RchiOBHm_Chr2g0163241

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000147
Physical Location & Seq
Forward (+)
78824904 .. 78827871
2968 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53143

Sequence Viewer

Length: 417 bp
ATGGTGTTTGATGTCTTATGTTTAGTAGATACTATGATAGATGAGGATACAGCTAAGAACTTGGTTACTAAGTTGCCTTTTTGTAACTATTTTTGTGTTCCTCCGGTTGGGCATTCCGGTGGCCTGTTACTTTTATGGAACTCTAATTATAGTATTTCCATTTTAAGCTCTCATCCTAAGTTTATTCATTGCAAGTTTCAGGATGTGTGTTCGACTACTCCCTGGCTGGTCACTTTTCTTTACATGTTTCCGCATAAACACCAGCAGCAGGATCTTTGGAATGAACTTGTTAATCTGCAAGTCCATTCTCAAGAACCTTGGTTTATTATGGGTGATTTTAATTGCATTTTACATCTAAAAGAGAAACGTGGCGGCTCAAATTTTGTTGACCGTTATATCATTCAGTTTAGACCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-RVT

Protein Analysis

138

Amino Acids

16.14

Weight (kDa)

6.35

Isoelectric Point (pI)

43.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 121 3.3e-09 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 251, 372
AclWI GGATC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 379
AfiI CCNNNNNNNGG 2 cut(s) 107, 268
AflIII ACRYGT 1 cut(s) 243
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 2 cut(s) 53, 168
AluI AGCT 2 cut(s) 53, 168
AlwI GGATC 1 cut(s) 279
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 265
ApoI RAATTY 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 344
BbvI GCAGC 1 cut(s) 277
BciT130I CCWGG 1 cut(s) 223
BciVI GTATCC 1 cut(s) 40
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 2 cut(s) 266, 373
BlsI GCNGC 2 cut(s) 267, 374
Bme1390I CCNGG 1 cut(s) 223
BmrFI CCNGG 1 cut(s) 223
BpuEI CTTGAG 1 cut(s) 294
BsaJI CCNNGG 2 cut(s) 221, 317
BsaWI WCCGGW 2 cut(s) 103, 116
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 268
Bse3DI GCAATG 1 cut(s) 187
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 2 cut(s) 221, 317
BseGI GGATG 2 cut(s) 172, 208
BseLI CCNNNNNNNGG 2 cut(s) 107, 268
BseMI GCAATG 1 cut(s) 187
BseXI GCAGC 1 cut(s) 277
BshFI GGCC 1 cut(s) 123
BsiSI CCGG 2 cut(s) 104, 117
BslI CCNNNNNNNGG 2 cut(s) 107, 268
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 1 cut(s) 123
Bsp143I GATC 1 cut(s) 271
BspACI CCGC 2 cut(s) 251, 372
BspANI GGCC 1 cut(s) 123
BspPI GGATC 1 cut(s) 279
BsrDI GCAATG 1 cut(s) 187
BssECI CCNNGG 2 cut(s) 221, 317
BssMI GATC 1 cut(s) 271
BssT1I CCWWGG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 223
Bst4CI ACNGT 1 cut(s) 392
BstDEI CTNAG 4 cut(s) 54, 69, 177, 414
BstF5I GGATG 2 cut(s) 172, 208
BstKTI GATC 1 cut(s) 274
BstMBI GATC 1 cut(s) 271
BstNI CCWGG 1 cut(s) 223
BstNSI RCATGY 1 cut(s) 247
BstSCI CCNGG 1 cut(s) 221
BstV1I GCAGC 1 cut(s) 277
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 2 cut(s) 172, 208
CviAII CATG 1 cut(s) 244
CviJI RGCY 5 cut(s) 53, 123, 168, 226, 375
CviKI_1 RGCY 5 cut(s) 53, 123, 168, 226, 375
DdeI CTNAG 4 cut(s) 54, 69, 177, 414
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 317
EcoRII CCWGG 1 cut(s) 221
EcoT14I CCWWGG 1 cut(s) 317
ErhI CCWWGG 1 cut(s) 317
FaeI CATG 1 cut(s) 247
FaiI YATR 8 cut(s) 19, 35, 136, 150, 245, 255, 329, 396
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 2 cut(s) 266, 373
FokI GGATG 2 cut(s) 159, 215
Fsp4HI GCNGC 2 cut(s) 266, 373
GluI GCNGC 2 cut(s) 266, 373
HaeIII GGCC 1 cut(s) 123
HapII CCGG 2 cut(s) 104, 117
Hin1II CATG 1 cut(s) 247
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HpaII CCGG 2 cut(s) 104, 117
HphI GGTGA 1 cut(s) 344
Hpy166II GTNNAC 1 cut(s) 388
Hpy188III TCNNGA 2 cut(s) 200, 311
Hpy8I GTNNAC 1 cut(s) 388
HpyCH4III ACNGT 1 cut(s) 392
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 3 cut(s) 192, 298, 345
HpyF3I CTNAG 4 cut(s) 54, 69, 177, 414
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 1 cut(s) 247
Kzo9I GATC 1 cut(s) 271
LpnPI CCDG 9 cut(s) 117, 130, 137, 185, 208, 212, 235, 254, 275
Lsp1109I GCAGC 1 cut(s) 277
MaeII ACGT 1 cut(s) 367
MaeIII GTNAC 4 cut(s) 64, 83, 126, 229
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MflI RGATCY 1 cut(s) 271
MluCI AATT 3 cut(s) 145, 340, 379
MnlI CCTC 2 cut(s) 37, 111
MseI TTAA 3 cut(s) 164, 291, 339
MslI CAYNNNNRTG 1 cut(s) 117
MspI CCGG 2 cut(s) 104, 117
MspR9I CCNGG 1 cut(s) 223
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 1 cut(s) 223
NdeII GATC 1 cut(s) 271
NlaIII CATG 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 229
NspI RCATGY 1 cut(s) 247
PciI ACATGT 1 cut(s) 243
PctI GAATGC 1 cut(s) 112
PkrI GCNGC 2 cut(s) 267, 374
PscI ACATGT 1 cut(s) 243
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PsuI RGATCY 1 cut(s) 271
RseI CAYNNNNRTG 1 cut(s) 117
SaqAI TTAA 3 cut(s) 164, 291, 339
SatI GCNGC 2 cut(s) 266, 373
Sau3AI GATC 1 cut(s) 271
ScrFI CCNGG 1 cut(s) 223
SetI ASST 5 cut(s) 55, 170, 319, 370, 415
SmiMI CAYNNNNRTG 1 cut(s) 117
SmlI CTYRAG 1 cut(s) 309
SmoI CTYRAG 1 cut(s) 309
Sse9I AATT 3 cut(s) 145, 340, 379
SsiI CCGC 2 cut(s) 251, 372
StyD4I CCNGG 1 cut(s) 221
StyI CCWWGG 1 cut(s) 317
TaaI ACNGT 1 cut(s) 392
TaiI ACGT 1 cut(s) 370
TaqI TCGA 1 cut(s) 212
TasI AATT 3 cut(s) 145, 340, 379
TauI GCSGC 1 cut(s) 375
Tru1I TTAA 3 cut(s) 164, 291, 339
Tru9I TTAA 3 cut(s) 164, 291, 339
TseFI GTSAC 1 cut(s) 229
TseI GCWGC 1 cut(s) 265
Tsp45I GTSAC 1 cut(s) 229
TspDTI ATGAA 2 cut(s) 176, 297
XapI RAATTY 1 cut(s) 379
XceI RCATGY 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.