Rmu_co8332453.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8332453.1
OG0000147
Physical Location & Seq
Forward (+)
95 .. 980
886 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8332453.1_g000001.1.cds

Sequence Viewer

Length: 722 bp
atgtttacatgggaaaataggaggggtgacacaggtgttctcatccgcgagagacttgacagggcaatcggcaatgctaagtggttctgcacatggccagactcaatggttatccatgaaccaagagtgggctcggatcactgccctctggtagtttattctcacccacgtgtaaagaaaggccccaagatttttcactttgaagcttcttgggcagatgatccagagtgtgaagaaatcatcaataattgttggaagaaagatacctcctcggacccattccaactttgggactctaacctaaaggcctgcaaaaggaacctgtccaagtggagcaaaatgaaatttccaaacaataaggcggtaattgatgccttgaattgggagatcagctgcattcaagaggaggctatgtcaacagattcaaaagtaagagaaaaagagttgctcactgatcttgaggcagcctggaaacttgaggaatgctattggaagcaaagggacttatacacctcctctggtcccagagattgggggaatgttcttgacaatgtggagagtcagatcaccagtgagcagaattctatcctcaccaagcctttctccatggaggaaattcgtctggctacaaagcaacttggcaatttcaaagccccgggtcctgatggatttccaggtcctttctattgcaattactgggatactatgtgcgatactattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

240

Amino Acids

27.9

Weight (kDa)

5.38

Isoelectric Point (pI)

41.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 531
AccII CGCG 1 cut(s) 48
AciI CCGC 2 cut(s) 46, 362
AclWI GGATC 2 cut(s) 144, 215
AcoI YGGCCR 1 cut(s) 95
AcsI RAATTY 3 cut(s) 344, 580, 615
AcvI CACGTG 1 cut(s) 170
AfiI CCNNNNNNNGG 5 cut(s) 128, 289, 315, 381, 531
AflIII ACRYGT 1 cut(s) 169
AgsI TTSAA 5 cut(s) 203, 379, 401, 426, 649
AjnI CCWGG 2 cut(s) 467, 673
AleI CACNNNNGTG 1 cut(s) 168
AluBI AGCT 2 cut(s) 206, 393
AluI AGCT 2 cut(s) 206, 393
Alw26I GTCTC 1 cut(s) 46
AlwI GGATC 2 cut(s) 144, 215
Ama87I CYCGRG 1 cut(s) 655
AoxI GGCC 3 cut(s) 95, 181, 306
ApeKI GCWGC 2 cut(s) 393, 464
ApoI RAATTY 3 cut(s) 344, 580, 615
AspS9I GGNCC 5 cut(s) 182, 274, 521, 659, 677
AsuC2I CCSGG 2 cut(s) 656, 657
AsuHPI GGTGA 4 cut(s) 38, 155, 559, 583
AvaI CYCGRG 1 cut(s) 655
AvaII GGWCC 4 cut(s) 274, 521, 659, 677
BalI TGGCCA 1 cut(s) 97
BanII GRGCYC 1 cut(s) 134
BbrPI CACGTG 1 cut(s) 170
BbvI GCAGC 2 cut(s) 380, 476
BccI CCATC 1 cut(s) 659
BciT130I CCWGG 2 cut(s) 469, 675
BciVI GTATCC 1 cut(s) 694
BcnI CCSGG 2 cut(s) 656, 657
BcoDI GTCTC 1 cut(s) 46
BfuI GTATCC 1 cut(s) 694
BisI GCNGC 2 cut(s) 394, 465
BlsI GCNGC 2 cut(s) 395, 466
Bme1390I CCNGG 4 cut(s) 469, 656, 657, 675
Bme18I GGWCC 4 cut(s) 274, 521, 659, 677
BmeT110I CYCGRG 1 cut(s) 655
BmgT120I GGNCC 5 cut(s) 182, 274, 521, 659, 677
BmiI GGNNCC 5 cut(s) 184, 276, 320, 523, 660
BmrFI CCNGG 4 cut(s) 469, 656, 657, 675
BmrI ACTGGG 1 cut(s) 706
BmsI GCATC 1 cut(s) 361
BmuI ACTGGG 1 cut(s) 706
BpuEI CTTGAG 2 cut(s) 479, 497
BpuMI CCSGG 2 cut(s) 656, 657
BsaAI YACGTR 1 cut(s) 170
BsaJI CCNNGG 4 cut(s) 270, 606, 654, 655
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 5 cut(s) 128, 289, 315, 381, 531
Bse1I ACTGG 2 cut(s) 570, 701
Bse3DI GCAATG 1 cut(s) 79
BseBI CCWGG 2 cut(s) 469, 675
BseDI CCNNGG 4 cut(s) 270, 606, 654, 655
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 5 cut(s) 128, 289, 315, 381, 531
BseMI GCAATG 1 cut(s) 79
BseNI ACTGG 2 cut(s) 570, 701
BseRI GAGGAG 3 cut(s) 259, 419, 505
BseXI GCAGC 2 cut(s) 380, 476
BsgI GTGCAG 1 cut(s) 73
Bsh1236I CGCG 1 cut(s) 48
BshFI GGCC 3 cut(s) 97, 183, 308
BsiHKCI CYCGRG 1 cut(s) 655
BsiSI CCGG 1 cut(s) 656
BslFI GGGAC 3 cut(s) 305, 507, 515
BslI CCNNNNNNNGG 5 cut(s) 128, 289, 315, 381, 531
BsmAI GTCTC 1 cut(s) 46
BsmFI GGGAC 3 cut(s) 305, 507, 515
BsmI GAATGC 2 cut(s) 396, 488
BsnI GGCC 3 cut(s) 97, 183, 308
BsoBI CYCGRG 1 cut(s) 655
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 5 cut(s) 136, 220, 387, 454, 564
Bsp19I CCATGG 1 cut(s) 606
BspACI CCGC 2 cut(s) 46, 362
BspANI GGCC 3 cut(s) 97, 183, 308
BspFNI CGCG 1 cut(s) 48
BspLI GGNNCC 5 cut(s) 184, 276, 320, 523, 660
BspPI GGATC 2 cut(s) 144, 215
BsrDI GCAATG 1 cut(s) 79
BsrI ACTGG 2 cut(s) 570, 701
BssECI CCNNGG 4 cut(s) 270, 606, 654, 655
BssMI GATC 5 cut(s) 136, 220, 387, 454, 564
BssT1I CCWWGG 1 cut(s) 606
Bst2UI CCWGG 2 cut(s) 469, 675
BstBAI YACGTR 1 cut(s) 170
BstC8I GCNNGC 1 cut(s) 310
BstDEI CTNAG 1 cut(s) 78
BstDSI CCRYGG 1 cut(s) 606
BstENI CCTNNNNNAGG 1 cut(s) 313
BstF5I GGATG 1 cut(s) 42
BstFNI CGCG 1 cut(s) 48
BstKTI GATC 5 cut(s) 139, 223, 390, 457, 567
BstMAI GTCTC 1 cut(s) 46
BstMBI GATC 5 cut(s) 136, 220, 387, 454, 564
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 2 cut(s) 469, 675
BstSCI CCNGG 4 cut(s) 467, 654, 655, 673
BstUI CGCG 1 cut(s) 48
BstV1I GCAGC 2 cut(s) 380, 476
BsuI GTATCC 1 cut(s) 694
BsuRI GGCC 3 cut(s) 97, 183, 308
BtgI CCRYGG 1 cut(s) 606
BtsCI GGATG 1 cut(s) 42
BtsI GCAGTG 1 cut(s) 139
BtsIMutI CAGTG 3 cut(s) 139, 450, 577
Cac8I GCNNGC 1 cut(s) 310
Cfr13I GGNCC 5 cut(s) 182, 274, 521, 659, 677
Cfr9I CCCGGG 1 cut(s) 655
CviAII CATG 4 cut(s) 9, 93, 116, 607
DdeI CTNAG 1 cut(s) 78
DpnI GATC 5 cut(s) 138, 222, 389, 456, 566
DpnII GATC 5 cut(s) 136, 220, 387, 454, 564
EaeI YGGCCR 1 cut(s) 95
Eco130I CCWWGG 1 cut(s) 606
Eco147I AGGCCT 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 134
Eco47I GGWCC 4 cut(s) 274, 521, 659, 677
Eco72I CACGTG 1 cut(s) 170
Eco88I CYCGRG 1 cut(s) 655
EcoNI CCTNNNNNAGG 1 cut(s) 313
EcoO109I RGGNCCY 3 cut(s) 182, 659, 677
EcoRI GAATTC 1 cut(s) 580
EcoRII CCWGG 2 cut(s) 467, 673
EcoT14I CCWWGG 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 606
FaeI CATG 4 cut(s) 12, 96, 119, 610
FaiI YATR 7 cut(s) 10, 94, 117, 413, 508, 608, 707
FaqI GGGAC 3 cut(s) 305, 507, 515
FatI CATG 4 cut(s) 8, 92, 115, 606
Fnu4HI GCNGC 2 cut(s) 394, 465
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 2 cut(s) 394, 465
GluI GCNGC 2 cut(s) 394, 465
HaeIII GGCC 3 cut(s) 97, 183, 308
HapII CCGG 1 cut(s) 656
Hin1II CATG 4 cut(s) 12, 96, 119, 610
HincII GTYRAC 1 cut(s) 417
HindII GTYRAC 1 cut(s) 417
HindIII AAGCTT 1 cut(s) 204
HinfI GANTC 4 cut(s) 101, 293, 422, 559
HpaII CCGG 1 cut(s) 656
HphI GGTGA 4 cut(s) 38, 155, 559, 583
Hpy166II GTNNAC 2 cut(s) 6, 417
Hpy188I TCNGA 3 cut(s) 136, 274, 564
Hpy188III TCNNGA 5 cut(s) 224, 401, 458, 545, 662
Hpy8I GTNNAC 2 cut(s) 6, 417
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 90, 312, 396, 690
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 78
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 4 cut(s) 12, 96, 119, 610
Kzo9I GATC 5 cut(s) 136, 220, 387, 454, 564
LmnI GCTCC 1 cut(s) 333
Lsp1109I GCAGC 2 cut(s) 380, 476
LweI GCATC 1 cut(s) 361
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 26
MalI GATC 5 cut(s) 138, 222, 389, 456, 566
MboI GATC 5 cut(s) 136, 220, 387, 454, 564
MboII GAAGA 2 cut(s) 245, 268
MhlI GDGCHC 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 97
MluCI AATT 8 cut(s) 247, 344, 366, 379, 580, 615, 643, 691
MluNI TGGCCA 1 cut(s) 97
MlyI GAGTC 3 cut(s) 95, 287, 568
MmeI TCCRAC 2 cut(s) 233, 307
Mox20I TGGCCA 1 cut(s) 97
MscI TGGCCA 1 cut(s) 97
MseI TTAA 1 cut(s) 720
MslI CAYNNNNRTG 1 cut(s) 168
Msp20I TGGCCA 1 cut(s) 97
MspA1I CMGCKG 1 cut(s) 393
MspI CCGG 1 cut(s) 656
MspR9I CCNGG 4 cut(s) 469, 656, 657, 675
Mva1269I GAATGC 2 cut(s) 396, 488
MvaI CCWGG 2 cut(s) 469, 675
MvnI CGCG 1 cut(s) 48
MwoI GCNNNNNNNGC 1 cut(s) 212
NciI CCSGG 2 cut(s) 656, 657
NcoI CCATGG 1 cut(s) 606
NdeII GATC 5 cut(s) 136, 220, 387, 454, 564
NlaIII CATG 4 cut(s) 12, 96, 119, 610
NlaIV GGNNCC 5 cut(s) 184, 276, 320, 523, 660
NmuCI GTSAC 1 cut(s) 26
OliI CACNNNNGTG 1 cut(s) 168
PceI AGGCCT 1 cut(s) 308
PctI GAATGC 2 cut(s) 396, 488
PfeI GAWTC 1 cut(s) 422
PflMI CCANNNNNTGG 1 cut(s) 531
PkrI GCNGC 2 cut(s) 395, 466
PleI GAGTC 3 cut(s) 95, 287, 567
PmaCI CACGTG 1 cut(s) 170
PmlI CACGTG 1 cut(s) 170
PpsI GAGTC 3 cut(s) 95, 287, 567
Ppu21I YACGTR 1 cut(s) 170
PpuMI RGGWCCY 2 cut(s) 659, 677
Psp5II RGGWCCY 2 cut(s) 659, 677
Psp6I CCWGG 2 cut(s) 467, 673
PspCI CACGTG 1 cut(s) 170
PspGI CCWGG 2 cut(s) 467, 673
PspN4I GGNNCC 5 cut(s) 184, 276, 320, 523, 660
PspPI GGNCC 5 cut(s) 182, 274, 521, 659, 677
PspPPI RGGWCCY 2 cut(s) 659, 677
PvuII CAGCTG 1 cut(s) 393
RseI CAYNNNNRTG 1 cut(s) 168
SaqAI TTAA 1 cut(s) 720
SatI GCNGC 2 cut(s) 394, 465
Sau3AI GATC 5 cut(s) 136, 220, 387, 454, 564
Sau96I GGNCC 5 cut(s) 182, 274, 521, 659, 677
SchI GAGTC 3 cut(s) 95, 287, 568
ScrFI CCNGG 4 cut(s) 469, 656, 657, 675
SduI GDGCHC 1 cut(s) 134
SetI ASST 9 cut(s) 37, 172, 208, 269, 303, 324, 395, 515, 679
SfaNI GCATC 1 cut(s) 361
SinI GGWCC 4 cut(s) 274, 521, 659, 677
SmaI CCCGGG 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 168
SmlI CTYRAG 2 cut(s) 458, 476
SmoI CTYRAG 2 cut(s) 458, 476
Sse9I AATT 8 cut(s) 247, 344, 366, 379, 580, 615, 643, 691
SseBI AGGCCT 1 cut(s) 308
SsiI CCGC 2 cut(s) 46, 362
StuI AGGCCT 1 cut(s) 308
StyD4I CCNGG 4 cut(s) 467, 654, 655, 673
StyI CCWWGG 1 cut(s) 606
TaiI ACGT 1 cut(s) 172
TasI AATT 8 cut(s) 247, 344, 366, 379, 580, 615, 643, 691
TfiI GAWTC 1 cut(s) 422
Tru1I TTAA 1 cut(s) 720
Tru9I TTAA 1 cut(s) 720
TscAI CASTG 3 cut(s) 146, 457, 577
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 2 cut(s) 393, 464
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 2 cut(s) 132, 356
TspMI CCCGGG 1 cut(s) 655
TspRI CASTG 3 cut(s) 146, 457, 577
Van91I CCANNNNNTGG 1 cut(s) 531
VpaK11BI GGWCC 4 cut(s) 274, 521, 659, 677
XagI CCTNNNNNAGG 1 cut(s) 313
XapI RAATTY 3 cut(s) 344, 580, 615
XcmI CCANNNNNNNNNTGG 1 cut(s) 285
XmaI CCCGGG 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.