Rroxscaffold_5G00338000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000147
Physical Location & Seq
Forward (+)
6220494 .. 6221085
592 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00338000.1

Sequence Viewer

Length: 384 bp
ATGGTCACGCGATTTTCTCATTCTTCTTTTTGTCATGTCGATGTCTCTTTTGTGGATGCTGCAAGGAATCTAGATGAGGCTGTTAATCCGTCCCATTCCCGACCCGAGTTCGGTGGATGCTACTTCCTCACCCGTTATTTCGGTTCTGTTCCCGATGATGATTTGGCAGCGGATGAGGATCTCGACACTAATTTAGAGAATGAAGAACTTGAGGAAGATGTTGATGTTGTGGAGGTCGATTCGACTCCTCTTATGTTTCGCTATACGTATCTCGCTCCTGAATGGGAGAATTATCTTGTTCCTTCTTGTAGTCCCGGAAAAAGAGGTAGAGACAACTTAGAGCTTTTGGATGTAGAACCTTCTTCCTCTAATGTCCCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.34

Weight (kDa)

4.15

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 10
AciI CCGC 1 cut(s) 170
AclWI GGATC 1 cut(s) 186
AfiI CCNNNNNNNGG 1 cut(s) 110
AluBI AGCT 1 cut(s) 343
AluI AGCT 1 cut(s) 343
Alw26I GTCTC 2 cut(s) 49, 324
AlwI GGATC 1 cut(s) 186
Ama87I CYCGRG 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 59, 167
AsuC2I CCSGG 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 104
BbvI GCAGC 2 cut(s) 46, 179
BcnI CCSGG 1 cut(s) 315
BcoDI GTCTC 2 cut(s) 49, 324
BfaI CTAG 1 cut(s) 71
BisI GCNGC 2 cut(s) 60, 168
BlsI GCNGC 2 cut(s) 61, 169
Bme1390I CCNGG 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 104
BmrFI CCNGG 1 cut(s) 315
BmsI GCATC 2 cut(s) 46, 107
BpuEI CTTGAG 1 cut(s) 230
BpuMI CCSGG 1 cut(s) 315
BsaAI YACGTR 1 cut(s) 267
BsaBI GATNNNNATC 1 cut(s) 177
Bsc4I CCNNNNNNNGG 1 cut(s) 110
Bse8I GATNNNNATC 1 cut(s) 177
BseGI GGATG 4 cut(s) 61, 122, 178, 355
BseJI GATNNNNATC 1 cut(s) 177
BseLI CCNNNNNNNGG 1 cut(s) 110
BseRI GAGGAG 1 cut(s) 237
BseXI GCAGC 2 cut(s) 46, 179
Bsh1236I CGCG 1 cut(s) 10
BsiHKCI CYCGRG 1 cut(s) 104
BsiSI CCGG 1 cut(s) 315
BslFI GGGAC 3 cut(s) 76, 297, 359
BslI CCNNNNNNNGG 1 cut(s) 110
BsmAI GTCTC 2 cut(s) 49, 324
BsmFI GGGAC 3 cut(s) 76, 297, 359
BsoBI CYCGRG 1 cut(s) 104
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 1 cut(s) 170
BspFNI CGCG 1 cut(s) 10
BspPI GGATC 1 cut(s) 186
BssMI GATC 1 cut(s) 178
BstBAI YACGTR 1 cut(s) 267
BstDEI CTNAG 1 cut(s) 337
BstF5I GGATG 4 cut(s) 61, 122, 178, 355
BstFNI CGCG 1 cut(s) 10
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 2 cut(s) 49, 324
BstMBI GATC 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 313
BstSNI TACGTA 1 cut(s) 267
BstUI CGCG 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 46, 179
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BtsCI GGATG 4 cut(s) 61, 122, 178, 355
CviAII CATG 1 cut(s) 35
CviJI RGCY 2 cut(s) 80, 343
CviKI_1 RGCY 2 cut(s) 80, 343
DdeI CTNAG 1 cut(s) 337
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eco105I TACGTA 1 cut(s) 267
Eco88I CYCGRG 1 cut(s) 104
FaeI CATG 1 cut(s) 38
FaiI YATR 3 cut(s) 36, 254, 264
FaqI GGGAC 3 cut(s) 76, 297, 359
FatI CATG 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 60, 168
FokI GGATG 4 cut(s) 68, 129, 185, 362
Fsp4HI GCNGC 2 cut(s) 60, 168
FspBI CTAG 1 cut(s) 71
GluI GCNGC 2 cut(s) 60, 168
HapII CCGG 1 cut(s) 315
Hin1II CATG 1 cut(s) 38
HinfI GANTC 3 cut(s) 67, 239, 244
HpaII CCGG 1 cut(s) 315
HphI GGTGA 1 cut(s) 121
Hpy188III TCNNGA 5 cut(s) 71, 99, 152, 182, 278
HpyAV CCTTC 2 cut(s) 312, 369
HpyCH4IV ACGT 1 cut(s) 266
HpyCH4V TGCA 1 cut(s) 62
HpyF3I CTNAG 1 cut(s) 337
HpySE526I ACGT 1 cut(s) 266
Hsp92II CATG 1 cut(s) 38
Kzo9I GATC 1 cut(s) 178
LmnI GCTCC 1 cut(s) 280
LpnPI CCDG 2 cut(s) 291, 328
Lsp1109I GCAGC 2 cut(s) 46, 179
LweI GCATC 2 cut(s) 46, 107
MaeI CTAG 1 cut(s) 71
MaeII ACGT 1 cut(s) 266
MaeIII GTNAC 1 cut(s) 4
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 4 cut(s) 15, 215, 227, 354
MflI RGATCY 1 cut(s) 178
MluCI AATT 2 cut(s) 190, 289
MlyI GAGTC 1 cut(s) 238
MnlI CCTC 8 cut(s) 70, 137, 169, 205, 226, 258, 317, 376
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 1 cut(s) 315
MspR9I CCNGG 1 cut(s) 315
MvnI CGCG 1 cut(s) 10
NciI CCSGG 1 cut(s) 315
NdeII GATC 1 cut(s) 178
NlaIII CATG 1 cut(s) 38
NmuCI GTSAC 1 cut(s) 4
PfeI GAWTC 2 cut(s) 67, 239
PfoI TCCNGGA 1 cut(s) 313
PkrI GCNGC 2 cut(s) 61, 169
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
Ppu21I YACGTR 1 cut(s) 267
PsuI RGATCY 1 cut(s) 178
RseI CAYNNNNRTG 1 cut(s) 39
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 2 cut(s) 60, 168
Sau3AI GATC 1 cut(s) 178
SchI GAGTC 1 cut(s) 238
ScrFI CCNGG 1 cut(s) 315
SetI ASST 5 cut(s) 237, 269, 328, 345, 361
SfaNI GCATC 2 cut(s) 46, 107
SmiMI CAYNNNNRTG 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
SnaBI TACGTA 1 cut(s) 267
Sse9I AATT 2 cut(s) 190, 289
SsiI CCGC 1 cut(s) 170
SspMI CTAG 1 cut(s) 71
StyD4I CCNGG 1 cut(s) 313
TaiI ACGT 1 cut(s) 269
TaqI TCGA 4 cut(s) 39, 183, 237, 242
TasI AATT 2 cut(s) 190, 289
TfiI GAWTC 2 cut(s) 67, 239
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TseFI GTSAC 1 cut(s) 4
TseI GCWGC 2 cut(s) 59, 167
Tsp45I GTSAC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 216
TspGWI ACGGA 1 cut(s) 78
XbaI TCTAGA 1 cut(s) 70
XspI CTAG 1 cut(s) 71
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.