Rorug06G0179000

ADP-ribosylation factor GTPase-activating protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000147
Physical Location & Seq
Forward (+)
28233594 .. 28245488
11895 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0179000.1

Sequence Viewer

Length: 843 bp
ATGATGGCGGCTCCGAGAAATCTGGTGGGGCTCAGGGATGAAGAGAATGCCAAGGTGGCGGCGGAGGACGACCAGCAGGACGATGATTGGTCCACCGGCAAGAAGCCCAAGTCGGAGCGCTTGCCCCTCTCCCGCTGGGAGGTCGCCGCTGCTCTCTCCGTCTTCTTCATATTCTCCTCCGGCCTTTTCTGTGTCTACTTGACCATGCCCGCCGCCGATTACGGTAAACTCAAGCTTCCACGCACCATTGCCGATCTTCGCTTGCTCAAAGATCATCTTGGCACCTATGCAAACGATTATCCAGCTCAATTCATTCTGGGTTACTGTTCCACATACATCTTCATGCAGACTTTCATGATTCCCGGAACGATATTCATGTCATTGCTGGCCGGAGCTCTTTTCGGGGTTTTCAGGGGCCTTCTCTTGGTTGTCTTCAACGCCACAGCTGGAGCTTCTTCCTGCTTCTTTTTGTCCAAGTTAATTGGCAGGCCTTTAGTCAGTTGGTTGTGGCCCGAAAAATTGAGATTCTTTCAGGCAGAGATCGCAAAGCGCAGGGAAAAGCTGCTCAACTATATGCTTTTCCTGAGGATAACTCCAACATTGCCAAACCTTTTCATCAACTTGGCATCTCCCATTGTTGACATACCCTTTCACATTTTCTTTCTTGCAACTTTGATTGGTCTTATTCCAGCCTCTTATATCACAGTCAGAGCTGGCCTTGCTCTTGGGGATCTCAAGTCAGTCAAGGACCTCTACGATTTTAAAACATTATTTGTGCTTTTCCTTATTGGTTCAGTGATTATATTTCCAACACTTTTGAAGAGAAAGCGAATCTATGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
ArfGap

Protein Analysis

280

Amino Acids

31.62

Weight (kDa)

9.36

Isoelectric Point (pI)

37.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VTT_dom PF09335 120 - 239 1.7e-15 VTT domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 195
AciI CCGC 7 cut(s) 8, 59, 62, 133, 147, 210, 213
AclWI GGATC 1 cut(s) 738
AcoI YGGCCR 1 cut(s) 387
AfeI AGCGCT 1 cut(s) 119
AfiI CCNNNNNNNGG 2 cut(s) 139, 424
AgsI TTSAA 2 cut(s) 436, 820
AluBI AGCT 7 cut(s) 235, 305, 395, 446, 452, 562, 713
AluI AGCT 7 cut(s) 235, 305, 395, 446, 452, 562, 713
Alw21I GWGCWC 1 cut(s) 397
AlwI GGATC 1 cut(s) 738
Aor51HI AGCGCT 1 cut(s) 119
AoxI GGCC 6 cut(s) 181, 387, 415, 488, 509, 715
ApeKI GCWGC 2 cut(s) 149, 562
AspLEI GCGC 2 cut(s) 120, 552
AspS9I GGNCC 4 cut(s) 90, 415, 510, 748
AsuC2I CCSGG 1 cut(s) 363
AvaII GGWCC 2 cut(s) 90, 748
AxyI CCTNAGG 1 cut(s) 584
BanI GGYRCC 1 cut(s) 281
BanII GRGCYC 2 cut(s) 33, 397
BbsI GAAGAC 2 cut(s) 154, 424
Bbv12I GWGCWC 1 cut(s) 397
BbvI GCAGC 2 cut(s) 136, 549
BcnI CCSGG 1 cut(s) 363
BfoI RGCGCY 1 cut(s) 121
BglI GCCNNNNNGGC 1 cut(s) 56
BisI GCNGC 6 cut(s) 9, 60, 147, 150, 213, 563
BlsI GCNGC 6 cut(s) 10, 61, 148, 151, 214, 564
Bme1390I CCNGG 1 cut(s) 363
Bme18I GGWCC 2 cut(s) 90, 748
BmgT120I GGNCC 4 cut(s) 90, 415, 510, 748
BmiI GGNNCC 3 cut(s) 12, 283, 416
BmrFI CCNGG 1 cut(s) 363
BmsI GCATC 1 cut(s) 635
BpiI GAAGAC 2 cut(s) 154, 424
BplI GAGNNNNNCTC 2 cut(s) 577, 609
BpmI CTGGAG 1 cut(s) 468
Bpu10I CCTNAGC 1 cut(s) 32
BpuEI CTTGAG 2 cut(s) 215, 719
BpuMI CCSGG 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 51
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 424
Bse118I RCCGGY 1 cut(s) 95
Bse21I CCTNAGG 1 cut(s) 584
Bse3DI GCAATG 3 cut(s) 246, 380, 599
BseDI CCNNGG 1 cut(s) 51
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 2 cut(s) 139, 424
BseMI GCAATG 3 cut(s) 246, 380, 599
BseMII CTCAG 2 cut(s) 46, 575
BseRI GAGGAG 1 cut(s) 166
BseXI GCAGC 2 cut(s) 136, 549
BseYI CCCAGC 1 cut(s) 135
BshFI GGCC 6 cut(s) 183, 389, 417, 490, 511, 717
BshNI GGYRCC 1 cut(s) 281
BsiHKAI GWGCWC 1 cut(s) 397
BsiSI CCGG 4 cut(s) 96, 180, 363, 390
BslI CCNNNNNNNGG 2 cut(s) 139, 424
BsmI GAATGC 1 cut(s) 52
BsnI GGCC 6 cut(s) 183, 389, 417, 490, 511, 717
Bsp1286I GDGCHC 2 cut(s) 33, 397
Bsp143I GATC 4 cut(s) 253, 271, 540, 730
BspACI CCGC 7 cut(s) 8, 59, 62, 133, 147, 210, 213
BspANI GGCC 6 cut(s) 183, 389, 417, 490, 511, 717
BspCNI CTCAG 2 cut(s) 45, 576
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 3 cut(s) 12, 283, 416
BspPI GGATC 1 cut(s) 738
BspT107I GGYRCC 1 cut(s) 281
BsrDI GCAATG 3 cut(s) 246, 380, 599
BsrFI RCCGGY 1 cut(s) 95
BssAI RCCGGY 1 cut(s) 95
BssECI CCNNGG 1 cut(s) 51
BssMI GATC 4 cut(s) 253, 271, 540, 730
BssT1I CCWWGG 1 cut(s) 51
Bst4CI ACNGT 3 cut(s) 224, 326, 706
Bst6I CTCTTC 2 cut(s) 36, 815
BstC8I GCNNGC 6 cut(s) 122, 210, 263, 387, 488, 715
BstDEI CTNAG 2 cut(s) 32, 584
BstF5I GGATG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 2 cut(s) 120, 552
BstKTI GATC 4 cut(s) 256, 274, 543, 733
BstMBI GATC 4 cut(s) 253, 271, 540, 730
BstMWI GCNNNNNNNGC 3 cut(s) 56, 542, 719
BstSCI CCNGG 1 cut(s) 361
BstV1I GCAGC 2 cut(s) 136, 549
BstV2I GAAGAC 2 cut(s) 154, 424
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
Bsu36I CCTNAGG 1 cut(s) 584
BsuRI GGCC 6 cut(s) 183, 389, 417, 490, 511, 717
BtsCI GGATG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 801
Cac8I GCNNGC 6 cut(s) 122, 210, 263, 387, 488, 715
CciI TCATGA 1 cut(s) 354
CfoI GCGC 2 cut(s) 120, 552
Cfr10I RCCGGY 1 cut(s) 95
Cfr13I GGNCC 4 cut(s) 90, 415, 510, 748
CviAII CATG 4 cut(s) 205, 343, 355, 376
DdeI CTNAG 2 cut(s) 32, 584
DpnI GATC 4 cut(s) 255, 273, 542, 732
DpnII GATC 4 cut(s) 253, 271, 540, 730
DraI TTTAAA 1 cut(s) 763
EaeI YGGCCR 1 cut(s) 387
Eam1104I CTCTTC 2 cut(s) 36, 815
EarI CTCTTC 2 cut(s) 36, 815
EciI GGCGGA 1 cut(s) 77
Ecl136II GAGCTC 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 51
Eco147I AGGCCT 1 cut(s) 490
Eco24I GRGCYC 2 cut(s) 33, 397
Eco47I GGWCC 2 cut(s) 90, 748
Eco47III AGCGCT 1 cut(s) 119
Eco53kI GAGCTC 1 cut(s) 395
Eco81I CCTNAGG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 395
EcoO109I RGGNCCY 2 cut(s) 415, 748
EcoT14I CCWWGG 1 cut(s) 51
EcoT38I GRGCYC 2 cut(s) 33, 397
ErhI CCWWGG 1 cut(s) 51
FaeI CATG 4 cut(s) 208, 346, 358, 379
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FatI CATG 4 cut(s) 204, 342, 354, 375
FauI CCCGC 2 cut(s) 140, 217
FblI GTMKAC 1 cut(s) 195
Fnu4HI GCNGC 6 cut(s) 9, 60, 147, 150, 213, 563
FokI GGATG 1 cut(s) 50
FriOI GRGCYC 2 cut(s) 33, 397
Fsp4HI GCNGC 6 cut(s) 9, 60, 147, 150, 213, 563
GlaI GCGC 2 cut(s) 119, 551
GluI GCNGC 6 cut(s) 9, 60, 147, 150, 213, 563
GsaI CCCAGC 1 cut(s) 139
GsuI CTGGAG 1 cut(s) 468
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 6 cut(s) 183, 389, 417, 490, 511, 717
HapII CCGG 4 cut(s) 96, 180, 363, 390
HhaI GCGC 2 cut(s) 120, 552
Hin1II CATG 4 cut(s) 208, 346, 358, 379
Hin6I GCGC 2 cut(s) 118, 550
HinP1I GCGC 2 cut(s) 118, 550
HincII GTYRAC 1 cut(s) 640
HindII GTYRAC 1 cut(s) 640
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 3 cut(s) 358, 525, 831
HpaII CCGG 4 cut(s) 96, 180, 363, 390
Hpy166II GTNNAC 4 cut(s) 93, 196, 227, 640
Hpy188I TCNGA 3 cut(s) 15, 115, 710
Hpy188III TCNNGA 2 cut(s) 355, 583
Hpy8I GTNNAC 4 cut(s) 93, 196, 227, 640
HpyAV CCTTC 1 cut(s) 428
HpyCH4III ACNGT 3 cut(s) 224, 326, 706
HpyCH4V TGCA 3 cut(s) 290, 346, 668
HpyF10VI GCNNNNNNNGC 3 cut(s) 56, 542, 719
HpyF3I CTNAG 2 cut(s) 32, 584
Hsp92II CATG 4 cut(s) 208, 346, 358, 379
HspAI GCGC 2 cut(s) 118, 550
Kzo9I GATC 4 cut(s) 253, 271, 540, 730
LmnI GCTCC 4 cut(s) 16, 115, 392, 449
Lsp1109I GCAGC 2 cut(s) 136, 549
LweI GCATC 1 cut(s) 635
MaeIII GTNAC 1 cut(s) 320
MalI GATC 4 cut(s) 255, 273, 542, 732
MboI GATC 4 cut(s) 253, 271, 540, 730
MboII GAAGA 8 cut(s) 53, 154, 157, 248, 331, 424, 447, 832
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 2 cut(s) 33, 397
MluCI AATT 3 cut(s) 308, 480, 518
MmeI TCCRAC 3 cut(s) 93, 620, 833
MnlI CCTC 7 cut(s) 58, 133, 137, 187, 579, 703, 761
MseI TTAA 2 cut(s) 479, 762
MslI CAYNNNNRTG 1 cut(s) 341
MspA1I CMGCKG 3 cut(s) 135, 149, 446
MspI CCGG 4 cut(s) 96, 180, 363, 390
MspR9I CCNGG 1 cut(s) 363
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 3 cut(s) 56, 542, 719
NciI CCSGG 1 cut(s) 363
NdeII GATC 4 cut(s) 253, 271, 540, 730
NlaIII CATG 4 cut(s) 208, 346, 358, 379
NlaIV GGNNCC 3 cut(s) 12, 283, 416
PagI TCATGA 1 cut(s) 354
PceI AGGCCT 1 cut(s) 490
PctI GAATGC 1 cut(s) 52
PfeI GAWTC 3 cut(s) 358, 525, 831
PfoI TCCNGGA 1 cut(s) 361
PkrI GCNGC 6 cut(s) 10, 61, 148, 151, 214, 564
PpuMI RGGWCCY 1 cut(s) 748
Psp124BI GAGCTC 1 cut(s) 397
Psp5II RGGWCCY 1 cut(s) 748
PspFI CCCAGC 1 cut(s) 135
PspN4I GGNNCC 3 cut(s) 12, 283, 416
PspPI GGNCC 4 cut(s) 90, 415, 510, 748
PspPPI RGGWCCY 1 cut(s) 748
PsuI RGATCY 1 cut(s) 730
PvuII CAGCTG 1 cut(s) 446
RseI CAYNNNNRTG 1 cut(s) 341
SacI GAGCTC 1 cut(s) 397
SaqAI TTAA 2 cut(s) 479, 762
SatI GCNGC 6 cut(s) 9, 60, 147, 150, 213, 563
Sau3AI GATC 4 cut(s) 253, 271, 540, 730
Sau96I GGNCC 4 cut(s) 90, 415, 510, 748
ScrFI CCNGG 1 cut(s) 363
SduI GDGCHC 2 cut(s) 33, 397
SfaNI GCATC 1 cut(s) 635
SinI GGWCC 2 cut(s) 90, 748
SmiMI CAYNNNNRTG 1 cut(s) 341
SmlI CTYRAG 2 cut(s) 230, 734
SmoI CTYRAG 2 cut(s) 230, 734
Sse9I AATT 3 cut(s) 308, 480, 518
SseBI AGGCCT 1 cut(s) 490
SsiI CCGC 7 cut(s) 8, 59, 62, 133, 147, 210, 213
SstI GAGCTC 1 cut(s) 397
StuI AGGCCT 1 cut(s) 490
StyD4I CCNGG 1 cut(s) 361
StyI CCWWGG 1 cut(s) 51
TaaI ACNGT 3 cut(s) 224, 326, 706
TasI AATT 3 cut(s) 308, 480, 518
TauI GCSGC 4 cut(s) 11, 62, 149, 215
TfiI GAWTC 3 cut(s) 358, 525, 831
Tru1I TTAA 2 cut(s) 479, 762
Tru9I TTAA 2 cut(s) 479, 762
TscAI CASTG 1 cut(s) 801
TseI GCWGC 2 cut(s) 149, 562
TspDTI ATGAA 7 cut(s) 54, 157, 301, 331, 343, 364, 604
TspGWI ACGGA 1 cut(s) 148
TspRI CASTG 1 cut(s) 801
VpaK11BI GGWCC 2 cut(s) 90, 748
XmiI GTMKAC 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.