Rmu_sc0003276.1_g000002

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003276.1
OG0000147
Physical Location & Seq
Reverse (-)
16103 .. 18639
2537 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003276.1_g000002.1.cds

Sequence Viewer

Length: 2049 bp
atggcttcacatgaccatcttgcagcaaggttggagaacacttgtcacattgacgaggttcaagacacggtgtctcttctgggagctcgcattgttgatgtcatgcccaacattggtggcataaaggaggcgatcaggttagcgtggaaggactttggtcctctccagattgttcacctcaaggggaatctcttctccattagggtttcagctgaggcctcaatgaagattacaaagggaggtctctggaatattgaaaaccttcgtttcaatgtcatcagatggcttcctacctggtacatcaatgatgctcctctacatctcatttcattctgggtccaaatttctggcctcatgtatgaaaaaatgaacgctgagaatgctcgactcataggctctgagatcggggatgtgttacaagttgaggatatttgtgatgcatatgccacccttcggggttatctcagagttaaaccaggtgaagaaagaccggagaatgtttggtatggctcttggacgaaaaggaaaatccggcaaactcctcctccgttcgactttgaaatgcccaccaaaaggcaatggcatcgccctggttccaggaaattcatgggtagggcaaatctctctttgagatgccccactgattgtgaccggtctacaacgtcgtctatgttgaagcatcttcccttgcccgacgtgccagaccctgatggtgaccatccaggtataagttcaaatttgaatcagtccgctgacactcctaccatcctgtgccctaccaccctgaccaaggcctcacccttcttctctccccgtgaccacatggagaacccaatggtgacagctttcccaagccctagctggttaaaggtagttgtcactaccactagaacccatgctagctgggctgagaaaaactctaggcccaatcctccaaagagccttaaaaggaaaatccctacaccaaacccaaacaactacaggcccaaaaacttgttaacccagattgatgatgccttgttttctcccaacataagcccatccttgacccaaacaacaaactacactctttgcccaaatctggcccttgccactgctccagccttgcatatcccaaaaacttttcaacgtgtcaaaccaccatcaaaagggaaagaacctctcctctccttgcctggttccgttttcgtctcagtcaacccccaaacccaaactcctttttccccctcctctttgcaaacctcaagtccccacttccatcattccttctcagcacaacaaaaaaacacttgcttgcttaacacaaaaagacccatctcgaaaaccaattttgaattctctcgcagtcatcaaaaagccagacttgtctctactcctggtgatggtagttcaagtcaatctgttctccctcagccggtcctaggtgggggtggcctcgaaagatataggagaactggtcctaggcacaggacaaatgaagcagcgagtggccgatcttgcaatcgaagtgacagagcatctgggtaccatcgtgcttccaggaagagaagggtgggtaagttccctgaccccagtctcaatttgggtgagttcaaggagattactgtcaaaattttagaagattcttctgagtacagtgtggaaacctcaacacatgatggatttttggaagggcaatcccctctccagggcggtggtgactggccgacaggaaactcggtccctccggtcgggactgctggtggccttgccctctggtggcggcaggatgttaaggttgtccctcctcggccttggatttgtattggtgacctaaatgagttgttttcgaatgacgagaaggaaggtggtatccctcttccttggaataggcctcggttcctgcaagatttcatgaactcgaattctctctttgatcttggtttttgtggccccaagtttacctgggagaacaagagagatgatggcctgatcttagagcgtttagacagggctatgggaaattccgactggcttcaagccctgcctgctcaaaaattacccatttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

682

Amino Acids

76.18

Weight (kDa)

9.38

Isoelectric Point (pI)

52.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1524
AccB1I GGYRCC 1 cut(s) 1524
AccI GTMKAC 1 cut(s) 656
AciI CCGC 3 cut(s) 750, 1692, 1762
AcoI YGGCCR 2 cut(s) 1489, 1703
AcsI RAATTY 7 cut(s) 342, 602, 736, 1334, 1611, 1903, 2002
AfaI GTAC 3 cut(s) 299, 1526, 1634
AflIII ACRYGT 1 cut(s) 1129
AgeI ACCGGT 1 cut(s) 651
AhdI GACNNNNNGTC 1 cut(s) 70
AjiI CACGTC 1 cut(s) 697
AjuI GAANNNNNNNTTGG 2 cut(s) 1319, 1351
AluBI AGCT 5 cut(s) 86, 212, 845, 861, 903
AluI AGCT 5 cut(s) 86, 212, 845, 861, 903
Alw21I GWGCWC 1 cut(s) 88
Alw26I GTCTC 5 cut(s) 78, 248, 1195, 1372, 1580
AlwNI CAGNNNCTG 1 cut(s) 707
ApeKI GCWGC 2 cut(s) 23, 1481
ApoI RAATTY 7 cut(s) 342, 602, 736, 1334, 1611, 1903, 2002
ArsI GACNNNNNNTTYG 2 cut(s) 1231, 1263
AsiGI ACCGGT 1 cut(s) 651
Asp700I GAANNNNTTC 2 cut(s) 191, 261
Asp718I GGTACC 1 cut(s) 1524
AspA2I CCTAGG 2 cut(s) 1420, 1460
AspS9I GGNCC 9 cut(s) 158, 337, 924, 984, 1084, 1417, 1457, 1720, 1931
AsuHPI GGTGA 9 cut(s) 167, 491, 725, 789, 850, 1391, 1598, 1709, 1820
AsuII TTCGAA 1 cut(s) 1829
AsuNHI GCTAGC 1 cut(s) 899
AvaII GGWCC 5 cut(s) 158, 337, 1417, 1457, 1720
AvrII CCTAGG 2 cut(s) 1420, 1460
BaeGI GKGCMC 1 cut(s) 776
BaeI ACNNNNGTAYC 2 cut(s) 1516, 1549
BanI GGYRCC 1 cut(s) 1524
BanII GRGCYC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 88
BbvCI CCTCAGC 2 cut(s) 213, 1410
BbvI GCAGC 2 cut(s) 35, 1493
BcgI CGANNNNNNTGC 2 cut(s) 566, 600
BciVI GTATCC 1 cut(s) 1862
BcoDI GTCTC 5 cut(s) 78, 248, 1195, 1372, 1580
BfaI CTAG 6 cut(s) 858, 888, 900, 921, 1421, 1461
BfmI CTRYAG 1 cut(s) 979
BfuI GTATCC 1 cut(s) 1862
BisI GCNGC 3 cut(s) 24, 1482, 1763
BlnI CCTAGG 2 cut(s) 1420, 1460
BlsI GCNGC 3 cut(s) 25, 1483, 1764
Bme18I GGWCC 5 cut(s) 158, 337, 1417, 1457, 1720
BmeRI GACNNNNNGTC 1 cut(s) 70
BmgBI CACGTC 1 cut(s) 697
BmgT120I GGNCC 9 cut(s) 158, 337, 924, 984, 1084, 1417, 1457, 1720, 1931
BmiI GGNNCC 7 cut(s) 338, 595, 1180, 1526, 1722, 1880, 1933
BmrI ACTGGG 1 cut(s) 1566
BmsI GCATC 7 cut(s) 298, 427, 592, 623, 688, 1003, 1526
BmtI GCTAGC 1 cut(s) 903
BmuI ACTGGG 1 cut(s) 1566
BoxI GACNNNNGTC 2 cut(s) 156, 1572
BplI GAGNNNNNCTC 2 cut(s) 902, 934
BpmI CTGGAG 3 cut(s) 149, 1083, 1670
Bpu10I CCTNAGC 2 cut(s) 213, 1410
Bpu14I TTCGAA 1 cut(s) 1829
BpuEI CTTGAG 2 cut(s) 164, 1228
BsaI GGTCTC 1 cut(s) 248
BsaWI WCCGGW 3 cut(s) 490, 651, 1726
BsaXI ACNNNNNCTCC 6 cut(s) 529, 559, 1198, 1228, 1441, 1471
Bse118I RCCGGY 2 cut(s) 651, 1414
Bse1I ACTGG 4 cut(s) 1459, 1572, 1706, 2015
Bse3DI GCAATG 1 cut(s) 584
BseGI GGATG 5 cut(s) 415, 718, 765, 1040, 1774
BseMI GCAATG 1 cut(s) 584
BseMII CTCAG 9 cut(s) 204, 366, 390, 478, 900, 1206, 1284, 1424, 1620
BseNI ACTGG 4 cut(s) 1459, 1572, 1706, 2015
BseRI GAGGAG 6 cut(s) 303, 531, 534, 1154, 1219, 1776
BseSI GKGCMC 1 cut(s) 776
BseXI GCAGC 2 cut(s) 35, 1493
BseYI CCCAGC 1 cut(s) 903
Bsh1285I CGRYCG 1 cut(s) 1731
BshNI GGYRCC 1 cut(s) 1524
BshTI ACCGGT 1 cut(s) 651
BsiEI CGRYCG 1 cut(s) 1731
BsiHKAI GWGCWC 1 cut(s) 88
BsiSI CCGG 5 cut(s) 491, 532, 652, 1415, 1727
BslFI GGGAC 4 cut(s) 1233, 1706, 1747, 1766
BsmAI GTCTC 5 cut(s) 78, 248, 1195, 1372, 1580
BsmBI CGTCTC 1 cut(s) 1195
BsmFI GGGAC 4 cut(s) 1233, 1706, 1747, 1766
BsmI GAATGC 1 cut(s) 385
Bso31I GGTCTC 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 1829
Bsp1286I GDGCHC 2 cut(s) 88, 776
Bsp143I GATC 5 cut(s) 132, 402, 1493, 1915, 1971
BspACI CCGC 3 cut(s) 750, 1692, 1762
BspCNI CTCAG 9 cut(s) 205, 367, 391, 477, 901, 1205, 1283, 1423, 1621
BspHI TCATGA 1 cut(s) 1893
BspLI GGNNCC 7 cut(s) 338, 595, 1180, 1526, 1722, 1880, 1933
BspOI GCTAGC 1 cut(s) 903
BspT104I TTCGAA 1 cut(s) 1829
BspT107I GGYRCC 1 cut(s) 1524
BspTNI GGTCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 584
BsrFI RCCGGY 2 cut(s) 651, 1414
BsrI ACTGG 4 cut(s) 1459, 1572, 1706, 2015
BssAI RCCGGY 2 cut(s) 651, 1414
BssMI GATC 5 cut(s) 132, 402, 1493, 1915, 1971
BssT1I CCWWGG 5 cut(s) 789, 1420, 1460, 1793, 1862
Bst4CI ACNGT 3 cut(s) 70, 1606, 1637
Bst6I CTCTTC 4 cut(s) 81, 197, 1538, 1863
BstBI TTCGAA 1 cut(s) 1829
BstC8I GCNNGC 4 cut(s) 88, 901, 1295, 2028
BstEII GGTNACC 2 cut(s) 713, 1808
BstENI CCTNNNNNAGG 1 cut(s) 788
BstF5I GGATG 5 cut(s) 415, 718, 765, 1040, 1774
BstKTI GATC 5 cut(s) 135, 405, 1496, 1918, 1974
BstMAI GTCTC 5 cut(s) 78, 248, 1195, 1372, 1580
BstMBI GATC 5 cut(s) 132, 402, 1493, 1915, 1971
BstMCI CGRYCG 1 cut(s) 1731
BstMWI GCNNNNNNNGC 5 cut(s) 380, 697, 905, 1497, 2027
BstPAI GACNNNNGTC 2 cut(s) 156, 1572
BstPI GGTNACC 2 cut(s) 713, 1808
BstSFI CTRYAG 1 cut(s) 979
BstSLI GKGCMC 1 cut(s) 776
BstV1I GCAGC 2 cut(s) 35, 1493
BstXI CCANNNNNNTGG 2 cut(s) 347, 1694
BsuI GTATCC 1 cut(s) 1862
BtgZI GCGATG 1 cut(s) 569
BtrI CACGTC 1 cut(s) 697
BtsCI GGATG 5 cut(s) 415, 718, 765, 1040, 1774
BtsI GCAGTG 1 cut(s) 1092
BtsIMutI CAGTG 3 cut(s) 639, 1092, 1642
Cac8I GCNNGC 4 cut(s) 88, 901, 1295, 2028
CaiI CAGNNNCTG 1 cut(s) 707
CciI TCATGA 1 cut(s) 1893
Cfr10I RCCGGY 2 cut(s) 651, 1414
Cfr13I GGNCC 9 cut(s) 158, 337, 924, 984, 1084, 1417, 1457, 1720, 1931
CsiI ACCWGGT 2 cut(s) 293, 475
Csp6I GTAC 3 cut(s) 298, 1525, 1633
CspAI ACCGGT 1 cut(s) 651
CspCI CAANNNNNGTGG 2 cut(s) 97, 132
CviAII CATG 8 cut(s) 11, 103, 355, 607, 823, 896, 1655, 1894
CviQI GTAC 3 cut(s) 298, 1525, 1633
DpnI GATC 5 cut(s) 134, 404, 1495, 1917, 1973
DpnII GATC 5 cut(s) 132, 402, 1493, 1915, 1971
DriI GACNNNNNGTC 1 cut(s) 70
EaeI YGGCCR 2 cut(s) 1489, 1703
Eam1104I CTCTTC 4 cut(s) 81, 197, 1538, 1863
Eam1105I GACNNNNNGTC 1 cut(s) 70
EarI CTCTTC 4 cut(s) 81, 197, 1538, 1863
Ecl136II GAGCTC 1 cut(s) 86
Eco130I CCWWGG 5 cut(s) 789, 1420, 1460, 1793, 1862
Eco147I AGGCCT 3 cut(s) 218, 794, 1873
Eco24I GRGCYC 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 248
Eco47I GGWCC 5 cut(s) 158, 337, 1417, 1457, 1720
Eco53kI GAGCTC 1 cut(s) 86
Eco91I GGTNACC 2 cut(s) 713, 1808
EcoICRI GAGCTC 1 cut(s) 86
EcoNI CCTNNNNNAGG 1 cut(s) 788
EcoO65I GGTNACC 2 cut(s) 713, 1808
EcoRI GAATTC 2 cut(s) 1334, 1903
EcoT14I CCWWGG 5 cut(s) 789, 1420, 1460, 1793, 1862
EcoT22I ATGCAT 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 5 cut(s) 789, 1420, 1460, 1793, 1862
Esp3I CGTCTC 1 cut(s) 1195
FaeI CATG 8 cut(s) 14, 106, 358, 610, 826, 899, 1658, 1897
FalI AAGNNNNNCTT 2 cut(s) 1347, 1379
FaqI GGGAC 4 cut(s) 1233, 1706, 1747, 1766
FatI CATG 8 cut(s) 10, 102, 354, 606, 822, 895, 1654, 1893
FauNDI CATATG 1 cut(s) 442
FblI GTMKAC 1 cut(s) 656
Fnu4HI GCNGC 3 cut(s) 24, 1482, 1763
FokI GGATG 5 cut(s) 422, 705, 752, 1027, 1781
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 3 cut(s) 24, 1482, 1763
FspBI CTAG 6 cut(s) 858, 888, 900, 921, 1421, 1461
GluI GCNGC 3 cut(s) 24, 1482, 1763
GsaI CCCAGC 1 cut(s) 907
GsuI CTGGAG 3 cut(s) 149, 1083, 1670
HapII CCGG 5 cut(s) 491, 532, 652, 1415, 1727
Hin1II CATG 8 cut(s) 14, 106, 358, 610, 826, 899, 1658, 1897
HincII GTYRAC 2 cut(s) 999, 1198
HindII GTYRAC 2 cut(s) 999, 1198
HinfI GANTC 4 cut(s) 187, 387, 742, 1622
HpaI GTTAAC 1 cut(s) 999
HpaII CCGG 5 cut(s) 491, 532, 652, 1415, 1727
HphI GGTGA 9 cut(s) 167, 491, 725, 789, 850, 1391, 1598, 1709, 1820
Hpy166II GTNNAC 5 cut(s) 175, 657, 999, 1198, 1941
Hpy188I TCNGA 5 cut(s) 281, 400, 467, 1630, 2008
Hpy188III TCNNGA 6 cut(s) 62, 166, 247, 1318, 1732, 1894
Hpy8I GTNNAC 5 cut(s) 175, 657, 999, 1198, 1941
Hpy99I CGWCG 2 cut(s) 667, 698
HpyAV CCTTC 9 cut(s) 142, 272, 461, 811, 1276, 1542, 1664, 1834, 1838
HpyCH4III ACNGT 3 cut(s) 70, 1606, 1637
HpyCH4IV ACGT 3 cut(s) 662, 696, 1129
HpyCH4V TGCA 6 cut(s) 23, 440, 1108, 1237, 1500, 1885
HpyF10VI GCNNNNNNNGC 5 cut(s) 380, 697, 905, 1497, 2027
HpySE526I ACGT 3 cut(s) 662, 696, 1129
Hsp92II CATG 8 cut(s) 14, 106, 358, 610, 826, 899, 1658, 1897
KpnI GGTACC 1 cut(s) 1528
KspAI GTTAAC 1 cut(s) 999
Kzo9I GATC 5 cut(s) 132, 402, 1493, 1915, 1971
LmnI GCTCC 3 cut(s) 83, 316, 1102
Lsp1109I GCAGC 2 cut(s) 35, 1493
LweI GCATC 7 cut(s) 298, 427, 592, 623, 688, 1003, 1526
MabI ACCWGGT 2 cut(s) 293, 475
MaeI CTAG 6 cut(s) 858, 888, 900, 921, 1421, 1461
MaeII ACGT 3 cut(s) 662, 696, 1129
MalI GATC 5 cut(s) 134, 404, 1495, 1917, 1973
MboI GATC 5 cut(s) 132, 402, 1493, 1915, 1971
MhlI GDGCHC 2 cut(s) 88, 776
MlyI GAGTC 1 cut(s) 381
MmeI TCCRAC 2 cut(s) 12, 2031
Mph1103I ATGCAT 1 cut(s) 442
MroXI GAANNNNTTC 2 cut(s) 191, 261
MseI TTAA 6 cut(s) 471, 866, 945, 998, 1299, 1773
MspA1I CMGCKG 2 cut(s) 212, 752
MspI CCGG 5 cut(s) 491, 532, 652, 1415, 1727
Mva1269I GAATGC 1 cut(s) 385
MwoI GCNNNNNNNGC 5 cut(s) 380, 697, 905, 1497, 2027
NdeI CATATG 1 cut(s) 442
NdeII GATC 5 cut(s) 132, 402, 1493, 1915, 1971
NheI GCTAGC 1 cut(s) 899
NlaIII CATG 8 cut(s) 14, 106, 358, 610, 826, 899, 1658, 1897
NlaIV GGNNCC 7 cut(s) 338, 595, 1180, 1526, 1722, 1880, 1933
NmeAIII GCCGAG 1 cut(s) 1768
NmuCI GTSAC 9 cut(s) 44, 647, 713, 815, 838, 877, 1508, 1697, 1808
NsiI ATGCAT 1 cut(s) 442
NspV TTCGAA 1 cut(s) 1829
PagI TCATGA 1 cut(s) 1893
PceI AGGCCT 3 cut(s) 218, 794, 1873
PctI GAATGC 1 cut(s) 385
PdmI GAANNNNTTC 2 cut(s) 191, 261
PfeI GAWTC 3 cut(s) 187, 742, 1622
PfoI TCCNGGA 2 cut(s) 596, 1538
PinAI ACCGGT 1 cut(s) 651
PkrI GCNGC 3 cut(s) 25, 1483, 1764
PleI GAGTC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 381
PshAI GACNNNNGTC 2 cut(s) 156, 1572
Psp124BI GAGCTC 1 cut(s) 88
PspEI GGTNACC 2 cut(s) 713, 1808
PspFI CCCAGC 1 cut(s) 903
PspN4I GGNNCC 7 cut(s) 338, 595, 1180, 1526, 1722, 1880, 1933
PspPI GGNCC 9 cut(s) 158, 337, 924, 984, 1084, 1417, 1457, 1720, 1931
PstNI CAGNNNCTG 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 3 cut(s) 299, 1526, 1634
RsaNI GTAC 3 cut(s) 298, 1525, 1633
SacI GAGCTC 1 cut(s) 88
SaqAI TTAA 6 cut(s) 471, 866, 945, 998, 1299, 1773
SatI GCNGC 3 cut(s) 24, 1482, 1763
Sau3AI GATC 5 cut(s) 132, 402, 1493, 1915, 1971
Sau96I GGNCC 9 cut(s) 158, 337, 924, 984, 1084, 1417, 1457, 1720, 1931
SchI GAGTC 1 cut(s) 381
SduI GDGCHC 2 cut(s) 88, 776
SexAI ACCWGGT 2 cut(s) 293, 475
SfaNI GCATC 7 cut(s) 298, 427, 592, 623, 688, 1003, 1526
SfcI CTRYAG 1 cut(s) 979
SfuI TTCGAA 1 cut(s) 1829
SinI GGWCC 5 cut(s) 158, 337, 1417, 1457, 1720
SmlI CTYRAG 2 cut(s) 179, 1243
SmoI CTYRAG 2 cut(s) 179, 1243
SseBI AGGCCT 3 cut(s) 218, 794, 1873
SsiI CCGC 3 cut(s) 750, 1692, 1762
SspI AATATT 1 cut(s) 253
SspMI CTAG 6 cut(s) 858, 888, 900, 921, 1421, 1461
SstI GAGCTC 1 cut(s) 88
StuI AGGCCT 3 cut(s) 218, 794, 1873
StyI CCWWGG 5 cut(s) 789, 1420, 1460, 1793, 1862
TaaI ACNGT 3 cut(s) 70, 1606, 1637
TaiI ACGT 3 cut(s) 665, 699, 1132
TaqI TCGA 7 cut(s) 385, 552, 1319, 1437, 1504, 1829, 1901
TaqII GACCGA 1 cut(s) 1708
TatI WGTACW 1 cut(s) 1632
TauI GCSGC 1 cut(s) 1765
TfiI GAWTC 3 cut(s) 187, 742, 1622
Tru1I TTAA 6 cut(s) 471, 866, 945, 998, 1299, 1773
Tru9I TTAA 6 cut(s) 471, 866, 945, 998, 1299, 1773
TscAI CASTG 3 cut(s) 646, 1099, 1642
TseFI GTSAC 9 cut(s) 44, 647, 713, 815, 838, 877, 1508, 1697, 1808
TseI GCWGC 2 cut(s) 23, 1481
Tsp45I GTSAC 9 cut(s) 44, 647, 713, 815, 838, 877, 1508, 1697, 1808
TspDTI ATGAA 8 cut(s) 239, 318, 375, 383, 595, 1491, 1882, 1910
TspGWI ACGGA 2 cut(s) 537, 1171
TspRI CASTG 3 cut(s) 646, 1099, 1642
VpaK11BI GGWCC 5 cut(s) 158, 337, 1417, 1457, 1720
XagI CCTNNNNNAGG 1 cut(s) 788
XapI RAATTY 7 cut(s) 342, 602, 736, 1334, 1611, 1903, 2002
XcmI CCANNNNNNNNNTGG 3 cut(s) 604, 858, 1579
XmaJI CCTAGG 2 cut(s) 1420, 1460
XmiI GTMKAC 1 cut(s) 656
XmnI GAANNNNTTC 2 cut(s) 191, 261
XspI CTAG 6 cut(s) 858, 888, 900, 921, 1421, 1461
Zsp2I ATGCAT 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.