Rw1G001190

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0000147
Physical Location & Seq
Forward (+)
1848687 .. 1849496
810 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G001190.1

Sequence Viewer

Length: 606 bp
ATGAACCTAGAAGGAGCTATTGATTTGCCTTGGATTTGTTTGGGAGATTTTAATGAGTTCATTTACAACAATTGGCCAAATGGGGGACTAATCAAAATTAGATTGGACCAAATCATTGATACTGATCCTCCAAGTGTGAAAGGACCAAAACCTTTCAAATTTGAGCCTAGTTGGATTGAAGCCCCAGAGTGCGGGGAAGTTATATTGGAAGCCTGGTCTAATCAAATGGGAGACAATTTTGCTCAACAACAGTGGACAACAAATCTCTATCAGTGTAACAAGGCCTTACAGCACTGGAGTAAGAAGTTCTCAAGCAATAGAAGAAGGATTGACTGCAATATTGAGAAGCTTCAAGTTATACAGTCAAGTTTAGATCCGGAAGCTAGGAAGCTTGCTAGCAGTCTCACTGAAGAACTTGCATCCCTTTGGGACAAAGAGGAAAAATATTGGGCTCAGAGATCAAGAATTAAGTGGCTCAAGACAGGGGATTCCAACTCAAGATTTTTCCACCTCACCACCATCCATCGTAGGCAAAGGAATAAGGTATTAAAGTCAAGGATTAATTTCAATTTACCTACTCCAACTTTAGGCCAATCTTCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3

Protein Analysis

201

Amino Acids

23.43

Weight (kDa)

8.8

Isoelectric Point (pI)

55.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 1 cut(s) 192
AclWI GGATC 2 cut(s) 119, 368
AcoI YGGCCR 1 cut(s) 74
AcsI RAATTY 1 cut(s) 158
AcuI CTGAAG 1 cut(s) 429
AfiI CCNNNNNNNGG 3 cut(s) 83, 191, 587
AgsI TTSAA 4 cut(s) 157, 179, 353, 568
AjnI CCWGG 1 cut(s) 212
AluBI AGCT 4 cut(s) 17, 349, 383, 391
AluI AGCT 4 cut(s) 17, 349, 383, 391
Alw26I GTCTC 2 cut(s) 225, 407
AlwI GGATC 2 cut(s) 119, 368
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 3 cut(s) 74, 282, 589
ApoI RAATTY 1 cut(s) 158
AseI ATTAAT 1 cut(s) 561
AspS9I GGNCC 2 cut(s) 106, 143
AsuHPI GGTGA 1 cut(s) 505
AsuNHI GCTAGC 1 cut(s) 395
AvaII GGWCC 2 cut(s) 106, 143
BalI TGGCCA 1 cut(s) 76
BanII GRGCYC 1 cut(s) 454
BccI CCATC 2 cut(s) 527, 531
BciT130I CCWGG 1 cut(s) 214
BcoDI GTCTC 2 cut(s) 225, 407
BfaI CTAG 4 cut(s) 8, 168, 384, 396
Bme1390I CCNGG 1 cut(s) 214
Bme18I GGWCC 2 cut(s) 106, 143
BmgT120I GGNCC 2 cut(s) 106, 143
BmrFI CCNGG 1 cut(s) 214
BmsI GCATC 1 cut(s) 428
BmtI GCTAGC 1 cut(s) 399
BpmI CTGGAG 1 cut(s) 316
BpuEI CTTGAG 3 cut(s) 295, 461, 481
BsaBI GATNNNNATC 1 cut(s) 123
BsaJI CCNNGG 1 cut(s) 29
BsaWI WCCGGW 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 112, 142
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 191, 587
Bse1I ACTGG 1 cut(s) 299
Bse8I GATNNNNATC 1 cut(s) 123
BseAI TCCGGA 1 cut(s) 376
BseBI CCWGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 29
BseGI GGATG 2 cut(s) 419, 519
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 3 cut(s) 83, 191, 587
BseMII CTCAG 1 cut(s) 467
BseNI ACTGG 1 cut(s) 299
BshFI GGCC 3 cut(s) 76, 284, 591
BsiSI CCGG 1 cut(s) 377
BslFI GGGAC 2 cut(s) 99, 443
BslI CCNNNNNNNGG 3 cut(s) 83, 191, 587
BsmAI GTCTC 2 cut(s) 225, 407
BsmFI GGGAC 2 cut(s) 99, 443
BsnI GGCC 3 cut(s) 76, 284, 591
Bsp1286I GDGCHC 1 cut(s) 454
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 3 cut(s) 124, 373, 458
BspACI CCGC 1 cut(s) 192
BspANI GGCC 3 cut(s) 76, 284, 591
BspCNI CTCAG 1 cut(s) 466
BspEI TCCGGA 1 cut(s) 376
BspOI GCTAGC 1 cut(s) 399
BspPI GGATC 2 cut(s) 119, 368
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 1 cut(s) 29
BssMI GATC 3 cut(s) 124, 373, 458
BssT1I CCWWGG 1 cut(s) 29
Bst2UI CCWGG 1 cut(s) 214
Bst4CI ACNGT 2 cut(s) 252, 363
BstC8I GCNNGC 2 cut(s) 393, 397
BstDEI CTNAG 1 cut(s) 453
BstF5I GGATG 2 cut(s) 419, 519
BstKTI GATC 3 cut(s) 127, 376, 461
BstMAI GTCTC 2 cut(s) 225, 407
BstMBI GATC 3 cut(s) 124, 373, 458
BstNI CCWGG 1 cut(s) 214
BstSCI CCNGG 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 373
BstYI RGATCY 1 cut(s) 373
BsuRI GGCC 3 cut(s) 76, 284, 591
BtsCI GGATG 2 cut(s) 419, 519
BtsIMutI CAGTG 4 cut(s) 257, 278, 292, 405
Cac8I GCNNGC 2 cut(s) 393, 397
Cfr13I GGNCC 2 cut(s) 106, 143
CspCI CAANNNNNGTGG 2 cut(s) 233, 268
CviAII CATG 1 cut(s) 600
DdeI CTNAG 1 cut(s) 453
DpnI GATC 3 cut(s) 126, 375, 460
DpnII GATC 3 cut(s) 124, 373, 458
EaeI YGGCCR 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 29
Eco147I AGGCCT 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 454
Eco47I GGWCC 2 cut(s) 106, 143
Eco57I CTGAAG 1 cut(s) 429
EcoRII CCWGG 1 cut(s) 212
EcoT14I CCWWGG 1 cut(s) 29
EcoT38I GRGCYC 1 cut(s) 454
ErhI CCWWGG 1 cut(s) 29
FaeI CATG 1 cut(s) 603
FaiI YATR 3 cut(s) 203, 359, 601
FaqI GGGAC 2 cut(s) 99, 443
FatI CATG 1 cut(s) 599
FauI CCCGC 1 cut(s) 185
FokI GGATG 2 cut(s) 406, 506
FriOI GRGCYC 1 cut(s) 454
FspBI CTAG 4 cut(s) 8, 168, 384, 396
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 3 cut(s) 76, 284, 591
HapII CCGG 1 cut(s) 377
Hin1II CATG 1 cut(s) 603
HindIII AAGCTT 2 cut(s) 347, 389
HinfI GANTC 1 cut(s) 488
HpaII CCGG 1 cut(s) 377
HphI GGTGA 1 cut(s) 505
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 1 cut(s) 456
Hpy188III TCNNGA 4 cut(s) 377, 462, 478, 498
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 2 cut(s) 5, 318
HpyCH4III ACNGT 2 cut(s) 252, 363
HpyCH4V TGCA 2 cut(s) 336, 419
HpyF3I CTNAG 1 cut(s) 453
Hsp92II CATG 1 cut(s) 603
Kpn2I TCCGGA 1 cut(s) 376
Kzo9I GATC 3 cut(s) 124, 373, 458
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 6 cut(s) 198, 199, 226, 280, 390, 468
LweI GCATC 1 cut(s) 428
MaeI CTAG 4 cut(s) 8, 168, 384, 396
MaeIII GTNAC 1 cut(s) 275
MalI GATC 3 cut(s) 126, 375, 460
MboI GATC 3 cut(s) 124, 373, 458
MboII GAAGA 3 cut(s) 333, 422, 588
MfeI CAATTG 1 cut(s) 70
MflI RGATCY 1 cut(s) 373
MhlI GDGCHC 1 cut(s) 454
MlsI TGGCCA 1 cut(s) 76
MluCI AATT 7 cut(s) 70, 96, 158, 235, 465, 562, 568
MluNI TGGCCA 1 cut(s) 76
MmeI TCCRAC 3 cut(s) 152, 516, 605
MnlI CCTC 3 cut(s) 138, 430, 521
Mox20I TGGCCA 1 cut(s) 76
MroI TCCGGA 1 cut(s) 376
MscI TGGCCA 1 cut(s) 76
MseI TTAA 4 cut(s) 51, 468, 548, 561
Msp20I TGGCCA 1 cut(s) 76
MspI CCGG 1 cut(s) 377
MspR9I CCNGG 1 cut(s) 214
MunI CAATTG 1 cut(s) 70
MvaI CCWGG 1 cut(s) 214
NdeII GATC 3 cut(s) 124, 373, 458
NheI GCTAGC 1 cut(s) 395
NlaIII CATG 1 cut(s) 603
PceI AGGCCT 1 cut(s) 284
PfeI GAWTC 1 cut(s) 488
PshBI ATTAAT 1 cut(s) 561
Psp6I CCWGG 1 cut(s) 212
PspGI CCWGG 1 cut(s) 212
PspPI GGNCC 2 cut(s) 106, 143
PsuI RGATCY 1 cut(s) 373
SaqAI TTAA 4 cut(s) 51, 468, 548, 561
Sau3AI GATC 3 cut(s) 124, 373, 458
Sau96I GGNCC 2 cut(s) 106, 143
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 1 cut(s) 454
SetI ASST 9 cut(s) 9, 19, 154, 351, 385, 393, 513, 546, 577
SfaNI GCATC 1 cut(s) 428
SinI GGWCC 2 cut(s) 106, 143
SmlI CTYRAG 3 cut(s) 310, 476, 496
SmoI CTYRAG 3 cut(s) 310, 476, 496
Sse9I AATT 7 cut(s) 70, 96, 158, 235, 465, 562, 568
SseBI AGGCCT 1 cut(s) 284
SsiI CCGC 1 cut(s) 192
SspI AATATT 2 cut(s) 340, 446
SspMI CTAG 4 cut(s) 8, 168, 384, 396
StuI AGGCCT 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 212
StyI CCWWGG 1 cut(s) 29
TaaI ACNGT 2 cut(s) 252, 363
TasI AATT 7 cut(s) 70, 96, 158, 235, 465, 562, 568
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 4 cut(s) 51, 468, 548, 561
Tru9I TTAA 4 cut(s) 51, 468, 548, 561
TscAI CASTG 4 cut(s) 257, 278, 299, 412
TspDTI ATGAA 3 cut(s) 17, 49, 588
TspRI CASTG 4 cut(s) 257, 278, 299, 412
VpaK11BI GGWCC 2 cut(s) 106, 143
VspI ATTAAT 1 cut(s) 561
XapI RAATTY 1 cut(s) 158
XspI CTAG 4 cut(s) 8, 168, 384, 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.