Rroxscaffold_2G00110140

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000147
Physical Location & Seq
Reverse (-)
34376497 .. 34379172
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00110140.1

Sequence Viewer

Length: 771 bp
ATGCTTCTTTTGTGGCGGGTTCAATCATCCTATTGGGGCATGCCCATAGAGAGCTCCAAAGGGCGTAACTTTCTCATGCTTTCTCGTAGTGATCGTGAGCCCATCACTGTACCTGAGTCGTCAGAGCTTACTGCTCCTCTACCTACTAATGTGCCCGATGAAACCTTGTTGGTTTTTCCTATGATCCGAGGCTCGAATACTACTGCTGCCCCGATGTTTTGTCGTGCTAATCGACCTGATGATCAGCCCACTGTTCCCCTTGCCAACCCTCACGGGGACCGGGTTTTCCACGCACGCACTCGGGGCTCCCGACCCGTAAATCATAGACGTCAACCTCCTTCTTATGCTGAGGTCCGGGATAATACCTCATTTGCTGATGTGCTTCGCAATATGAATGAGGAGTTCGGTGTGAACATTAGTTCGATGCATGATTCTCTCCCACTGCATGCCCAAGGGCCGGAGATAGTTTTACCTAATCCGGAAACGTCGACCACTGATATGCCACTTGTGGTGGCTCCGGAGGATCCCGAGCCGCTGGCCATTGTTCCCCCTCCTCCTGATGGTGTTCACAATGCTTTGGTGGCTGCTCATCCAGTTGATGATGACCAGGATGATTTTGCTGGTGATATGGGTGCTGAGGATGGCTGGGAGGATGACGCATATTTGGATGATGATGTTGATCTTGATGAGGATGTGGACATTGTGGAGAGGATATGGCTCCTGGATTTGAGAAATCGGTTCAAATCAATGATTCTGTGGCCGATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

28.66

Weight (kDa)

4.4

Isoelectric Point (pI)

57.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 331
AccI GTMKAC 1 cut(s) 488
AccIII TCCGGA 2 cut(s) 478, 517
AciI CCGC 2 cut(s) 16, 533
AclWI GGATC 3 cut(s) 178, 518, 531
AcoI YGGCCR 2 cut(s) 537, 758
AcyI GRCGYC 1 cut(s) 328
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 3 cut(s) 274, 457, 560
AgsI TTSAA 2 cut(s) 23, 742
AjnI CCWGG 2 cut(s) 606, 720
AluBI AGCT 2 cut(s) 54, 127
AluI AGCT 2 cut(s) 54, 127
Alw21I GWGCWC 1 cut(s) 56
AlwI GGATC 3 cut(s) 178, 518, 531
Ama87I CYCGRG 2 cut(s) 300, 527
Aor13HI TCCGGA 2 cut(s) 478, 517
AoxI GGCC 3 cut(s) 455, 537, 758
ApeKI GCWGC 2 cut(s) 206, 584
AspS9I GGNCC 3 cut(s) 277, 352, 455
AsuC2I CCSGG 2 cut(s) 281, 356
AsuHPI GGTGA 1 cut(s) 635
AvaI CYCGRG 2 cut(s) 300, 527
AvaII GGWCC 2 cut(s) 277, 352
BaeGI GKGCMC 1 cut(s) 156
BalI TGGCCA 1 cut(s) 539
BamHI GGATCC 1 cut(s) 523
BanII GRGCYC 3 cut(s) 56, 102, 308
Bbv12I GWGCWC 1 cut(s) 56
BbvCI CCTCAGC 2 cut(s) 348, 636
BbvI GCAGC 2 cut(s) 193, 571
BccI CCATC 3 cut(s) 110, 554, 635
BciT130I CCWGG 2 cut(s) 608, 722
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 2 cut(s) 281, 356
BisI GCNGC 3 cut(s) 207, 533, 585
BlsI GCNGC 3 cut(s) 208, 534, 586
Bme1390I CCNGG 4 cut(s) 281, 356, 608, 722
Bme18I GGWCC 2 cut(s) 277, 352
BmeT110I CYCGRG 2 cut(s) 300, 527
BmgT120I GGNCC 3 cut(s) 277, 352, 455
BmiI GGNNCC 5 cut(s) 278, 307, 516, 525, 719
BmrFI CCNGG 4 cut(s) 281, 356, 608, 722
BmsI GCATC 2 cut(s) 414, 753
Bpu10I CCTNAGC 2 cut(s) 348, 636
BpuMI CCSGG 2 cut(s) 281, 356
BsaBI GATNNNNATC 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 328
BsaJI CCNNGG 2 cut(s) 187, 451
BsaWI WCCGGW 2 cut(s) 478, 517
Bsc4I CCNNNNNNNGG 3 cut(s) 274, 457, 560
Bse1I ACTGG 1 cut(s) 593
Bse8I GATNNNNATC 1 cut(s) 678
BseAI TCCGGA 2 cut(s) 478, 517
BseBI CCWGG 2 cut(s) 608, 722
BseDI CCNNGG 2 cut(s) 187, 451
BseGI GGATG 7 cut(s) 26, 589, 616, 646, 658, 673, 697
BseJI GATNNNNATC 1 cut(s) 678
BseLI CCNNNNNNNGG 3 cut(s) 274, 457, 560
BseMII CTCAG 3 cut(s) 105, 339, 627
BseNI ACTGG 1 cut(s) 593
BseRI GAGGAG 3 cut(s) 126, 413, 543
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 2 cut(s) 193, 571
BseYI CCCAGC 1 cut(s) 645
BshFI GGCC 3 cut(s) 457, 539, 760
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 2 cut(s) 300, 527
BsiSI CCGG 5 cut(s) 280, 355, 458, 479, 518
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 3 cut(s) 274, 457, 560
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 3 cut(s) 457, 539, 760
BsoBI CYCGRG 2 cut(s) 300, 527
Bsp1286I GDGCHC 4 cut(s) 56, 102, 156, 308
Bsp13I TCCGGA 2 cut(s) 478, 517
Bsp143I GATC 5 cut(s) 91, 183, 241, 523, 679
BspACI CCGC 2 cut(s) 16, 533
BspANI GGCC 3 cut(s) 457, 539, 760
BspCNI CTCAG 3 cut(s) 106, 340, 628
BspEI TCCGGA 2 cut(s) 478, 517
BspLI GGNNCC 5 cut(s) 278, 307, 516, 525, 719
BspPI GGATC 3 cut(s) 178, 518, 531
BsrI ACTGG 1 cut(s) 593
BssECI CCNNGG 2 cut(s) 187, 451
BssMI GATC 5 cut(s) 91, 183, 241, 523, 679
BssNI GRCGYC 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 451
Bst2UI CCWGG 2 cut(s) 608, 722
Bst4CI ACNGT 2 cut(s) 109, 253
BstACI GRCGYC 1 cut(s) 328
BstC8I GCNNGC 4 cut(s) 41, 295, 447, 537
BstDEI CTNAG 3 cut(s) 114, 348, 636
BstF5I GGATG 7 cut(s) 26, 589, 616, 646, 658, 673, 697
BstKTI GATC 5 cut(s) 94, 186, 244, 526, 682
BstMBI GATC 5 cut(s) 91, 183, 241, 523, 679
BstMWI GCNNNNNNNGC 2 cut(s) 303, 581
BstNI CCWGG 2 cut(s) 608, 722
BstNSI RCATGY 2 cut(s) 43, 449
BstSCI CCNGG 4 cut(s) 279, 354, 606, 720
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 193, 571
BstX2I RGATCY 1 cut(s) 523
BstYI RGATCY 1 cut(s) 523
BsuRI GGCC 3 cut(s) 457, 539, 760
BtsCI GGATG 7 cut(s) 26, 589, 616, 646, 658, 673, 697
BtsI GCAGTG 1 cut(s) 440
BtsIMutI CAGTG 4 cut(s) 105, 249, 440, 492
Cac8I GCNNGC 4 cut(s) 41, 295, 447, 537
Cfr13I GGNCC 3 cut(s) 277, 352, 455
CseI GACGC 1 cut(s) 665
Csp6I GTAC 1 cut(s) 110
CviAII CATG 4 cut(s) 40, 76, 428, 446
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 3 cut(s) 114, 348, 636
DpnI GATC 5 cut(s) 93, 185, 243, 525, 681
DpnII GATC 5 cut(s) 91, 183, 241, 523, 679
EaeI YGGCCR 2 cut(s) 537, 758
Ecl136II GAGCTC 1 cut(s) 54
Eco130I CCWWGG 1 cut(s) 451
Eco24I GRGCYC 3 cut(s) 56, 102, 308
Eco47I GGWCC 2 cut(s) 277, 352
Eco53kI GAGCTC 1 cut(s) 54
Eco88I CYCGRG 2 cut(s) 300, 527
EcoICRI GAGCTC 1 cut(s) 54
EcoRII CCWGG 2 cut(s) 606, 720
EcoT14I CCWWGG 1 cut(s) 451
EcoT22I ATGCAT 1 cut(s) 429
EcoT38I GRGCYC 3 cut(s) 56, 102, 308
ErhI CCWWGG 1 cut(s) 451
FaeI CATG 4 cut(s) 43, 79, 431, 449
FaqI GGGAC 1 cut(s) 290
FatI CATG 4 cut(s) 39, 75, 427, 445
FauI CCCGC 1 cut(s) 9
FbaI TGATCA 1 cut(s) 241
FblI GTMKAC 1 cut(s) 488
Fnu4HI GCNGC 3 cut(s) 207, 533, 585
FokI GGATG 7 cut(s) 13, 576, 623, 653, 665, 680, 704
FriOI GRGCYC 3 cut(s) 56, 102, 308
Fsp4HI GCNGC 3 cut(s) 207, 533, 585
GluI GCNGC 3 cut(s) 207, 533, 585
GsaI CCCAGC 1 cut(s) 649
HaeIII GGCC 3 cut(s) 457, 539, 760
HapII CCGG 5 cut(s) 280, 355, 458, 479, 518
HgaI GACGC 1 cut(s) 665
Hin1I GRCGYC 1 cut(s) 328
Hin1II CATG 4 cut(s) 43, 79, 431, 449
HincII GTYRAC 2 cut(s) 332, 489
HindII GTYRAC 2 cut(s) 332, 489
HinfI GANTC 3 cut(s) 116, 431, 751
HpaII CCGG 5 cut(s) 280, 355, 458, 479, 518
HphI GGTGA 1 cut(s) 635
Hpy166II GTNNAC 5 cut(s) 332, 412, 489, 568, 697
Hpy188I TCNGA 2 cut(s) 124, 188
Hpy188III TCNNGA 7 cut(s) 95, 309, 479, 518, 527, 557, 683
Hpy8I GTNNAC 5 cut(s) 332, 412, 489, 568, 697
Hpy99I CGWCG 1 cut(s) 490
HpyAV CCTTC 1 cut(s) 348
HpyCH4III ACNGT 2 cut(s) 109, 253
HpyCH4IV ACGT 2 cut(s) 328, 485
HpyCH4V TGCA 2 cut(s) 427, 445
HpyF10VI GCNNNNNNNGC 2 cut(s) 303, 581
HpyF3I CTNAG 3 cut(s) 114, 348, 636
HpySE526I ACGT 2 cut(s) 328, 485
Hsp92I GRCGYC 1 cut(s) 328
Hsp92II CATG 4 cut(s) 43, 79, 431, 449
Kpn2I TCCGGA 2 cut(s) 478, 517
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 5 cut(s) 91, 183, 241, 523, 679
LmnI GCTCC 5 cut(s) 59, 139, 311, 520, 723
Lsp1109I GCAGC 2 cut(s) 193, 571
LweI GCATC 2 cut(s) 414, 753
MaeII ACGT 2 cut(s) 328, 485
MaeIII GTNAC 1 cut(s) 65
MalI GATC 5 cut(s) 93, 185, 243, 525, 681
MboI GATC 5 cut(s) 91, 183, 241, 523, 679
MflI RGATCY 1 cut(s) 523
MhlI GDGCHC 4 cut(s) 56, 102, 156, 308
MlsI TGGCCA 1 cut(s) 539
MluNI TGGCCA 1 cut(s) 539
MlyI GAGTC 1 cut(s) 125
Mox20I TGGCCA 1 cut(s) 539
Mph1103I ATGCAT 1 cut(s) 429
MroI TCCGGA 2 cut(s) 478, 517
MscI TGGCCA 1 cut(s) 539
MslI CAYNNNNRTG 1 cut(s) 497
Msp20I TGGCCA 1 cut(s) 539
MspA1I CMGCKG 1 cut(s) 535
MspI CCGG 5 cut(s) 280, 355, 458, 479, 518
MspR9I CCNGG 4 cut(s) 281, 356, 608, 722
MvaI CCWGG 2 cut(s) 608, 722
MwoI GCNNNNNNNGC 2 cut(s) 303, 581
NciI CCSGG 2 cut(s) 281, 356
NdeII GATC 5 cut(s) 91, 183, 241, 523, 679
NlaIII CATG 4 cut(s) 43, 79, 431, 449
NlaIV GGNNCC 5 cut(s) 278, 307, 516, 525, 719
NsiI ATGCAT 1 cut(s) 429
NspI RCATGY 2 cut(s) 43, 449
PaeI GCATGC 2 cut(s) 43, 449
PcsI WCGNNNNNNNCGW 3 cut(s) 91, 229, 307
PfeI GAWTC 2 cut(s) 431, 751
PfoI TCCNGGA 2 cut(s) 354, 720
PkrI GCNGC 3 cut(s) 208, 534, 586
PleI GAGTC 1 cut(s) 124
PpsI GAGTC 1 cut(s) 124
Psp124BI GAGCTC 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 606, 720
PspFI CCCAGC 1 cut(s) 645
PspGI CCWGG 2 cut(s) 606, 720
PspN4I GGNNCC 5 cut(s) 278, 307, 516, 525, 719
PspPI GGNCC 3 cut(s) 277, 352, 455
PsuI RGATCY 1 cut(s) 523
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 1 cut(s) 56
SalI GTCGAC 1 cut(s) 487
SatI GCNGC 3 cut(s) 207, 533, 585
Sau3AI GATC 5 cut(s) 91, 183, 241, 523, 679
Sau96I GGNCC 3 cut(s) 277, 352, 455
SchI GAGTC 1 cut(s) 125
ScrFI CCNGG 4 cut(s) 281, 356, 608, 722
SduI GDGCHC 4 cut(s) 56, 102, 156, 308
SfaNI GCATC 2 cut(s) 414, 753
SinI GGWCC 2 cut(s) 277, 352
SmiMI CAYNNNNRTG 1 cut(s) 497
SphI GCATGC 2 cut(s) 43, 449
SsiI CCGC 2 cut(s) 16, 533
SstI GAGCTC 1 cut(s) 56
StyD4I CCNGG 4 cut(s) 279, 354, 606, 720
StyI CCWWGG 1 cut(s) 451
TaaI ACNGT 2 cut(s) 109, 253
TaiI ACGT 2 cut(s) 331, 488
TaqI TCGA 4 cut(s) 194, 232, 422, 488
TauI GCSGC 1 cut(s) 535
TfiI GAWTC 2 cut(s) 431, 751
TscAI CASTG 4 cut(s) 112, 256, 447, 499
TseI GCWGC 2 cut(s) 206, 584
TspDTI ATGAA 2 cut(s) 174, 407
TspRI CASTG 4 cut(s) 112, 256, 447, 499
VpaK11BI GGWCC 2 cut(s) 277, 352
XceI RCATGY 2 cut(s) 43, 449
XmiI GTMKAC 1 cut(s) 488
ZraI GACGTC 1 cut(s) 329
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.