Rh2CG354300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0000147
Physical Location & Seq
Forward (+)
47985443 .. 47991464
6022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG354300.1

Sequence Viewer

Length: 531 bp
ATGAATGAGGAGTTTGGCATGAACATTAGTTTGATACATGATTCTCTCCCACTGCATGCCCAAGGGCCGGAGATAGTTTTACCTAATCCGGAAACGTCGACCACTGATATGCCACTTGTGGTGGCTCCGGAGGATCCCGAGCCGCTGGCCATTGTTCCTCCTCCTCCTGATGGTGTTCACGATGCTTTGGTGGCTGCTTATCTAGTTGATGATGACCAGGATGCTTTTGCTGGTGATATGGCAGCTGAGGATGGCCAGGAGGATGACGCATATTTGGATGATGATGTTAATCTTGATGAGGATGTGGACATTGAGGAGTGTGACTTCTCGTCCCAAGTCTGGGCCTTATCGCCATTTCCTTCTCCACTCACATGGACCAACCTAGTAATATGGAATGGTTCCTTTGGAGGCTTTTCAGCATGCCCTGTTACTAGGTTGGTCCATTTGATTTGCGAGGAACCAGCTTATCTTCTAGCAGAAGCAACCCTTTCCTCAGCGTACTTTCTTTACTGCGATCGTGGTAGGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

19.15

Weight (kDa)

4.05

Isoelectric Point (pI)

63.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 98
AccIII TCCGGA 2 cut(s) 88, 127
AciI CCGC 1 cut(s) 143
AclWI GGATC 2 cut(s) 128, 141
AcoI YGGCCR 2 cut(s) 147, 253
AfaI GTAC 1 cut(s) 500
AfiI CCNNNNNNNGG 4 cut(s) 67, 170, 339, 340
AhdI GACNNNNNGTC 1 cut(s) 328
AjnI CCWGG 2 cut(s) 216, 255
AluBI AGCT 2 cut(s) 245, 464
AluI AGCT 2 cut(s) 245, 464
AlwI GGATC 2 cut(s) 128, 141
Ama87I CYCGRG 1 cut(s) 137
Aor13HI TCCGGA 2 cut(s) 88, 127
AoxI GGCC 4 cut(s) 65, 147, 253, 342
ApeKI GCWGC 2 cut(s) 194, 242
AspS9I GGNCC 4 cut(s) 65, 342, 375, 439
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 137
AvaII GGWCC 2 cut(s) 375, 439
BalI TGGCCA 2 cut(s) 149, 255
BamHI GGATCC 1 cut(s) 133
BbvCI CCTCAGC 2 cut(s) 246, 493
BbvI GCAGC 2 cut(s) 181, 254
BccI CCATC 2 cut(s) 164, 245
BciT130I CCWGG 2 cut(s) 218, 257
BfaI CTAG 4 cut(s) 203, 383, 432, 473
BisI GCNGC 3 cut(s) 143, 195, 243
BlsI GCNGC 3 cut(s) 144, 196, 244
Bme1390I CCNGG 2 cut(s) 218, 257
Bme18I GGWCC 2 cut(s) 375, 439
BmeRI GACNNNNNGTC 1 cut(s) 328
BmeT110I CYCGRG 1 cut(s) 137
BmgT120I GGNCC 4 cut(s) 65, 342, 375, 439
BmiI GGNNCC 4 cut(s) 126, 135, 400, 459
BmrFI CCNGG 2 cut(s) 218, 257
BmsI GCATC 2 cut(s) 172, 211
Bpu10I CCTNAGC 2 cut(s) 246, 493
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 61
BsaWI WCCGGW 2 cut(s) 88, 127
Bsc4I CCNNNNNNNGG 4 cut(s) 67, 170, 339, 340
Bse8I GATNNNNATC 1 cut(s) 288
BseAI TCCGGA 2 cut(s) 88, 127
BseBI CCWGG 2 cut(s) 218, 257
BseDI CCNNGG 1 cut(s) 61
BseGI GGATG 5 cut(s) 226, 256, 268, 283, 307
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 4 cut(s) 67, 170, 339, 340
BseMII CTCAG 2 cut(s) 237, 507
BseRI GAGGAG 4 cut(s) 23, 150, 153, 329
BseXI GCAGC 2 cut(s) 181, 254
Bsh1285I CGRYCG 1 cut(s) 517
BshFI GGCC 4 cut(s) 67, 149, 255, 344
BsiEI CGRYCG 1 cut(s) 517
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 3 cut(s) 68, 89, 128
BslFI GGGAC 1 cut(s) 316
BslI CCNNNNNNNGG 4 cut(s) 67, 170, 339, 340
BsmFI GGGAC 1 cut(s) 316
BsnI GGCC 4 cut(s) 67, 149, 255, 344
BsoBI CYCGRG 1 cut(s) 137
Bsp13I TCCGGA 2 cut(s) 88, 127
Bsp143I GATC 2 cut(s) 133, 514
BspACI CCGC 1 cut(s) 143
BspANI GGCC 4 cut(s) 67, 149, 255, 344
BspCNI CTCAG 2 cut(s) 238, 506
BspEI TCCGGA 2 cut(s) 88, 127
BspLI GGNNCC 4 cut(s) 126, 135, 400, 459
BspPI GGATC 2 cut(s) 128, 141
BssECI CCNNGG 1 cut(s) 61
BssMI GATC 2 cut(s) 133, 514
BssT1I CCWWGG 1 cut(s) 61
Bst2UI CCWGG 2 cut(s) 218, 257
BstC8I GCNNGC 3 cut(s) 57, 147, 421
BstDEI CTNAG 2 cut(s) 246, 493
BstF5I GGATG 5 cut(s) 226, 256, 268, 283, 307
BstKTI GATC 2 cut(s) 136, 517
BstMBI GATC 2 cut(s) 133, 514
BstMCI CGRYCG 1 cut(s) 517
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 2 cut(s) 218, 257
BstNSI RCATGY 2 cut(s) 59, 423
BstSCI CCNGG 2 cut(s) 216, 255
BstV1I GCAGC 2 cut(s) 181, 254
BstX2I RGATCY 1 cut(s) 133
BstXI CCANNNNNNTGG 1 cut(s) 372
BstYI RGATCY 1 cut(s) 133
BsuRI GGCC 4 cut(s) 67, 149, 255, 344
BtsCI GGATG 5 cut(s) 226, 256, 268, 283, 307
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 2 cut(s) 50, 102
Cac8I GCNNGC 3 cut(s) 57, 147, 421
Cfr13I GGNCC 4 cut(s) 65, 342, 375, 439
CseI GACGC 1 cut(s) 275
Csp6I GTAC 1 cut(s) 499
CviAII CATG 5 cut(s) 19, 38, 56, 372, 420
CviQI GTAC 1 cut(s) 499
DdeI CTNAG 2 cut(s) 246, 493
DpnI GATC 2 cut(s) 135, 516
DpnII GATC 2 cut(s) 133, 514
DriI GACNNNNNGTC 1 cut(s) 328
EaeI YGGCCR 2 cut(s) 147, 253
Eam1105I GACNNNNNGTC 1 cut(s) 328
Eco130I CCWWGG 1 cut(s) 61
Eco47I GGWCC 2 cut(s) 375, 439
Eco88I CYCGRG 1 cut(s) 137
EcoRII CCWGG 2 cut(s) 216, 255
EcoT14I CCWWGG 1 cut(s) 61
ErhI CCWWGG 1 cut(s) 61
FaeI CATG 5 cut(s) 22, 41, 59, 375, 423
FaiI YATR 9 cut(s) 20, 39, 57, 110, 239, 271, 373, 391, 421
FalI AAGNNNNNCTT 2 cut(s) 471, 503
FaqI GGGAC 1 cut(s) 316
FatI CATG 5 cut(s) 18, 37, 55, 371, 419
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 3 cut(s) 143, 195, 243
FokI GGATG 5 cut(s) 233, 263, 275, 290, 314
Fsp4HI GCNGC 3 cut(s) 143, 195, 243
FspBI CTAG 4 cut(s) 203, 383, 432, 473
GluI GCNGC 3 cut(s) 143, 195, 243
HaeIII GGCC 4 cut(s) 67, 149, 255, 344
HapII CCGG 3 cut(s) 68, 89, 128
HgaI GACGC 1 cut(s) 275
Hin1II CATG 5 cut(s) 22, 41, 59, 375, 423
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 1 cut(s) 41
HpaII CCGG 3 cut(s) 68, 89, 128
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 3 cut(s) 99, 178, 307
Hpy188III TCNNGA 6 cut(s) 89, 128, 137, 167, 179, 293
Hpy8I GTNNAC 3 cut(s) 99, 178, 307
Hpy99I CGWCG 1 cut(s) 100
HpyAV CCTTC 1 cut(s) 369
HpyCH4IV ACGT 1 cut(s) 95
HpyCH4V TGCA 1 cut(s) 55
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 2 cut(s) 246, 493
HpySE526I ACGT 1 cut(s) 95
Hsp92II CATG 5 cut(s) 22, 41, 59, 375, 423
Kpn2I TCCGGA 2 cut(s) 88, 127
Kzo9I GATC 2 cut(s) 133, 514
LmnI GCTCC 1 cut(s) 130
Lsp1109I GCAGC 2 cut(s) 181, 254
LweI GCATC 2 cut(s) 172, 211
MaeI CTAG 4 cut(s) 203, 383, 432, 473
MaeII ACGT 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 320, 427
MalI GATC 2 cut(s) 135, 516
MboI GATC 2 cut(s) 133, 514
MboII GAAGA 1 cut(s) 461
MflI RGATCY 1 cut(s) 133
MlsI TGGCCA 2 cut(s) 149, 255
MluNI TGGCCA 2 cut(s) 149, 255
Mox20I TGGCCA 2 cut(s) 149, 255
MroI TCCGGA 2 cut(s) 88, 127
MscI TGGCCA 2 cut(s) 149, 255
MseI TTAA 2 cut(s) 288, 529
MslI CAYNNNNRTG 2 cut(s) 107, 370
Msp20I TGGCCA 2 cut(s) 149, 255
MspA1I CMGCKG 2 cut(s) 145, 245
MspI CCGG 3 cut(s) 68, 89, 128
MspR9I CCNGG 2 cut(s) 218, 257
MvaI CCWGG 2 cut(s) 218, 257
MwoI GCNNNNNNNGC 1 cut(s) 191
NdeII GATC 2 cut(s) 133, 514
NlaIII CATG 5 cut(s) 22, 41, 59, 375, 423
NlaIV GGNNCC 4 cut(s) 126, 135, 400, 459
NmuCI GTSAC 1 cut(s) 320
NspI RCATGY 2 cut(s) 59, 423
PaeI GCATGC 2 cut(s) 59, 423
PfeI GAWTC 1 cut(s) 41
PkrI GCNGC 3 cut(s) 144, 196, 244
Ple19I CGATCG 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 216, 255
PspGI CCWGG 2 cut(s) 216, 255
PspN4I GGNNCC 4 cut(s) 126, 135, 400, 459
PspPI GGNCC 4 cut(s) 65, 342, 375, 439
PsuI RGATCY 1 cut(s) 133
PvuI CGATCG 1 cut(s) 517
PvuII CAGCTG 1 cut(s) 245
RsaI GTAC 1 cut(s) 500
RsaNI GTAC 1 cut(s) 499
RseI CAYNNNNRTG 2 cut(s) 107, 370
SalI GTCGAC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 288, 529
SatI GCNGC 3 cut(s) 143, 195, 243
Sau3AI GATC 2 cut(s) 133, 514
Sau96I GGNCC 4 cut(s) 65, 342, 375, 439
ScrFI CCNGG 2 cut(s) 218, 257
SetI ASST 6 cut(s) 85, 98, 247, 384, 437, 466
SfaNI GCATC 2 cut(s) 172, 211
SinI GGWCC 2 cut(s) 375, 439
SmiMI CAYNNNNRTG 2 cut(s) 107, 370
SphI GCATGC 2 cut(s) 59, 423
SsiI CCGC 1 cut(s) 143
SspMI CTAG 4 cut(s) 203, 383, 432, 473
StyD4I CCNGG 2 cut(s) 216, 255
StyI CCWWGG 1 cut(s) 61
TaiI ACGT 1 cut(s) 98
TaqI TCGA 1 cut(s) 98
TauI GCSGC 1 cut(s) 145
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 2 cut(s) 288, 529
Tru9I TTAA 2 cut(s) 288, 529
TscAI CASTG 2 cut(s) 57, 109
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 2 cut(s) 194, 242
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 17, 35
TspRI CASTG 2 cut(s) 57, 109
VpaK11BI GGWCC 2 cut(s) 375, 439
XceI RCATGY 2 cut(s) 59, 423
XmiI GTMKAC 1 cut(s) 98
XspI CTAG 4 cut(s) 203, 383, 432, 473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.