RchiOBHm_Chr1g0316031

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000147
Physical Location & Seq
Forward (+)
3287859 .. 3288990
1132 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54649

Sequence Viewer

Length: 684 bp
ATGCAAGCCAACAATCTCATAGATATCCAATTCAAGGGGCAGCAATTCACATGGAGCAACAATTGGCCAAATGGGGGACTAATCAAAATTAGATTGGACCGAAGTGTTGTTAATGCGAGTTGGATTGAGTGTTGGCCTGCCTCAAGCATTTTCCACTCTCCTATGATCGGTTCTGATCATTTCCCTTTAGTCATTGATATTGATCCTCCAAGTGTGAAAGGACCAAAACCTTTCAAATTTGAGCCTAGTTGGATTGAAGCCCCAGAGTGCGGGGAAGTTATATCGGAAGCCTGGTCTAATCAAATGGGAGATAATTTTGCTCAACAACAGTGGACAACAAATCTCTATCAGTGTAGCAAGGCCTTACGACACTGGAGTAAGAAGTTCTCAAACAATAGAAGAAGGATTGACTGCAATATTGAGAAGCTTCAAGTTATACAGTCAAGTTCAGATCCGGAAGCTAGGAAGCTTGCTAGCAGTCTCACTGAAGAACTTGCATCCCTCTGGGACAAAGAGGAAAAATATTGGGCTCAGAGATCAAGAATTAAGTGGCTCAAGACAGGGGATTCCAACTCAAGATTTTTCCACCTCACCACCATCCATCGTAGGCAAAGGAATAAGGTGTTAAAGTCAAGGATTAATTTCAGTTTACCTACTCCAACTTTAGGCCAATCTTCATGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

227

Amino Acids

26.3

Weight (kDa)

9.38

Isoelectric Point (pI)

58.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 454
AciI CCGC 1 cut(s) 270
AclWI GGATC 2 cut(s) 197, 446
AcoI YGGCCR 1 cut(s) 65
AcsI RAATTY 1 cut(s) 236
AcuI CTGAAG 1 cut(s) 507
AfiI CCNNNNNNNGG 5 cut(s) 34, 74, 167, 269, 665
AgsI TTSAA 4 cut(s) 34, 235, 257, 431
AjnI CCWGG 1 cut(s) 290
AluBI AGCT 3 cut(s) 427, 461, 469
AluI AGCT 3 cut(s) 427, 461, 469
Alw26I GTCTC 1 cut(s) 485
AlwI GGATC 2 cut(s) 197, 446
Aor13HI TCCGGA 1 cut(s) 454
AoxI GGCC 4 cut(s) 65, 134, 360, 667
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 236
AseI ATTAAT 1 cut(s) 639
AspS9I GGNCC 2 cut(s) 97, 221
AsuHPI GGTGA 1 cut(s) 583
AsuNHI GCTAGC 1 cut(s) 473
AvaII GGWCC 2 cut(s) 97, 221
BalI TGGCCA 1 cut(s) 67
BanII GRGCYC 1 cut(s) 532
BbvI GCAGC 1 cut(s) 52
BccI CCATC 2 cut(s) 605, 609
BciT130I CCWGG 1 cut(s) 292
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 1 cut(s) 485
BfaI CTAG 3 cut(s) 246, 462, 474
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 1 cut(s) 292
Bme18I GGWCC 2 cut(s) 97, 221
BmgT120I GGNCC 2 cut(s) 97, 221
BmrFI CCNGG 1 cut(s) 292
BmsI GCATC 1 cut(s) 506
BmtI GCTAGC 1 cut(s) 477
BpmI CTGGAG 1 cut(s) 394
BpuEI CTTGAG 3 cut(s) 127, 539, 559
BsaBI GATNNNNATC 1 cut(s) 201
BsaWI WCCGGW 1 cut(s) 454
Bsc4I CCNNNNNNNGG 5 cut(s) 34, 74, 167, 269, 665
Bse1I ACTGG 1 cut(s) 377
Bse8I GATNNNNATC 1 cut(s) 201
BseAI TCCGGA 1 cut(s) 454
BseBI CCWGG 1 cut(s) 292
BseGI GGATG 2 cut(s) 497, 597
BseJI GATNNNNATC 1 cut(s) 201
BseLI CCNNNNNNNGG 5 cut(s) 34, 74, 167, 269, 665
BseMII CTCAG 1 cut(s) 545
BseNI ACTGG 1 cut(s) 377
BseXI GCAGC 1 cut(s) 52
BshFI GGCC 4 cut(s) 67, 136, 362, 669
BsiSI CCGG 1 cut(s) 455
BslFI GGGAC 2 cut(s) 90, 521
BslI CCNNNNNNNGG 5 cut(s) 34, 74, 167, 269, 665
BsmAI GTCTC 1 cut(s) 485
BsmFI GGGAC 2 cut(s) 90, 521
BsnI GGCC 4 cut(s) 67, 136, 362, 669
Bsp1286I GDGCHC 1 cut(s) 532
Bsp13I TCCGGA 1 cut(s) 454
Bsp143I GATC 5 cut(s) 165, 175, 202, 451, 536
BspACI CCGC 1 cut(s) 270
BspANI GGCC 4 cut(s) 67, 136, 362, 669
BspCNI CTCAG 1 cut(s) 544
BspEI TCCGGA 1 cut(s) 454
BspOI GCTAGC 1 cut(s) 477
BspPI GGATC 2 cut(s) 197, 446
BsrI ACTGG 1 cut(s) 377
BssMI GATC 5 cut(s) 165, 175, 202, 451, 536
Bst2UI CCWGG 1 cut(s) 292
Bst4CI ACNGT 2 cut(s) 330, 441
BstC8I GCNNGC 4 cut(s) 6, 138, 471, 475
BstDEI CTNAG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 497, 597
BstKTI GATC 5 cut(s) 168, 178, 205, 454, 539
BstMAI GTCTC 1 cut(s) 485
BstMBI GATC 5 cut(s) 165, 175, 202, 451, 536
BstNI CCWGG 1 cut(s) 292
BstSCI CCNGG 1 cut(s) 290
BstV1I GCAGC 1 cut(s) 52
BstX2I RGATCY 1 cut(s) 451
BstYI RGATCY 1 cut(s) 451
BsuRI GGCC 4 cut(s) 67, 136, 362, 669
BtsCI GGATG 2 cut(s) 497, 597
BtsIMutI CAGTG 4 cut(s) 335, 356, 370, 483
Cac8I GCNNGC 4 cut(s) 6, 138, 471, 475
Cfr13I GGNCC 2 cut(s) 97, 221
CspCI CAANNNNNGTGG 2 cut(s) 311, 346
CviAII CATG 2 cut(s) 51, 678
DdeI CTNAG 1 cut(s) 531
DpnI GATC 5 cut(s) 167, 177, 204, 453, 538
DpnII GATC 5 cut(s) 165, 175, 202, 451, 536
EaeI YGGCCR 1 cut(s) 65
Eco147I AGGCCT 1 cut(s) 362
Eco24I GRGCYC 1 cut(s) 532
Eco32I GATATC 1 cut(s) 25
Eco47I GGWCC 2 cut(s) 97, 221
Eco57I CTGAAG 1 cut(s) 507
EcoRII CCWGG 1 cut(s) 290
EcoRV GATATC 1 cut(s) 25
EcoT38I GRGCYC 1 cut(s) 532
FaeI CATG 2 cut(s) 54, 681
FaiI YATR 6 cut(s) 20, 52, 164, 281, 437, 679
FaqI GGGAC 2 cut(s) 90, 521
FatI CATG 2 cut(s) 50, 677
FauI CCCGC 1 cut(s) 263
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 2 cut(s) 484, 584
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 3 cut(s) 246, 462, 474
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 394
HaeIII GGCC 4 cut(s) 67, 136, 362, 669
HapII CCGG 1 cut(s) 455
Hin1II CATG 2 cut(s) 54, 681
HindIII AAGCTT 2 cut(s) 425, 467
HinfI GANTC 1 cut(s) 566
HpaII CCGG 1 cut(s) 455
HphI GGTGA 1 cut(s) 583
Hpy166II GTNNAC 2 cut(s) 333, 650
Hpy188I TCNGA 4 cut(s) 175, 286, 451, 534
Hpy188III TCNNGA 4 cut(s) 455, 540, 556, 576
Hpy8I GTNNAC 2 cut(s) 333, 650
HpyAV CCTTC 1 cut(s) 396
HpyCH4III ACNGT 2 cut(s) 330, 441
HpyCH4V TGCA 3 cut(s) 4, 414, 497
HpyF3I CTNAG 1 cut(s) 531
Hsp92II CATG 2 cut(s) 54, 681
Kpn2I TCCGGA 1 cut(s) 454
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 5 cut(s) 165, 175, 202, 451, 536
LmnI GCTCC 1 cut(s) 54
LpnPI CCDG 8 cut(s) 150, 276, 277, 304, 358, 468, 490, 546
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 1 cut(s) 506
MaeI CTAG 3 cut(s) 246, 462, 474
MalI GATC 5 cut(s) 167, 177, 204, 453, 538
MboI GATC 5 cut(s) 165, 175, 202, 451, 536
MboII GAAGA 3 cut(s) 411, 500, 666
MfeI CAATTG 1 cut(s) 61
MflI RGATCY 1 cut(s) 451
MhlI GDGCHC 1 cut(s) 532
MlsI TGGCCA 1 cut(s) 67
MluCI AATT 8 cut(s) 29, 44, 61, 87, 236, 313, 543, 640
MluNI TGGCCA 1 cut(s) 67
MmeI TCCRAC 4 cut(s) 101, 230, 594, 683
MnlI CCTC 5 cut(s) 151, 216, 508, 512, 599
Mox20I TGGCCA 1 cut(s) 67
MroI TCCGGA 1 cut(s) 454
MscI TGGCCA 1 cut(s) 67
MseI TTAA 4 cut(s) 111, 546, 626, 639
Msp20I TGGCCA 1 cut(s) 67
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 292
MunI CAATTG 1 cut(s) 61
MvaI CCWGG 1 cut(s) 292
NdeII GATC 5 cut(s) 165, 175, 202, 451, 536
NheI GCTAGC 1 cut(s) 473
NlaIII CATG 2 cut(s) 54, 681
PceI AGGCCT 1 cut(s) 362
PfeI GAWTC 1 cut(s) 566
PkrI GCNGC 1 cut(s) 42
PshBI ATTAAT 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 290
PspGI CCWGG 1 cut(s) 290
PspPI GGNCC 2 cut(s) 97, 221
PsuI RGATCY 1 cut(s) 451
SaqAI TTAA 4 cut(s) 111, 546, 626, 639
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 5 cut(s) 165, 175, 202, 451, 536
Sau96I GGNCC 2 cut(s) 97, 221
ScrFI CCNGG 1 cut(s) 292
SduI GDGCHC 1 cut(s) 532
SetI ASST 7 cut(s) 232, 429, 463, 471, 591, 624, 655
SfaNI GCATC 1 cut(s) 506
SinI GGWCC 2 cut(s) 97, 221
SmlI CTYRAG 3 cut(s) 142, 554, 574
SmoI CTYRAG 3 cut(s) 142, 554, 574
Sse9I AATT 8 cut(s) 29, 44, 61, 87, 236, 313, 543, 640
SseBI AGGCCT 1 cut(s) 362
SsiI CCGC 1 cut(s) 270
SspI AATATT 2 cut(s) 418, 524
SspMI CTAG 3 cut(s) 246, 462, 474
StuI AGGCCT 1 cut(s) 362
StyD4I CCNGG 1 cut(s) 290
TaaI ACNGT 2 cut(s) 330, 441
TaqII GACCGA 1 cut(s) 114
TasI AATT 8 cut(s) 29, 44, 61, 87, 236, 313, 543, 640
TfiI GAWTC 1 cut(s) 566
Tru1I TTAA 4 cut(s) 111, 546, 626, 639
Tru9I TTAA 4 cut(s) 111, 546, 626, 639
TscAI CASTG 4 cut(s) 335, 356, 377, 490
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 1 cut(s) 666
TspRI CASTG 4 cut(s) 335, 356, 377, 490
VpaK11BI GGWCC 2 cut(s) 97, 221
VspI ATTAAT 1 cut(s) 639
XapI RAATTY 1 cut(s) 236
XspI CTAG 3 cut(s) 246, 462, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.