FvH4_7g32472

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000147
Physical Location & Seq
Forward (+)
23354770 .. 23355943
1174 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g32472.t1

Sequence Viewer

Length: 408 bp
ATGGGTTTTTCTTCTGGTTTGACTGTTGAGCCTGAAGGGTTGGTGGGTTTGTCGGGTGGTTTGGCTTTATGGTGGAATTACTCGGTGGAGATTGATATCATTGATAGTTCGAATATTATTGATACTAGAATTACTTTTTTACAGGAGTCTAAAGTTAGCAGAGTAGTTTTTGTGTATGGTCCCCCGCAAGATACAGTGTTCAGTTTTCTCCAATGTTTTAAAAACGCGCCCTTAAGACTCAAAAGGTGCGAGGCGGGCAGTTTACTGAGTCAGCCTTGCAGCCTAGGCGCAGAGACGCCAAAGGCGCTGTGCAAGGCGTGCAAAGCGCATAAGGCACAAGTTCGCCTCAAGGTGAGAACCTTGCTAAGGCTCTCCCGGAACAGCCTCGGTTACGCCTTAGCCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos Exo_endo_phos_2

Protein Analysis

136

Amino Acids

14.81

Weight (kDa)

9.27

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 227
AciI CCGC 2 cut(s) 185, 254
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 296
AfiI CCNNNNNNNGG 1 cut(s) 366
AflII CTTAAG 1 cut(s) 232
Alw26I GTCTC 1 cut(s) 287
ApeKI GCWGC 1 cut(s) 279
AspA2I CCTAGG 1 cut(s) 283
AspLEI GCGC 4 cut(s) 229, 290, 307, 328
AspS9I GGNCC 1 cut(s) 179
AsuC2I CCSGG 1 cut(s) 376
AsuHPI GGTGA 1 cut(s) 364
AsuII TTCGAA 1 cut(s) 110
AvaII GGWCC 1 cut(s) 179
AvrII CCTAGG 1 cut(s) 283
BbvI GCAGC 1 cut(s) 291
BcnI CCSGG 1 cut(s) 376
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 2 cut(s) 126, 284
BfoI RGCGCY 1 cut(s) 308
BfrI CTTAAG 1 cut(s) 232
BisI GCNGC 1 cut(s) 280
BlnI CCTAGG 1 cut(s) 283
BlsI GCNGC 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 376
Bme18I GGWCC 1 cut(s) 179
BmgT120I GGNCC 1 cut(s) 179
BmiI GGNNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 376
Bpu10I CCTNAGC 2 cut(s) 365, 397
Bpu14I TTCGAA 1 cut(s) 110
BpuEI CTTGAG 1 cut(s) 332
BpuMI CCSGG 1 cut(s) 376
BsaBI GATNNNNATC 1 cut(s) 95
BsaHI GRCGYC 1 cut(s) 296
BsaJI CCNNGG 2 cut(s) 283, 385
Bsc4I CCNNNNNNNGG 1 cut(s) 366
Bse8I GATNNNNATC 1 cut(s) 95
BseDI CCNNGG 2 cut(s) 283, 385
BseJI GATNNNNATC 1 cut(s) 95
BseLI CCNNNNNNNGG 1 cut(s) 366
BseMII CTCAG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 291
Bsh1236I CGCG 1 cut(s) 227
BsiSI CCGG 1 cut(s) 376
BslFI GGGAC 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 366
BsmAI GTCTC 1 cut(s) 287
BsmBI CGTCTC 1 cut(s) 287
BsmFI GGGAC 1 cut(s) 165
Bsp119I TTCGAA 1 cut(s) 110
BspACI CCGC 2 cut(s) 185, 254
BspCNI CTCAG 1 cut(s) 258
BspFNI CGCG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 181
BspT104I TTCGAA 1 cut(s) 110
BspTI CTTAAG 1 cut(s) 232
BssECI CCNNGG 2 cut(s) 283, 385
BssNI GRCGYC 1 cut(s) 296
BssT1I CCWWGG 1 cut(s) 283
Bst4CI ACNGT 2 cut(s) 25, 196
BstACI GRCGYC 1 cut(s) 296
BstAFI CTTAAG 1 cut(s) 232
BstAPI GCANNNNNTGC 1 cut(s) 318
BstBI TTCGAA 1 cut(s) 110
BstC8I GCNNGC 2 cut(s) 256, 319
BstDEI CTNAG 3 cut(s) 266, 365, 397
BstENI CCTNNNNNAGG 1 cut(s) 364
BstFNI CGCG 1 cut(s) 227
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 4 cut(s) 229, 290, 307, 328
BstMAI GTCTC 1 cut(s) 287
BstMWI GCNNNNNNNGC 6 cut(s) 255, 285, 304, 318, 323, 332
BstSCI CCNGG 1 cut(s) 374
BstUI CGCG 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 291
BtsIMutI CAGTG 1 cut(s) 201
Cac8I GCNNGC 2 cut(s) 256, 319
CfoI GCGC 4 cut(s) 229, 290, 307, 328
Cfr13I GGNCC 1 cut(s) 179
CseI GACGC 1 cut(s) 304
CviJI RGCY 7 cut(s) 31, 65, 274, 282, 370, 384, 401
CviKI_1 RGCY 7 cut(s) 31, 65, 274, 282, 370, 384, 401
DdeI CTNAG 3 cut(s) 266, 365, 397
DraI TTTAAA 1 cut(s) 220
Eco130I CCWWGG 1 cut(s) 283
Eco32I GATATC 1 cut(s) 97
Eco47I GGWCC 1 cut(s) 179
Eco57I CTGAAG 1 cut(s) 54
EcoNI CCTNNNNNAGG 1 cut(s) 364
EcoRV GATATC 1 cut(s) 97
EcoT14I CCWWGG 1 cut(s) 283
ErhI CCWWGG 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 287
FaiI YATR 3 cut(s) 70, 177, 330
FaqI GGGAC 1 cut(s) 165
FauI CCCGC 2 cut(s) 192, 247
Fnu4HI GCNGC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 280
FspBI CTAG 2 cut(s) 126, 284
GlaI GCGC 4 cut(s) 228, 289, 306, 327
GluI GCNGC 1 cut(s) 280
HaeII RGCGCY 1 cut(s) 308
HapII CCGG 1 cut(s) 376
HgaI GACGC 1 cut(s) 304
HhaI GCGC 4 cut(s) 229, 290, 307, 328
Hin1I GRCGYC 1 cut(s) 296
Hin6I GCGC 4 cut(s) 227, 288, 305, 326
HinP1I GCGC 4 cut(s) 227, 288, 305, 326
HinfI GANTC 3 cut(s) 146, 237, 268
HpaII CCGG 1 cut(s) 376
HphI GGTGA 1 cut(s) 364
Hpy166II GTNNAC 1 cut(s) 263
Hpy8I GTNNAC 1 cut(s) 263
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 2 cut(s) 25, 196
HpyCH4V TGCA 3 cut(s) 279, 312, 321
HpyF10VI GCNNNNNNNGC 6 cut(s) 255, 285, 304, 318, 323, 332
HpyF3I CTNAG 3 cut(s) 266, 365, 397
Hsp92I GRCGYC 1 cut(s) 296
HspAI GCGC 4 cut(s) 227, 288, 305, 326
LpnPI CCDG 3 cut(s) 45, 128, 389
Lsp1109I GCAGC 1 cut(s) 291
MaeI CTAG 2 cut(s) 126, 284
MaeIII GTNAC 1 cut(s) 389
MboII GAAGA 1 cut(s) 3
MluCI AATT 2 cut(s) 76, 129
MlyI GAGTC 3 cut(s) 155, 231, 277
MnlI CCTC 3 cut(s) 244, 356, 395
MseI TTAA 3 cut(s) 219, 233, 406
MspCI CTTAAG 1 cut(s) 232
MspI CCGG 1 cut(s) 376
MspR9I CCNGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 227
MwoI GCNNNNNNNGC 6 cut(s) 255, 285, 304, 318, 323, 332
NciI CCSGG 1 cut(s) 376
NlaIV GGNNCC 1 cut(s) 181
NspV TTCGAA 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 374
PkrI GCNGC 1 cut(s) 281
PleI GAGTC 3 cut(s) 154, 231, 276
PpsI GAGTC 3 cut(s) 154, 231, 276
PspN4I GGNNCC 1 cut(s) 181
PspPI GGNCC 1 cut(s) 179
SaqAI TTAA 3 cut(s) 219, 233, 406
SatI GCNGC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 179
SchI GAGTC 3 cut(s) 155, 231, 277
ScrFI CCNGG 1 cut(s) 376
SetI ASST 3 cut(s) 248, 354, 362
SfuI TTCGAA 1 cut(s) 110
SinI GGWCC 1 cut(s) 179
SmlI CTYRAG 2 cut(s) 232, 347
SmoI CTYRAG 2 cut(s) 232, 347
Sse9I AATT 2 cut(s) 76, 129
SsiI CCGC 2 cut(s) 185, 254
SspI AATATT 1 cut(s) 115
SspMI CTAG 2 cut(s) 126, 284
StyD4I CCNGG 1 cut(s) 374
StyI CCWWGG 1 cut(s) 283
TaaI ACNGT 2 cut(s) 25, 196
TaqI TCGA 1 cut(s) 110
TasI AATT 2 cut(s) 76, 129
Tru1I TTAA 3 cut(s) 219, 233, 406
Tru9I TTAA 3 cut(s) 219, 233, 406
TscAI CASTG 1 cut(s) 201
TseI GCWGC 1 cut(s) 279
TspRI CASTG 1 cut(s) 201
Vha464I CTTAAG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 179
XagI CCTNNNNNAGG 1 cut(s) 364
XmaJI CCTAGG 1 cut(s) 283
XspI CTAG 2 cut(s) 126, 284
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.