Rmu_sc0000543.1_g000048

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000543.1
OG0000147
Physical Location & Seq
Reverse (-)
226229 .. 227323
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000543.1_g000048.1.cds

Sequence Viewer

Length: 993 bp
atgtatgggcccccctatcatgcagataaagctgaattttgggaatcttggtgtagaaaaggtcacaacaatggcgacccttggctggtgattggggatcttaatgagatgatgtaccaatttgagatggagggtggtgctccctggagcccaaatttacgacagtatttacgcaactttgtcactaccaattcacttttggacataggttaccaaggtcaaagttttacttgggctagcaaagaagatggggttgtggtactacaagaaagacttgatcgaagcctagtatgtgataattggttaaagaagtggcgtgatacatgccttaatcatctcactcgtattgggtcagaccataacccaatcctcctttgtactaacccggtgctagttagacgtaagccgtctttcaagtttgaggcttactgggctgacgaagttgattcttttcccattgtcaaggattgctggaaatgcgaggagattaaggcctgcttaatagaattagaggatcttcaaatatatgctcctttctctagtgctgatcaacagcaggccaaatcaaacaagttgggtaccttgtgggtcaaagaagaaaaatattggcatcaaaggtctcgtgtcaattggcttaaaactggtgactcaaattcccgttttttccatctgtctacacttcatcgtagacaaaggaaccacatacttaagatccagaatgatgatggaatttggatagcaggggagaaccagattaggctggaatttgaaacccaattcaagctgattttcaaaagtgcaggcccttggcagtggagtaatgtttttgataggattactcctatagtaagtgatgaaatgaatggtagcctcctgatccccttcactattgaggaagtcaaagatgcagctttccaacttggagccttgaaagcgccgtggccagatgggtttccgggaatttttttaccacaaatactggaagttagttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

330

Amino Acids

38.52

Weight (kDa)

5.81

Isoelectric Point (pI)

42.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 578
AccB1I GGYRCC 1 cut(s) 578
AccI GTMKAC 2 cut(s) 674, 688
AclWI GGATC 4 cut(s) 105, 522, 706, 871
AcoI YGGCCR 1 cut(s) 941
AcsI RAATTY 6 cut(s) 35, 154, 652, 729, 764, 960
AfaI GTAC 4 cut(s) 116, 261, 379, 580
AfiI CCNNNNNNNGG 1 cut(s) 85
AflII CTTAAG 1 cut(s) 707
AgsI TTSAA 6 cut(s) 415, 521, 770, 781, 793, 931
AjnI CCWGG 1 cut(s) 143
AluBI AGCT 3 cut(s) 32, 784, 911
AluI AGCT 3 cut(s) 32, 784, 911
Alw21I GWGCWC 1 cut(s) 142
Alw26I GTCTC 1 cut(s) 624
AlwI GGATC 4 cut(s) 105, 522, 706, 871
AoxI GGCC 5 cut(s) 8, 492, 558, 802, 941
ApaI GGGCCC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 908
ApoI RAATTY 6 cut(s) 35, 154, 652, 729, 764, 960
Asp718I GGTACC 1 cut(s) 578
AspLEI GCGC 1 cut(s) 937
AspS9I GGNCC 3 cut(s) 8, 9, 803
AsuC2I CCSGG 2 cut(s) 386, 957
AsuHPI GGTGA 2 cut(s) 100, 656
AsuNHI GCTAGC 1 cut(s) 236
BaeGI GKGCMC 1 cut(s) 12
BalI TGGCCA 1 cut(s) 943
BanI GGYRCC 1 cut(s) 578
BanII GRGCYC 2 cut(s) 12, 152
BauI CACGAG 1 cut(s) 621
Bbv12I GWGCWC 1 cut(s) 142
BbvI GCAGC 1 cut(s) 920
BccI CCATC 5 cut(s) 121, 242, 675, 719, 941
BceAI ACGGC 2 cut(s) 391, 922
BciT130I CCWGG 1 cut(s) 145
BclI TGATCA 1 cut(s) 547
BcnI CCSGG 2 cut(s) 386, 957
BcoDI GTCTC 1 cut(s) 624
BfaI CTAG 4 cut(s) 237, 287, 392, 540
BfmI CTRYAG 1 cut(s) 843
BfoI RGCGCY 1 cut(s) 938
BfrI CTTAAG 1 cut(s) 707
BisI GCNGC 1 cut(s) 909
BlsI GCNGC 1 cut(s) 910
Bme1390I CCNGG 3 cut(s) 145, 386, 957
BmgT120I GGNCC 3 cut(s) 8, 9, 803
BmiI GGNNCC 6 cut(s) 10, 11, 149, 580, 698, 925
BmrFI CCNGG 3 cut(s) 145, 386, 957
BmrI ACTGGG 1 cut(s) 439
BmsI GCATC 2 cut(s) 619, 895
BmtI GCTAGC 1 cut(s) 240
BmuI ACTGGG 1 cut(s) 439
BpmI CTGGAG 1 cut(s) 166
BpuMI CCSGG 2 cut(s) 386, 957
BsaI GGTCTC 1 cut(s) 624
BsaJI CCNNGG 5 cut(s) 80, 143, 214, 806, 938
Bsc4I CCNNNNNNNGG 1 cut(s) 85
Bse1I ACTGG 3 cut(s) 434, 646, 984
BseBI CCWGG 1 cut(s) 145
BseDI CCNNGG 5 cut(s) 80, 143, 214, 806, 938
BseLI CCNNNNNNNGG 1 cut(s) 85
BseNI ACTGG 3 cut(s) 434, 646, 984
BseRI GAGGAG 1 cut(s) 497
BseSI GKGCMC 1 cut(s) 12
BseXI GCAGC 1 cut(s) 920
BsgI GTGCAG 1 cut(s) 819
BshFI GGCC 5 cut(s) 10, 494, 560, 804, 943
BshNI GGYRCC 1 cut(s) 578
BsiHKAI GWGCWC 1 cut(s) 142
BsiSI CCGG 2 cut(s) 386, 956
BslI CCNNNNNNNGG 1 cut(s) 85
BsmAI GTCTC 1 cut(s) 624
BsnI GGCC 5 cut(s) 10, 494, 560, 804, 943
Bso31I GGTCTC 1 cut(s) 624
Bsp120I GGGCCC 1 cut(s) 8
Bsp1286I GDGCHC 3 cut(s) 12, 142, 152
Bsp143I GATC 6 cut(s) 97, 277, 514, 547, 711, 876
BspANI GGCC 5 cut(s) 10, 494, 560, 804, 943
BspLI GGNNCC 6 cut(s) 10, 11, 149, 580, 698, 925
BspOI GCTAGC 1 cut(s) 240
BspPI GGATC 4 cut(s) 105, 522, 706, 871
BspT107I GGYRCC 1 cut(s) 578
BspTI CTTAAG 1 cut(s) 707
BspTNI GGTCTC 1 cut(s) 624
BsrI ACTGG 3 cut(s) 434, 646, 984
BssECI CCNNGG 5 cut(s) 80, 143, 214, 806, 938
BssMI GATC 6 cut(s) 97, 277, 514, 547, 711, 876
BssSI CACGAG 1 cut(s) 621
BssT1I CCWWGG 3 cut(s) 80, 214, 806
Bst2BI CACGAG 1 cut(s) 621
Bst2UI CCWGG 1 cut(s) 145
Bst4CI ACNGT 1 cut(s) 165
BstAFI CTTAAG 1 cut(s) 707
BstC8I GCNNGC 4 cut(s) 238, 496, 558, 802
BstDSI CCRYGG 1 cut(s) 938
BstEII GGTNACC 1 cut(s) 209
BstH2I RGCGCY 1 cut(s) 938
BstHHI GCGC 1 cut(s) 937
BstKTI GATC 6 cut(s) 100, 280, 517, 550, 714, 879
BstMAI GTCTC 1 cut(s) 624
BstMBI GATC 6 cut(s) 97, 277, 514, 547, 711, 876
BstMWI GCNNNNNNNGC 4 cut(s) 29, 431, 477, 932
BstNI CCWGG 1 cut(s) 145
BstNSI RCATGY 1 cut(s) 327
BstPI GGTNACC 1 cut(s) 209
BstSCI CCNGG 3 cut(s) 143, 384, 955
BstSFI CTRYAG 1 cut(s) 843
BstSLI GKGCMC 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 920
BstX2I RGATCY 3 cut(s) 97, 514, 711
BstYI RGATCY 3 cut(s) 97, 514, 711
BsuRI GGCC 5 cut(s) 10, 494, 560, 804, 943
BtgI CCRYGG 1 cut(s) 938
BtsI GCAGTG 1 cut(s) 818
BtsIMutI CAGTG 1 cut(s) 818
Cac8I GCNNGC 4 cut(s) 238, 496, 558, 802
CfoI GCGC 1 cut(s) 937
Cfr13I GGNCC 3 cut(s) 8, 9, 803
Csp6I GTAC 4 cut(s) 115, 260, 378, 579
CviAII CATG 2 cut(s) 20, 324
CviQI GTAC 4 cut(s) 115, 260, 378, 579
DpnI GATC 6 cut(s) 99, 279, 516, 549, 713, 878
DpnII GATC 6 cut(s) 97, 277, 514, 547, 711, 876
EaeI YGGCCR 1 cut(s) 941
Eco130I CCWWGG 3 cut(s) 80, 214, 806
Eco147I AGGCCT 1 cut(s) 494
Eco24I GRGCYC 2 cut(s) 12, 152
Eco31I GGTCTC 1 cut(s) 624
Eco91I GGTNACC 1 cut(s) 209
EcoO109I RGGNCCY 2 cut(s) 9, 803
EcoO65I GGTNACC 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 143
EcoT14I CCWWGG 3 cut(s) 80, 214, 806
EcoT38I GRGCYC 2 cut(s) 12, 152
ErhI CCWWGG 3 cut(s) 80, 214, 806
FaeI CATG 2 cut(s) 23, 327
FalI AAGNNNNNCTT 6 cut(s) 214, 246, 258, 290, 482, 514
FatI CATG 2 cut(s) 19, 323
FbaI TGATCA 1 cut(s) 547
FblI GTMKAC 2 cut(s) 674, 688
Fnu4HI GCNGC 1 cut(s) 909
FriOI GRGCYC 2 cut(s) 12, 152
Fsp4HI GCNGC 1 cut(s) 909
FspBI CTAG 4 cut(s) 237, 287, 392, 540
GlaI GCGC 1 cut(s) 936
GluI GCNGC 1 cut(s) 909
GsuI CTGGAG 1 cut(s) 166
HaeII RGCGCY 1 cut(s) 938
HaeIII GGCC 5 cut(s) 10, 494, 560, 804, 943
HapII CCGG 2 cut(s) 386, 956
HhaI GCGC 1 cut(s) 937
Hin1II CATG 2 cut(s) 23, 327
Hin6I GCGC 1 cut(s) 935
HinP1I GCGC 1 cut(s) 935
HinfI GANTC 3 cut(s) 44, 446, 647
HpaII CCGG 2 cut(s) 386, 956
HphI GGTGA 2 cut(s) 100, 656
Hpy166II GTNNAC 2 cut(s) 675, 689
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 2 cut(s) 715, 874
Hpy8I GTNNAC 2 cut(s) 675, 689
HpyAV CCTTC 1 cut(s) 892
HpyCH4III ACNGT 1 cut(s) 165
HpyCH4IV ACGT 1 cut(s) 400
HpyCH4V TGCA 3 cut(s) 23, 800, 908
HpyF10VI GCNNNNNNNGC 4 cut(s) 29, 431, 477, 932
HpySE526I ACGT 1 cut(s) 400
Hsp92II CATG 2 cut(s) 23, 327
HspAI GCGC 1 cut(s) 935
KpnI GGTACC 1 cut(s) 582
Ksp22I TGATCA 1 cut(s) 547
Kzo9I GATC 6 cut(s) 97, 277, 514, 547, 711, 876
LmnI GCTCC 4 cut(s) 145, 147, 535, 923
Lsp1109I GCAGC 1 cut(s) 920
LweI GCATC 2 cut(s) 619, 895
MaeI CTAG 4 cut(s) 237, 287, 392, 540
MaeII ACGT 1 cut(s) 400
MaeIII GTNAC 4 cut(s) 62, 181, 209, 644
MalI GATC 6 cut(s) 99, 279, 516, 549, 713, 878
MboI GATC 6 cut(s) 97, 277, 514, 547, 711, 876
MboII GAAGA 3 cut(s) 257, 509, 608
MfeI CAATTG 1 cut(s) 628
MflI RGATCY 3 cut(s) 97, 514, 711
MhlI GDGCHC 3 cut(s) 12, 142, 152
MlsI TGGCCA 1 cut(s) 943
MluNI TGGCCA 1 cut(s) 943
MlyI GAGTC 1 cut(s) 641
MmeI TCCRAC 1 cut(s) 940
MnlI CCTC 7 cut(s) 124, 380, 415, 475, 505, 881, 886
Mox20I TGGCCA 1 cut(s) 943
MscI TGGCCA 1 cut(s) 943
MseI TTAA 8 cut(s) 102, 305, 330, 489, 500, 636, 708, 991
MslI CAYNNNNRTG 1 cut(s) 69
Msp20I TGGCCA 1 cut(s) 943
MspCI CTTAAG 1 cut(s) 707
MspI CCGG 2 cut(s) 386, 956
MspR9I CCNGG 3 cut(s) 145, 386, 957
MunI CAATTG 1 cut(s) 628
MvaI CCWGG 1 cut(s) 145
MwoI GCNNNNNNNGC 4 cut(s) 29, 431, 477, 932
NciI CCSGG 2 cut(s) 386, 957
NdeII GATC 6 cut(s) 97, 277, 514, 547, 711, 876
NheI GCTAGC 1 cut(s) 236
NlaIII CATG 2 cut(s) 23, 327
NlaIV GGNNCC 6 cut(s) 10, 11, 149, 580, 698, 925
NmuCI GTSAC 3 cut(s) 62, 181, 644
NspI RCATGY 1 cut(s) 327
PceI AGGCCT 1 cut(s) 494
PfeI GAWTC 2 cut(s) 44, 446
PfoI TCCNGGA 1 cut(s) 955
PkrI GCNGC 1 cut(s) 910
PleI GAGTC 1 cut(s) 641
PpsI GAGTC 1 cut(s) 641
Psp6I CCWGG 1 cut(s) 143
PspEI GGTNACC 1 cut(s) 209
PspGI CCWGG 1 cut(s) 143
PspN4I GGNNCC 6 cut(s) 10, 11, 149, 580, 698, 925
PspOMI GGGCCC 1 cut(s) 8
PspPI GGNCC 3 cut(s) 8, 9, 803
PsuI RGATCY 3 cut(s) 97, 514, 711
RsaI GTAC 4 cut(s) 116, 261, 379, 580
RsaNI GTAC 4 cut(s) 115, 260, 378, 579
RseI CAYNNNNRTG 1 cut(s) 69
SaqAI TTAA 8 cut(s) 102, 305, 330, 489, 500, 636, 708, 991
SatI GCNGC 1 cut(s) 909
Sau3AI GATC 6 cut(s) 97, 277, 514, 547, 711, 876
Sau96I GGNCC 3 cut(s) 8, 9, 803
SchI GAGTC 1 cut(s) 641
ScrFI CCNGG 3 cut(s) 145, 386, 957
SduI GDGCHC 3 cut(s) 12, 142, 152
SetI ASST 9 cut(s) 34, 64, 211, 220, 403, 584, 620, 786, 913
SfaNI GCATC 2 cut(s) 619, 895
SfcI CTRYAG 1 cut(s) 843
SmiMI CAYNNNNRTG 1 cut(s) 69
SmlI CTYRAG 1 cut(s) 707
SmoI CTYRAG 1 cut(s) 707
SseBI AGGCCT 1 cut(s) 494
SspI AATATT 1 cut(s) 605
SspMI CTAG 4 cut(s) 237, 287, 392, 540
StuI AGGCCT 1 cut(s) 494
StyD4I CCNGG 3 cut(s) 143, 384, 955
StyI CCWWGG 3 cut(s) 80, 214, 806
TaaI ACNGT 1 cut(s) 165
TaiI ACGT 1 cut(s) 403
TaqI TCGA 1 cut(s) 280
TatI WGTACW 1 cut(s) 377
TfiI GAWTC 2 cut(s) 44, 446
Tru1I TTAA 8 cut(s) 102, 305, 330, 489, 500, 636, 708, 991
Tru9I TTAA 8 cut(s) 102, 305, 330, 489, 500, 636, 708, 991
TscAI CASTG 1 cut(s) 818
TseFI GTSAC 3 cut(s) 62, 181, 644
TseI GCWGC 1 cut(s) 908
Tsp45I GTSAC 3 cut(s) 62, 181, 644
TspDTI ATGAA 3 cut(s) 671, 870, 875
TspRI CASTG 1 cut(s) 818
Vha464I CTTAAG 1 cut(s) 707
XapI RAATTY 6 cut(s) 35, 154, 652, 729, 764, 960
XceI RCATGY 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 2 cut(s) 196, 722
XmiI GTMKAC 2 cut(s) 674, 688
XspI CTAG 4 cut(s) 237, 287, 392, 540
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.