Rh7CG474600

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000147
Physical Location & Seq
Forward (+)
63702453 .. 63706026
3574 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG474600.1

Sequence Viewer

Length: 969 bp
ATGAGGCTGCTCTCGTGGAATTGCCAGGGTTTGGGTGCTTCCCTGACAGGAAAGCATCTCAAACGGTTGTGCAAAACCCAAAATCCTGACATCTTGTTTTTGATGGAAACTCGTCAATCGGAGGATATAATTAGGTGTTGGAAACGCAGGCTGAAGTTCCCAAACCACTATGTTGTTAACCCCGTCGGTACTGGAGGCGGATTGGCTCTCTTCTGGGGTGATTCGGTTCAACTCAATATTATAGATAAGTCTCCCAATTTTGTGGATACACATGTTTCCTTTGTTTCTGAAGCTTTTGTGTGTAAAATCACTTGGTTGTATGGTATCCCTCATGAAAATGCAAAGGCGACCTTTTGGCGCTCCATGTATAACAGATTTGGTCCCAATACTCAACCATGGATTGTTATTGGGGATTGCAATGAGGTTATCAGTCCTTCTGAGAAATGGGGAGGTGCACCACCAGACCTCTGGCGTATGAATTTATTCATGGACTTCATCAACAACGCTCAACTAAAGGATTTGCATTTTCAAGGGCCAAACTACACTTGGTTTGCTATCCGTCATGGCCGGGTGTATATAAAAGAACGATTGGATCGAGCTTTGGGCAATTTAAGCTGGTCTGCAACACAATCACGCTCCCAAGTGTTCCATCTTCCAAAAGTTGGCTCTGATCATAGGCCAATACTACTGGACACCCAACCTCATGAAACTAAAGGTCCTCCCATTTTCAGGTTTGAGCATTACTGGACTACGCATGAGCACTTCACTGCTTTAATTGCTGCTGTTTGGAAGACAGATACAGGCTCTGCTGCTATGCCTGCTTGGTCTCAAAATTTGAAAAATTGCAAACGCTCTATTTTGTCTTGCACCGATGTTGGTGTTTTTATAACTCCAACACACCTGATCCGCTTTCCATTGCCCTCTCTGCTCATAAAGCTGCCGAAGAGTTTCTTGGTGCCCAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos Exo_endo_phos_2

Protein Analysis

322

Amino Acids

36.98

Weight (kDa)

9.56

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 225 6e-13 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 887
AccB1I GGYRCC 1 cut(s) 955
AccB7I CCANNNNNTGG 2 cut(s) 31, 662
AciI CCGC 2 cut(s) 198, 907
AclWI GGATC 2 cut(s) 600, 898
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 2 cut(s) 478, 832
AcuI CTGAAG 2 cut(s) 173, 309
AfaI GTAC 1 cut(s) 190
AfiI CCNNNNNNNGG 3 cut(s) 31, 662, 729
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 3 cut(s) 230, 530, 838
AjnI CCWGG 1 cut(s) 24
AjuI GAANNNNNNNTTGG 2 cut(s) 935, 967
AluBI AGCT 4 cut(s) 293, 599, 615, 937
AluI AGCT 4 cut(s) 293, 599, 615, 937
Alw21I GWGCWC 2 cut(s) 457, 762
Alw26I GTCTC 2 cut(s) 255, 831
Alw44I GTGCAC 1 cut(s) 453
AlwI GGATC 2 cut(s) 600, 898
AlwNI CAGNNNCTG 1 cut(s) 806
AoxI GGCC 3 cut(s) 533, 565, 677
ApaLI GTGCAC 1 cut(s) 453
ApeKI GCWGC 4 cut(s) 7, 779, 809, 937
ApoI RAATTY 2 cut(s) 478, 832
Asp700I GAANNNNTTC 2 cut(s) 482, 947
AspLEI GCGC 1 cut(s) 360
AspS9I GGNCC 3 cut(s) 380, 533, 716
AsuC2I CCSGG 1 cut(s) 569
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 2 cut(s) 380, 716
BaeGI GKGCMC 2 cut(s) 457, 960
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BanI GGYRCC 1 cut(s) 955
BauI CACGAG 1 cut(s) 13
BbsI GAAGAC 1 cut(s) 797
Bbv12I GWGCWC 2 cut(s) 457, 762
BbvI GCAGC 3 cut(s) 766, 796, 924
BccI CCATC 2 cut(s) 97, 657
BciT130I CCWGG 1 cut(s) 26
BciVI GTATCC 2 cut(s) 259, 335
BclI TGATCA 1 cut(s) 670
BcnI CCSGG 1 cut(s) 569
BcoDI GTCTC 2 cut(s) 255, 831
BfoI RGCGCY 1 cut(s) 361
BfuI GTATCC 2 cut(s) 259, 335
BisI GCNGC 4 cut(s) 8, 780, 810, 938
BlsI GCNGC 4 cut(s) 9, 781, 811, 939
Bme1390I CCNGG 2 cut(s) 26, 569
Bme18I GGWCC 2 cut(s) 380, 716
BmgT120I GGNCC 3 cut(s) 380, 533, 716
BmiI GGNNCC 2 cut(s) 382, 957
BmrFI CCNGG 2 cut(s) 26, 569
BmsI GCATC 1 cut(s) 64
BpiI GAAGAC 1 cut(s) 797
BpmI CTGGAG 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 569
BsaI GGTCTC 1 cut(s) 831
BsaJI CCNNGG 2 cut(s) 25, 395
Bsc4I CCNNNNNNNGG 3 cut(s) 31, 662, 729
Bse1I ACTGG 3 cut(s) 196, 693, 749
Bse3DI GCAATG 2 cut(s) 424, 914
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 2 cut(s) 25, 395
BseLI CCNNNNNNNGG 3 cut(s) 31, 662, 729
BseMI GCAATG 2 cut(s) 424, 914
BseMII CTCAG 1 cut(s) 429
BseNI ACTGG 3 cut(s) 196, 693, 749
BseSI GKGCMC 2 cut(s) 457, 960
BseXI GCAGC 3 cut(s) 766, 796, 924
BshFI GGCC 3 cut(s) 535, 567, 679
BshNI GGYRCC 1 cut(s) 955
BsiHKAI GWGCWC 2 cut(s) 457, 762
BsiSI CCGG 1 cut(s) 568
BslFI GGGAC 1 cut(s) 366
BslI CCNNNNNNNGG 3 cut(s) 31, 662, 729
BsmAI GTCTC 2 cut(s) 255, 831
BsmFI GGGAC 1 cut(s) 366
BsnI GGCC 3 cut(s) 535, 567, 679
Bso31I GGTCTC 1 cut(s) 831
Bsp1286I GDGCHC 3 cut(s) 457, 762, 960
Bsp143I GATC 3 cut(s) 592, 670, 903
Bsp19I CCATGG 1 cut(s) 395
BspACI CCGC 2 cut(s) 198, 907
BspANI GGCC 3 cut(s) 535, 567, 679
BspCNI CTCAG 1 cut(s) 430
BspHI TCATGA 2 cut(s) 331, 703
BspLI GGNNCC 2 cut(s) 382, 957
BspPI GGATC 2 cut(s) 600, 898
BspT107I GGYRCC 1 cut(s) 955
BspTNI GGTCTC 1 cut(s) 831
BsrDI GCAATG 2 cut(s) 424, 914
BsrI ACTGG 3 cut(s) 196, 693, 749
BssECI CCNNGG 2 cut(s) 25, 395
BssMI GATC 3 cut(s) 592, 670, 903
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 395
Bst2BI CACGAG 1 cut(s) 13
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 66
Bst6I CTCTTC 2 cut(s) 215, 938
BstC8I GCNNGC 2 cut(s) 149, 819
BstDEI CTNAG 1 cut(s) 438
BstDSI CCRYGG 1 cut(s) 395
BstH2I RGCGCY 1 cut(s) 361
BstHHI GCGC 1 cut(s) 360
BstKTI GATC 3 cut(s) 595, 673, 906
BstMAI GTCTC 2 cut(s) 255, 831
BstMBI GATC 3 cut(s) 592, 670, 903
BstMWI GCNNNNNNNGC 5 cut(s) 612, 776, 818, 925, 934
BstNI CCWGG 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 275
BstSCI CCNGG 2 cut(s) 24, 567
BstSLI GKGCMC 2 cut(s) 457, 960
BstV1I GCAGC 3 cut(s) 766, 796, 924
BstV2I GAAGAC 1 cut(s) 797
BstXI CCANNNNNNTGG 2 cut(s) 262, 468
BsuI GTATCC 2 cut(s) 259, 335
BsuRI GGCC 3 cut(s) 535, 567, 679
BtgI CCRYGG 1 cut(s) 395
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 1 cut(s) 765
Cac8I GCNNGC 2 cut(s) 149, 819
CaiI CAGNNNCTG 1 cut(s) 806
CciI TCATGA 2 cut(s) 331, 703
CfoI GCGC 1 cut(s) 360
Cfr13I GGNCC 3 cut(s) 380, 533, 716
Csp6I GTAC 1 cut(s) 189
CviAII CATG 8 cut(s) 272, 332, 364, 396, 487, 563, 704, 755
CviQI GTAC 1 cut(s) 189
DdeI CTNAG 1 cut(s) 438
DpnI GATC 3 cut(s) 594, 672, 905
DpnII GATC 3 cut(s) 592, 670, 903
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 2 cut(s) 215, 938
EarI CTCTTC 2 cut(s) 215, 938
EciI GGCGGA 1 cut(s) 213
Eco130I CCWWGG 1 cut(s) 395
Eco31I GGTCTC 1 cut(s) 831
Eco47I GGWCC 2 cut(s) 380, 716
Eco57I CTGAAG 2 cut(s) 173, 309
EcoO109I RGGNCCY 1 cut(s) 716
EcoRII CCWGG 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 395
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 8 cut(s) 275, 335, 367, 399, 490, 566, 707, 758
FalI AAGNNNNNCTT 4 cut(s) 335, 367, 935, 967
FaqI GGGAC 1 cut(s) 366
FatI CATG 8 cut(s) 271, 331, 363, 395, 486, 562, 703, 754
FbaI TGATCA 1 cut(s) 670
Fnu4HI GCNGC 4 cut(s) 8, 780, 810, 938
Fsp4HI GCNGC 4 cut(s) 8, 780, 810, 938
GlaI GCGC 1 cut(s) 359
GluI GCNGC 4 cut(s) 8, 780, 810, 938
GsuI CTGGAG 1 cut(s) 213
HaeII RGCGCY 1 cut(s) 361
HaeIII GGCC 3 cut(s) 535, 567, 679
HapII CCGG 1 cut(s) 568
HhaI GCGC 1 cut(s) 360
Hin1II CATG 8 cut(s) 275, 335, 367, 399, 490, 566, 707, 758
Hin6I GCGC 1 cut(s) 358
HinP1I GCGC 1 cut(s) 358
HincII GTYRAC 1 cut(s) 178
HindII GTYRAC 1 cut(s) 178
HindIII AAGCTT 1 cut(s) 291
HinfI GANTC 1 cut(s) 221
HpaI GTTAAC 1 cut(s) 178
HpaII CCGG 1 cut(s) 568
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 2 cut(s) 178, 455
Hpy188I TCNGA 4 cut(s) 121, 289, 439, 670
Hpy188III TCNNGA 3 cut(s) 86, 332, 704
Hpy8I GTNNAC 2 cut(s) 178, 455
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 1 cut(s) 444
HpyCH4III ACNGT 1 cut(s) 66
HpyCH4V TGCA 8 cut(s) 72, 341, 417, 455, 523, 623, 846, 867
HpyF10VI GCNNNNNNNGC 5 cut(s) 612, 776, 818, 925, 934
HpyF3I CTNAG 1 cut(s) 438
Hsp92II CATG 8 cut(s) 275, 335, 367, 399, 490, 566, 707, 758
HspAI GCGC 1 cut(s) 358
Ksp22I TGATCA 1 cut(s) 670
KspAI GTTAAC 1 cut(s) 178
Kzo9I GATC 3 cut(s) 592, 670, 903
LmnI GCTCC 2 cut(s) 365, 641
Lsp1109I GCAGC 3 cut(s) 766, 796, 924
LweI GCATC 1 cut(s) 64
MalI GATC 3 cut(s) 594, 672, 905
MboI GATC 3 cut(s) 592, 670, 903
MboII GAAGA 4 cut(s) 202, 644, 802, 955
MhlI GDGCHC 3 cut(s) 457, 762, 960
MluCI AATT 9 cut(s) 19, 129, 256, 478, 607, 774, 832, 841, 964
MmeI TCCRAC 2 cut(s) 119, 917
MnlI CCTC 9 cut(s) 115, 188, 339, 415, 443, 476, 711, 729, 931
MroXI GAANNNNTTC 2 cut(s) 482, 947
MseI TTAA 4 cut(s) 177, 611, 773, 967
MslI CAYNNNNRTG 1 cut(s) 336
MspI CCGG 1 cut(s) 568
MspR9I CCNGG 2 cut(s) 26, 569
MvaI CCWGG 1 cut(s) 26
MwoI GCNNNNNNNGC 5 cut(s) 612, 776, 818, 925, 934
NciI CCSGG 1 cut(s) 569
NcoI CCATGG 1 cut(s) 395
NdeII GATC 3 cut(s) 592, 670, 903
NlaIII CATG 8 cut(s) 275, 335, 367, 399, 490, 566, 707, 758
NlaIV GGNNCC 2 cut(s) 382, 957
NspI RCATGY 1 cut(s) 275
PagI TCATGA 2 cut(s) 331, 703
PciI ACATGT 1 cut(s) 271
PcsI WCGNNNNNNNCGW 1 cut(s) 592
PdmI GAANNNNTTC 2 cut(s) 482, 947
PfeI GAWTC 1 cut(s) 221
PflMI CCANNNNNTGG 2 cut(s) 31, 662
PkrI GCNGC 4 cut(s) 9, 781, 811, 939
PpuMI RGGWCCY 1 cut(s) 716
PscI ACATGT 1 cut(s) 271
PsiI TTATAA 1 cut(s) 887
Psp5II RGGWCCY 1 cut(s) 716
Psp6I CCWGG 1 cut(s) 24
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 2 cut(s) 382, 957
PspPI GGNCC 3 cut(s) 380, 533, 716
PspPPI RGGWCCY 1 cut(s) 716
PstNI CAGNNNCTG 1 cut(s) 806
RsaI GTAC 1 cut(s) 190
RsaNI GTAC 1 cut(s) 189
RseI CAYNNNNRTG 1 cut(s) 336
SaqAI TTAA 4 cut(s) 177, 611, 773, 967
SatI GCNGC 4 cut(s) 8, 780, 810, 938
Sau3AI GATC 3 cut(s) 592, 670, 903
Sau96I GGNCC 3 cut(s) 380, 533, 716
ScrFI CCNGG 2 cut(s) 26, 569
SduI GDGCHC 3 cut(s) 457, 762, 960
SfaNI GCATC 1 cut(s) 64
SinI GGWCC 2 cut(s) 380, 716
SmiMI CAYNNNNRTG 1 cut(s) 336
Sse9I AATT 9 cut(s) 19, 129, 256, 478, 607, 774, 832, 841, 964
SsiI CCGC 2 cut(s) 198, 907
SspI AATATT 1 cut(s) 238
StyD4I CCNGG 2 cut(s) 24, 567
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 1 cut(s) 66
TaqI TCGA 1 cut(s) 595
TasI AATT 9 cut(s) 19, 129, 256, 478, 607, 774, 832, 841, 964
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 4 cut(s) 177, 611, 773, 967
Tru9I TTAA 4 cut(s) 177, 611, 773, 967
TscAI CASTG 1 cut(s) 772
TseI GCWGC 4 cut(s) 7, 779, 809, 937
TspDTI ATGAA 5 cut(s) 348, 475, 484, 491, 720
TspGWI ACGGA 1 cut(s) 548
TspRI CASTG 1 cut(s) 772
Van91I CCANNNNNTGG 2 cut(s) 31, 662
VneI GTGCAC 1 cut(s) 453
VpaK11BI GGWCC 2 cut(s) 380, 716
XapI RAATTY 2 cut(s) 478, 832
XceI RCATGY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 2 cut(s) 465, 543
XmnI GAANNNNTTC 2 cut(s) 482, 947
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.