Rmu_co8126340.1_g000001

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8126340.1
OG0000147
Physical Location & Seq
Reverse (-)
2 .. 472
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8126340.1_g000001.1.cds

Sequence Viewer

Length: 471 bp
atggaggccaatgatttgcttgatattcaattcaaagggcagaagtttacgtggagtaataattggccgggtggaggtctcattaaaatccgattggatcgaggcatcgtcaatacgaaatggctagaaagatggccggagacaagtgtttttcattttccaaagctgggttctgaccactgcccattgatctttgacgctgatccacctttggatcgaggcccaaaaacttttaagtttgagccttcttgggttgacgacagagaatgcaaagaggtgatatcaagggcttgggacgttccttgcgacggtaccagtgcctctcaatgggttggtaagattgatcgttgcgccaaggacttatctacttggagtaagttgaaattttcaaattatagaaagactataaacaatcacattgaagaacttcaactgcttcaggattcctcttttgaggatgatagaaagaga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

157

Amino Acids

18.33

Weight (kDa)

6.3

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 311
AclWI GGATC 3 cut(s) 105, 197, 222
AcoI YGGCCR 2 cut(s) 65, 134
AcsI RAATTY 1 cut(s) 383
AcuI CTGAAG 1 cut(s) 422
AfaI GTAC 1 cut(s) 313
AfiI CCNNNNNNNGG 4 cut(s) 74, 167, 308, 327
AgsI TTSAA 6 cut(s) 29, 34, 382, 390, 422, 431
AjuI GAANNNNNNNTTGG 2 cut(s) 154, 186
AluBI AGCT 1 cut(s) 166
AluI AGCT 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 83, 134
AlwI GGATC 3 cut(s) 105, 197, 222
AoxI GGCC 4 cut(s) 6, 65, 134, 220
ApoI RAATTY 1 cut(s) 383
Asp700I GAANNNNTTC 1 cut(s) 426
Asp718I GGTACC 1 cut(s) 311
AspLEI GCGC 1 cut(s) 353
AspS9I GGNCC 1 cut(s) 221
AsuC2I CCSGG 1 cut(s) 69
AsuHPI GGTGA 1 cut(s) 289
BanI GGYRCC 1 cut(s) 311
BccI CCATC 1 cut(s) 126
BcnI CCSGG 1 cut(s) 69
BcoDI GTCTC 2 cut(s) 83, 134
BfaI CTAG 1 cut(s) 125
Bme1390I CCNGG 1 cut(s) 69
BmgT120I GGNCC 1 cut(s) 221
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 69
BmsI GCATC 1 cut(s) 114
BpuMI CCSGG 1 cut(s) 69
BsaAI YACGTR 1 cut(s) 51
BsaI GGTCTC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 354
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 167, 308, 327
Bse1I ACTGG 1 cut(s) 315
BseDI CCNNGG 1 cut(s) 354
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 4 cut(s) 74, 167, 308, 327
BseNI ACTGG 1 cut(s) 315
BseYI CCCAGC 1 cut(s) 166
BshFI GGCC 4 cut(s) 8, 67, 136, 222
BshNI GGYRCC 1 cut(s) 311
BsiSI CCGG 2 cut(s) 68, 137
BslFI GGGAC 1 cut(s) 308
BslI CCNNNNNNNGG 4 cut(s) 74, 167, 308, 327
BsmAI GTCTC 2 cut(s) 83, 134
BsmFI GGGAC 1 cut(s) 308
BsmI GAATGC 1 cut(s) 272
BsnI GGCC 4 cut(s) 8, 67, 136, 222
Bso31I GGTCTC 1 cut(s) 83
Bsp143I GATC 5 cut(s) 97, 189, 202, 214, 343
BspANI GGCC 4 cut(s) 8, 67, 136, 222
BspLI GGNNCC 1 cut(s) 313
BspPI GGATC 3 cut(s) 105, 197, 222
BspT107I GGYRCC 1 cut(s) 311
BspTNI GGTCTC 1 cut(s) 83
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 354
BssMI GATC 5 cut(s) 97, 189, 202, 214, 343
BssT1I CCWWGG 1 cut(s) 354
Bst4CI ACNGT 1 cut(s) 311
BstBAI YACGTR 1 cut(s) 51
BstF5I GGATG 1 cut(s) 463
BstHHI GCGC 1 cut(s) 353
BstKTI GATC 5 cut(s) 100, 192, 205, 217, 346
BstMAI GTCTC 2 cut(s) 83, 134
BstMBI GATC 5 cut(s) 97, 189, 202, 214, 343
BstSCI CCNGG 1 cut(s) 67
BsuRI GGCC 4 cut(s) 8, 67, 136, 222
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 1 cut(s) 178
BtsIMutI CAGTG 2 cut(s) 178, 322
CfoI GCGC 1 cut(s) 353
Cfr13I GGNCC 1 cut(s) 221
CseI GACGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 312
CviJI RGCY 8 cut(s) 8, 67, 124, 136, 166, 222, 244, 290
CviKI_1 RGCY 8 cut(s) 8, 67, 124, 136, 166, 222, 244, 290
CviQI GTAC 1 cut(s) 312
DpnI GATC 5 cut(s) 99, 191, 204, 216, 345
DpnII GATC 5 cut(s) 97, 189, 202, 214, 343
EaeI YGGCCR 2 cut(s) 65, 134
Eco130I CCWWGG 1 cut(s) 354
Eco31I GGTCTC 1 cut(s) 83
Eco32I GATATC 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 422
EcoRV GATATC 1 cut(s) 282
EcoT14I CCWWGG 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 354
FaiI YATR 2 cut(s) 396, 407
FaqI GGGAC 1 cut(s) 308
FspBI CTAG 1 cut(s) 125
GlaI GCGC 1 cut(s) 352
GsaI CCCAGC 1 cut(s) 170
HaeIII GGCC 4 cut(s) 8, 67, 136, 222
HapII CCGG 2 cut(s) 68, 137
HgaI GACGC 1 cut(s) 206
HhaI GCGC 1 cut(s) 353
Hin6I GCGC 1 cut(s) 351
HinP1I GCGC 1 cut(s) 351
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HinfI GANTC 1 cut(s) 443
HpaII CCGG 2 cut(s) 68, 137
HphI GGTGA 1 cut(s) 289
Hpy166II GTNNAC 2 cut(s) 48, 256
Hpy188I TCNGA 2 cut(s) 92, 175
Hpy188III TCNNGA 1 cut(s) 440
Hpy8I GTNNAC 2 cut(s) 48, 256
Hpy99I CGWCG 1 cut(s) 311
HpyAV CCTTC 1 cut(s) 255
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 2 cut(s) 50, 297
HpyCH4V TGCA 1 cut(s) 270
HpySE526I ACGT 2 cut(s) 50, 297
HspAI GCGC 1 cut(s) 351
KpnI GGTACC 1 cut(s) 315
Kzo9I GATC 5 cut(s) 97, 189, 202, 214, 343
LpnPI CCDG 5 cut(s) 81, 150, 152, 328, 425
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 125
MaeII ACGT 2 cut(s) 50, 297
MalI GATC 5 cut(s) 99, 191, 204, 216, 345
MboI GATC 5 cut(s) 97, 189, 202, 214, 343
MboII GAAGA 1 cut(s) 434
MluCI AATT 4 cut(s) 29, 61, 383, 391
MnlI CCTC 7 cut(s) 68, 95, 212, 268, 331, 448, 457
MroXI GAANNNNTTC 1 cut(s) 426
MseI TTAA 2 cut(s) 84, 234
MspI CCGG 2 cut(s) 68, 137
MspR9I CCNGG 1 cut(s) 69
Mva1269I GAATGC 1 cut(s) 272
NciI CCSGG 1 cut(s) 69
NdeII GATC 5 cut(s) 97, 189, 202, 214, 343
NlaIV GGNNCC 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 426
PfeI GAWTC 1 cut(s) 443
Ppu21I YACGTR 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 166
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 1 cut(s) 221
RsaI GTAC 1 cut(s) 313
RsaNI GTAC 1 cut(s) 312
SaqAI TTAA 2 cut(s) 84, 234
Sau3AI GATC 5 cut(s) 97, 189, 202, 214, 343
Sau96I GGNCC 1 cut(s) 221
ScrFI CCNGG 1 cut(s) 69
SetI ASST 6 cut(s) 53, 79, 168, 211, 279, 300
SfaNI GCATC 1 cut(s) 114
Sse9I AATT 4 cut(s) 29, 61, 383, 391
SspMI CTAG 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 67
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 2 cut(s) 53, 300
TaqI TCGA 2 cut(s) 100, 217
TasI AATT 4 cut(s) 29, 61, 383, 391
TfiI GAWTC 1 cut(s) 443
Tru1I TTAA 2 cut(s) 84, 234
Tru9I TTAA 2 cut(s) 84, 234
TscAI CASTG 2 cut(s) 185, 322
TspDTI ATGAA 1 cut(s) 143
TspRI CASTG 2 cut(s) 185, 322
XapI RAATTY 1 cut(s) 383
XmnI GAANNNNTTC 1 cut(s) 426
XspI CTAG 1 cut(s) 125
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.