Rh4CG114900

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000147
Physical Location & Seq
Reverse (-)
21797455 .. 21797721
267 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG114900.1

Sequence Viewer

Length: 267 bp
ATGGAGCTGGAAAGAGTTTGGACTCTTGAAGAAAGCTTCTGGCATCAACGCACAAGAGTAAACTGGCTGCGAAAGGAACTCCAGGTTCTTCCACATGACTGCTTTACACAAAGACAAGTTAACAGAATTTCCACTCTTCACTTAAGTAATGACTCTTGGATCTCTGATGAGGCCAGTATTCAAGCTGCTTTTAAGGACTACTTCAACACTCTATTTCAAGCTTCTTCTCCACGGGATTTGAGCAGTGCTTTAAACTGTGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

88

Amino Acids

10.44

Weight (kDa)

5.84

Isoelectric Point (pI)

33.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 167
AcsI RAATTY 1 cut(s) 126
AflII CTTAAG 1 cut(s) 142
AgsI TTSAA 4 cut(s) 29, 182, 205, 218
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 4 cut(s) 7, 36, 185, 221
AluI AGCT 4 cut(s) 7, 36, 185, 221
AlwI GGATC 1 cut(s) 167
AoxI GGCC 1 cut(s) 171
ApeKI GCWGC 2 cut(s) 67, 185
ApoI RAATTY 1 cut(s) 126
BbvI GCAGC 2 cut(s) 54, 172
BciT130I CCWGG 1 cut(s) 83
BfrI CTTAAG 1 cut(s) 142
BisI GCNGC 2 cut(s) 68, 186
BlsI GCNGC 2 cut(s) 69, 187
Bme1390I CCNGG 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 52
BpmI CTGGAG 1 cut(s) 65
BsaJI CCNNGG 1 cut(s) 230
Bse1I ACTGG 2 cut(s) 68, 174
BseBI CCWGG 1 cut(s) 83
BseDI CCNNGG 1 cut(s) 230
BseNI ACTGG 2 cut(s) 68, 174
BseXI GCAGC 2 cut(s) 54, 172
BshFI GGCC 1 cut(s) 173
BsnI GGCC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 159
BspANI GGCC 1 cut(s) 173
BspPI GGATC 1 cut(s) 167
BspTI CTTAAG 1 cut(s) 142
BsrI ACTGG 2 cut(s) 68, 174
BssECI CCNNGG 1 cut(s) 230
BssMI GATC 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 141
BstAFI CTTAAG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 230
BstKTI GATC 1 cut(s) 162
BstMBI GATC 1 cut(s) 159
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstV1I GCAGC 2 cut(s) 54, 172
BstX2I RGATCY 1 cut(s) 159
BstYI RGATCY 1 cut(s) 159
BsuRI GGCC 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 230
BtsI GCAGTG 1 cut(s) 250
BtsIMutI CAGTG 1 cut(s) 250
CspCI CAANNNNNGTGG 2 cut(s) 219, 254
CviAII CATG 1 cut(s) 95
CviJI RGCY 6 cut(s) 7, 36, 67, 173, 185, 221
CviKI_1 RGCY 6 cut(s) 7, 36, 67, 173, 185, 221
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
DraI TTTAAA 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 141
EarI CTCTTC 1 cut(s) 141
EcoRII CCWGG 1 cut(s) 81
FaeI CATG 1 cut(s) 98
FaiI YATR 1 cut(s) 96
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 1 cut(s) 94
Fnu4HI GCNGC 2 cut(s) 68, 186
Fsp4HI GCNGC 2 cut(s) 68, 186
GluI GCNGC 2 cut(s) 68, 186
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 1 cut(s) 173
Hin1II CATG 1 cut(s) 98
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HindIII AAGCTT 2 cut(s) 34, 219
HinfI GANTC 2 cut(s) 22, 152
HpaI GTTAAC 1 cut(s) 121
Hpy166II GTNNAC 2 cut(s) 61, 121
Hpy188I TCNGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 61, 121
HpyCH4III ACNGT 1 cut(s) 257
Hsp92II CATG 1 cut(s) 98
KspAI GTTAAC 1 cut(s) 121
Kzo9I GATC 1 cut(s) 159
LmnI GCTCC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 25, 49, 68, 95, 187
Lsp1109I GCAGC 2 cut(s) 54, 172
LweI GCATC 1 cut(s) 52
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 4 cut(s) 41, 80, 128, 216
MflI RGATCY 1 cut(s) 159
MluCI AATT 1 cut(s) 126
MlyI GAGTC 2 cut(s) 16, 146
MnlI CCTC 1 cut(s) 163
MseI TTAA 5 cut(s) 120, 143, 192, 251, 265
MspCI CTTAAG 1 cut(s) 142
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
NdeII GATC 1 cut(s) 159
NlaIII CATG 1 cut(s) 98
PkrI GCNGC 2 cut(s) 69, 187
PleI GAGTC 2 cut(s) 16, 146
PpsI GAGTC 2 cut(s) 16, 146
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PsuI RGATCY 1 cut(s) 159
SaqAI TTAA 5 cut(s) 120, 143, 192, 251, 265
SatI GCNGC 2 cut(s) 68, 186
Sau3AI GATC 1 cut(s) 159
SchI GAGTC 2 cut(s) 16, 146
ScrFI CCNGG 1 cut(s) 83
SetI ASST 5 cut(s) 9, 38, 87, 187, 223
SfaNI GCATC 1 cut(s) 52
SmlI CTYRAG 1 cut(s) 142
SmoI CTYRAG 1 cut(s) 142
Sse9I AATT 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 257
TasI AATT 1 cut(s) 126
Tru1I TTAA 5 cut(s) 120, 143, 192, 251, 265
Tru9I TTAA 5 cut(s) 120, 143, 192, 251, 265
TscAI CASTG 1 cut(s) 250
TseI GCWGC 2 cut(s) 67, 185
TspRI CASTG 1 cut(s) 250
Vha464I CTTAAG 1 cut(s) 142
XapI RAATTY 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.