Rh6BG256100

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000147
Physical Location & Seq
Reverse (-)
46957073 .. 46957567
495 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG256100.1

Sequence Viewer

Length: 495 bp
ATGTCCTATGAGAAATGGGGAGGTCTTCCTCATTCTCGGTGCCTCATGGATCTCTTTAATCATTTCATTACTCAAGCCGGCTTGAGGGATTTGCAATTCCAGGGTCCTTGTTTCACTTGGTATAGTTATCGTTTTGGGGACCTCTATCTTAAGGAATGGTTGGATAGAGGTCTTGCAAATTCTTCATGGTGTTTGGCTAAACCAAGGACTCAAGTTTTCCATCTTCCCTTGCTTGGGTCGGATCATCGTTCTTTACTGTTGGATGCTTCTCCAGTTGAATCTAAGGCCCCTAAACTTTTTCGGTTTGAGCACATTTGGACGACTAGTGATATGTGTGGCCAAATCATTGCAGAAAATTGGGTGGCAGCTTCTGGCTCTGCTGCTATGCCAGTTTGGCTCACAAATCTCCGAGCTTGTAAGCTCTCTTTACTGGCTTGGTGTAAGTCTGCTTTCCCCAACTCTTACTCTTTGGTCCAAAGTTGCCTGTTCACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

164

Amino Acids

18.73

Weight (kDa)

8.5

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 39
AclWI GGATC 2 cut(s) 57, 249
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 178
AfiI CCNNNNNNNGG 3 cut(s) 84, 233, 234
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 278
AhlI ACTAGT 1 cut(s) 323
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 3 cut(s) 368, 413, 421
AluI AGCT 3 cut(s) 368, 413, 421
Alw21I GWGCWC 1 cut(s) 312
AlwI GGATC 2 cut(s) 57, 249
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 2 cut(s) 285, 337
ApeKI GCWGC 2 cut(s) 365, 380
ApoI RAATTY 1 cut(s) 178
AspS9I GGNCC 4 cut(s) 104, 139, 286, 472
AsuHPI GGTGA 1 cut(s) 481
AvaII GGWCC 3 cut(s) 104, 139, 472
BalI TGGCCA 1 cut(s) 339
BanI GGYRCC 1 cut(s) 39
BbsI GAAGAC 1 cut(s) 17
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 367, 377
BccI CCATC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 101
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 1 cut(s) 324
BfrI CTTAAG 1 cut(s) 149
BglI GCCNNNNNGGC 1 cut(s) 394
BisI GCNGC 2 cut(s) 366, 381
BlsI GCNGC 2 cut(s) 367, 382
Bme1390I CCNGG 1 cut(s) 101
Bme18I GGWCC 3 cut(s) 104, 139, 472
BmgT120I GGNCC 4 cut(s) 104, 139, 286, 472
BmiI GGNNCC 4 cut(s) 41, 105, 140, 288
BmrFI CCNGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 253
BpiI GAAGAC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 255
BpuEI CTTGAG 3 cut(s) 57, 103, 195
BsaJI CCNNGG 2 cut(s) 100, 203
Bsc4I CCNNNNNNNGG 3 cut(s) 84, 233, 234
Bse118I RCCGGY 1 cut(s) 77
Bse1I ACTGG 3 cut(s) 272, 389, 435
Bse3DI GCAATG 1 cut(s) 345
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 2 cut(s) 100, 203
BseGI GGATG 1 cut(s) 268
BseLI CCNNNNNNNGG 3 cut(s) 84, 233, 234
BseMI GCAATG 1 cut(s) 345
BseNI ACTGG 3 cut(s) 272, 389, 435
BseXI GCAGC 2 cut(s) 367, 377
BshFI GGCC 2 cut(s) 287, 339
BshNI GGYRCC 1 cut(s) 39
BsiHKAI GWGCWC 1 cut(s) 312
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 152
BslI CCNNNNNNNGG 3 cut(s) 84, 233, 234
BsmFI GGGAC 1 cut(s) 152
BsnI GGCC 2 cut(s) 287, 339
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 49, 241
BspANI GGCC 2 cut(s) 287, 339
BspLI GGNNCC 4 cut(s) 41, 105, 140, 288
BspPI GGATC 2 cut(s) 57, 249
BspT107I GGYRCC 1 cut(s) 39
BspTI CTTAAG 1 cut(s) 149
BsrDI GCAATG 1 cut(s) 345
BsrFI RCCGGY 1 cut(s) 77
BsrI ACTGG 3 cut(s) 272, 389, 435
BssAI RCCGGY 1 cut(s) 77
BssECI CCNNGG 2 cut(s) 100, 203
BssMI GATC 2 cut(s) 49, 241
BssT1I CCWWGG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 101
Bst4CI ACNGT 1 cut(s) 258
BstAFI CTTAAG 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 282
BstF5I GGATG 1 cut(s) 268
BstKTI GATC 2 cut(s) 52, 244
BstMBI GATC 2 cut(s) 49, 241
BstMWI GCNNNNNNNGC 1 cut(s) 394
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 367, 377
BstV2I GAAGAC 1 cut(s) 17
BstX2I RGATCY 1 cut(s) 49
BstYI RGATCY 1 cut(s) 49
BsuRI GGCC 2 cut(s) 287, 339
BtsCI GGATG 1 cut(s) 268
Cac8I GCNNGC 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 371
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 4 cut(s) 104, 139, 286, 472
CviAII CATG 2 cut(s) 46, 186
DdeI CTNAG 1 cut(s) 282
DpnI GATC 2 cut(s) 51, 243
DpnII GATC 2 cut(s) 49, 241
EaeI YGGCCR 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 203
Eco47I GGWCC 3 cut(s) 104, 139, 472
EcoO109I RGGNCCY 3 cut(s) 104, 139, 286
EcoRII CCWGG 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 203
FaeI CATG 2 cut(s) 49, 189
FaiI YATR 6 cut(s) 9, 47, 123, 187, 332, 386
FaqI GGGAC 1 cut(s) 152
FatI CATG 2 cut(s) 45, 185
Fnu4HI GCNGC 2 cut(s) 366, 381
FokI GGATG 1 cut(s) 275
Fsp4HI GCNGC 2 cut(s) 366, 381
FspBI CTAG 1 cut(s) 324
GluI GCNGC 2 cut(s) 366, 381
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 2 cut(s) 287, 339
HapII CCGG 1 cut(s) 78
Hin1II CATG 2 cut(s) 49, 189
HinfI GANTC 2 cut(s) 208, 278
HpaII CCGG 1 cut(s) 78
HphI GGTGA 1 cut(s) 481
Hpy166II GTNNAC 1 cut(s) 489
Hpy188I TCNGA 2 cut(s) 241, 410
Hpy8I GTNNAC 1 cut(s) 489
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 94, 176, 350
HpyF10VI GCNNNNNNNGC 1 cut(s) 394
HpyF3I CTNAG 1 cut(s) 282
Hsp92II CATG 2 cut(s) 49, 189
KroI GCCGGC 1 cut(s) 77
KroNI GCCGGC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 49, 241
LpnPI CCDG 7 cut(s) 86, 91, 113, 285, 357, 402, 416
Lsp1109I GCAGC 2 cut(s) 367, 377
LweI GCATC 1 cut(s) 253
MaeI CTAG 1 cut(s) 324
MalI GATC 2 cut(s) 51, 243
MboI GATC 2 cut(s) 49, 241
MboII GAAGA 3 cut(s) 17, 174, 215
MflI RGATCY 1 cut(s) 49
MhlI GDGCHC 1 cut(s) 312
MlsI TGGCCA 1 cut(s) 339
MluCI AATT 3 cut(s) 95, 178, 355
MluNI TGGCCA 1 cut(s) 339
MlyI GAGTC 1 cut(s) 202
MmeI TCCRAC 3 cut(s) 141, 219, 240
MnlI CCTC 6 cut(s) 14, 39, 53, 78, 152, 161
Mox20I TGGCCA 1 cut(s) 339
MroNI GCCGGC 1 cut(s) 77
MscI TGGCCA 1 cut(s) 339
MseI TTAA 2 cut(s) 57, 150
Msp20I TGGCCA 1 cut(s) 339
MspCI CTTAAG 1 cut(s) 149
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
MwoI GCNNNNNNNGC 1 cut(s) 394
NaeI GCCGGC 1 cut(s) 79
NdeII GATC 2 cut(s) 49, 241
NgoMIV GCCGGC 1 cut(s) 77
NlaIII CATG 2 cut(s) 49, 189
NlaIV GGNNCC 4 cut(s) 41, 105, 140, 288
PdiI GCCGGC 1 cut(s) 79
PfeI GAWTC 1 cut(s) 278
PkrI GCNGC 2 cut(s) 367, 382
PleI GAGTC 1 cut(s) 202
PpsI GAGTC 1 cut(s) 202
PpuMI RGGWCCY 2 cut(s) 104, 139
Psp5II RGGWCCY 2 cut(s) 104, 139
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspN4I GGNNCC 4 cut(s) 41, 105, 140, 288
PspPI GGNCC 4 cut(s) 104, 139, 286, 472
PspPPI RGGWCCY 2 cut(s) 104, 139
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 1 cut(s) 49
SaqAI TTAA 2 cut(s) 57, 150
SatI GCNGC 2 cut(s) 366, 381
Sau3AI GATC 2 cut(s) 49, 241
Sau96I GGNCC 4 cut(s) 104, 139, 286, 472
SchI GAGTC 1 cut(s) 202
ScrFI CCNGG 1 cut(s) 101
SduI GDGCHC 1 cut(s) 312
SetI ASST 7 cut(s) 25, 144, 172, 370, 415, 423, 494
SfaNI GCATC 1 cut(s) 253
SinI GGWCC 3 cut(s) 104, 139, 472
SmlI CTYRAG 4 cut(s) 72, 82, 149, 210
SmoI CTYRAG 4 cut(s) 72, 82, 149, 210
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 3 cut(s) 95, 178, 355
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 99
StyI CCWWGG 1 cut(s) 203
TaaI ACNGT 1 cut(s) 258
TasI AATT 3 cut(s) 95, 178, 355
TfiI GAWTC 1 cut(s) 278
Tru1I TTAA 2 cut(s) 57, 150
Tru9I TTAA 2 cut(s) 57, 150
TseI GCWGC 2 cut(s) 365, 380
TspDTI ATGAA 2 cut(s) 55, 174
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 3 cut(s) 104, 139, 472
XapI RAATTY 1 cut(s) 178
XspI CTAG 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.