I	AATT	1 cut(s)	103
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	2 cut(s)	77, 99
StyD4I	CCNGG	1 cut(s)	30
TaaI	ACNGT	1 cut(s)	48
TasI	AATT	1 cut(s)	103
TatI	WGTACW	1 cut(s)	23
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	20, 142
XbaI	TCTAGA	1 cut(s)	76
XspI	CTAG	2 cut(s)	77, 99
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.