Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0020730

Physical Location & Seq

Genomic Coordinates Forward (+)

79787306 .. 79792291

Gene Structure 4986 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG465600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGTGAACCAGTTGGTGTGCGAGGACATAACTGGGGGTCTAGAGGATATTGCCATTCCAGCTAGCAATTTGGTCGATGATCCGCCTGTTGCTCCTACAGGCAAGTTGATCATGTTCATGGAGTTTACATTGTCTATATGGGAGAAAGAAAGTATGGAAACCCCGAGCTGGCATCTGAGTCTCACCGCAACAACTGAGTCAGACATTGAAGAAACTCTCAAGAGGCTTGTGGGGGAATTTAAGATGTCTCCGGAAGAGGTTTTTGATGCTCTGAAAAATCAGACTGTAGATCTTGTCTTCACTGCTCATCCTACACAATCAATTCAAGCTGCATTTCGTACGGATGAGATCAGAAGAACAGCTCCGACTCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004611 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006950 GO:0007154 GO:0007275 GO:0008150 GO:0008964 GO:0009267 GO:0009507 GO:0009536 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016043 GO:0016829 GO:0016830 GO:0016831 GO:0022607 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050896 GO:0051259 GO:0051262 GO:0051716 GO:0065003 GO:0071496 GO:0071840 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko00620 ko00680 ko00710 ko00720 ko01100 ko01120 ko01200 map00620 map00680 map00710 map00720 map01100 map01120 map01200

Pfam Domains

Protein Families

PEPcase

Protein Analysis

124

Amino Acids

13.82

Weight (kDa)

4.35

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PEPcase	PF00311	61 - 111	1.7e-07	Phosphoenolpyruvate carboxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020730)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0001317.1_g000011
rosa_rugosa	Rorug06G0179000 Rorug06G0179100
rosa_samantha	Rh5AG465600 Rh5CG417000 Rh7CG201200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	250
AciI	CCGC	2 cut(s)	83, 186
AclWI	GGATC	1 cut(s)	74
AcsI	RAATTY	1 cut(s)	236
AfaI	GTAC	1 cut(s)	340
AfiI	CCNNNNNNNGG	1 cut(s)	168
AgsI	TTSAA	2 cut(s)	209, 326
AluBI	AGCT	4 cut(s)	62, 168, 329, 362
AluI	AGCT	4 cut(s)	62, 168, 329, 362
Alw26I	GTCTC	2 cut(s)	185, 252
AlwI	GGATC	1 cut(s)	74
Ama87I	CYCGRG	1 cut(s)	163
Aor13HI	TCCGGA	1 cut(s)	250
ApeKI	GCWGC	1 cut(s)	329
ApoI	RAATTY	1 cut(s)	236
AsuHPI	GGTGA	2 cut(s)	16, 175
AsuNHI	GCTAGC	1 cut(s)	62
AvaI	CYCGRG	1 cut(s)	163
BbsI	GAAGAC	1 cut(s)	289
BbvI	GCAGC	1 cut(s)	316
BcgI	CGANNNNNNTGC	2 cut(s)	55, 89
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	2 cut(s)	185, 252
BfaI	CTAG	2 cut(s)	41, 63
BfmI	CTRYAG	2 cut(s)	96, 285
BglII	AGATCT	1 cut(s)	289
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
BmeT110I	CYCGRG	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	42
BmsI	GCATC	2 cut(s)	181, 256
BmtI	GCTAGC	1 cut(s)	66
BmuI	ACTGGG	1 cut(s)	42
BpiI	GAAGAC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	203
BsaWI	WCCGGW	1 cut(s)	250
Bsc4I	CCNNNNNNNGG	1 cut(s)	168
Bse1I	ACTGG	2 cut(s)	10, 37
BseAI	TCCGGA	1 cut(s)	250
BseGI	GGATG	2 cut(s)	307, 349
BseLI	CCNNNNNNNGG	1 cut(s)	168
BseMII	CTCAG	2 cut(s)	167, 186
BseNI	ACTGG	2 cut(s)	10, 37
BseXI	GCAGC	1 cut(s)	316
BsiHKCI	CYCGRG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	251
BsiWI	CGTACG	1 cut(s)	338
BslI	CCNNNNNNNGG	1 cut(s)	168
BsmAI	GTCTC	2 cut(s)	185, 252
BsoBI	CYCGRG	1 cut(s)	163
Bsp13I	TCCGGA	1 cut(s)	250
Bsp143I	GATC	4 cut(s)	79, 108, 289, 348
BspACI	CCGC	2 cut(s)	83, 186
BspCNI	CTCAG	2 cut(s)	168, 187
BspEI	TCCGGA	1 cut(s)	250
BspOI	GCTAGC	1 cut(s)	66
BspPI	GGATC	1 cut(s)	74
BsrI	ACTGG	2 cut(s)	10, 37
BssMI	GATC	4 cut(s)	79, 108, 289, 348
Bst4CI	ACNGT	1 cut(s)	286
Bst6I	CTCTTC	1 cut(s)	249
BstC8I	GCNNGC	2 cut(s)	64, 170
BstDEI	CTNAG	2 cut(s)	176, 195
BstF5I	GGATG	2 cut(s)	307, 349
BstKTI	GATC	4 cut(s)	82, 111, 292, 351
BstMAI	GTCTC	2 cut(s)	185, 252
BstMBI	GATC	4 cut(s)	79, 108, 289, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstSFI	CTRYAG	2 cut(s)	96, 285
BstV1I	GCAGC	1 cut(s)	316
BstV2I	GAAGAC	1 cut(s)	289
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	307, 349
BtsI	GCAGTG	1 cut(s)	300
BtsIMutI	CAGTG	1 cut(s)	300
Cac8I	GCNNGC	2 cut(s)	64, 170
Csp6I	GTAC	1 cut(s)	339
CviAII	CATG	2 cut(s)	112, 118
CviJI	RGCY	5 cut(s)	62, 168, 226, 329, 362
CviKI_1	RGCY	5 cut(s)	62, 168, 226, 329, 362
CviQI	GTAC	1 cut(s)	339
DdeI	CTNAG	2 cut(s)	176, 195
DpnI	GATC	4 cut(s)	81, 110, 291, 350
DpnII	GATC	4 cut(s)	79, 108, 289, 348
Eam1104I	CTCTTC	1 cut(s)	249
EarI	CTCTTC	1 cut(s)	249
EciI	GGCGGA	1 cut(s)	72
Eco88I	CYCGRG	1 cut(s)	163
FaeI	CATG	2 cut(s)	115, 121
FaiI	YATR	7 cut(s)	29, 113, 119, 137, 139, 155, 373
FatI	CATG	2 cut(s)	111, 117
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	2 cut(s)	294, 356
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	41, 63
GluI	GCNGC	1 cut(s)	330
HapII	CCGG	1 cut(s)	251
Hin1II	CATG	2 cut(s)	115, 121
HinfI	GANTC	3 cut(s)	178, 197, 367
HpaII	CCGG	1 cut(s)	251
HphI	GGTGA	2 cut(s)	16, 175
Hpy166II	GTNNAC	2 cut(s)	7, 126
Hpy188I	TCNGA	6 cut(s)	177, 202, 273, 282, 353, 366
Hpy188III	TCNNGA	3 cut(s)	41, 220, 251
Hpy8I	GTNNAC	2 cut(s)	7, 126
HpyCH4III	ACNGT	1 cut(s)	286
HpyCH4V	TGCA	1 cut(s)	332
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
HpyF3I	CTNAG	2 cut(s)	176, 195
Hsp92II	CATG	2 cut(s)	115, 121
Kpn2I	TCCGGA	1 cut(s)	250
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	4 cut(s)	79, 108, 289, 348
LmnI	GCTCC	2 cut(s)	97, 367
LpnPI	CCDG	7 cut(s)	18, 23, 72, 84, 99, 154, 264
Lsp1109I	GCAGC	1 cut(s)	316
LweI	GCATC	2 cut(s)	181, 256
MaeI	CTAG	2 cut(s)	41, 63
MalI	GATC	4 cut(s)	81, 110, 291, 350
MboI	GATC	4 cut(s)	79, 108, 289, 348
MboII	GAAGA	4 cut(s)	221, 266, 289, 366
MflI	RGATCY	1 cut(s)	289
MluCI	AATT	3 cut(s)	67, 236, 321
MlyI	GAGTC	3 cut(s)	187, 206, 361
MnlI	CCTC	4 cut(s)	16, 37, 216, 250
MroI	TCCGGA	1 cut(s)	250
MseI	TTAA	1 cut(s)	240
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	59
NdeII	GATC	4 cut(s)	79, 108, 289, 348
NheI	GCTAGC	1 cut(s)	62
NlaIII	CATG	2 cut(s)	115, 121
Pfl23II	CGTACG	1 cut(s)	338
PkrI	GCNGC	1 cut(s)	331
PleI	GAGTC	3 cut(s)	186, 205, 361
PpsI	GAGTC	3 cut(s)	186, 205, 361
PspLI	CGTACG	1 cut(s)	338
PsuI	RGATCY	1 cut(s)	289
RsaI	GTAC	1 cut(s)	340
RsaNI	GTAC	1 cut(s)	339
RseI	CAYNNNNRTG	1 cut(s)	116
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	4 cut(s)	79, 108, 289, 348
SchI	GAGTC	3 cut(s)	187, 206, 361
SetI	ASST	5 cut(s)	64, 170, 261, 331, 364
SfaNI	GCATC	2 cut(s)	181, 256
SfcI	CTRYAG	2 cut(s)	96, 285
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	218
SmoI	CTYRAG	1 cut(s)	218
Sse9I	AATT	3 cut(s)	67, 236, 321
SsiI	CCGC	2 cut(s)	83, 186
SspMI	CTAG	2 cut(s)	41, 63
TaaI	ACNGT	1 cut(s)	286
TaqI	TCGA	1 cut(s)	75
TasI	AATT	3 cut(s)	67, 236, 321
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	307
TseI	GCWGC	1 cut(s)	329
TspDTI	ATGAA	1 cut(s)	106
TspGWI	ACGGA	1 cut(s)	356
TspRI	CASTG	1 cut(s)	307
XapI	RAATTY	1 cut(s)	236
XbaI	TCTAGA	1 cut(s)	40
XspI	CTAG	2 cut(s)	41, 63

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.