Rh1CG085300

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000147
Physical Location & Seq
Forward (+)
17791279 .. 17791986
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG085300.1

Sequence Viewer

Length: 708 bp
ATGAGGGTACTATCTTGGAACTGTCAGGGACTTGGGTCCTCCCCGACAGGTCAAGCTTTGAAGAAGCTCTGCAGGAAGCAAAATCCTGAGATCCTGTTTCTTATGGAGACACGTCAACCAGAGGATACCATCAAGAACTGGAGAAGACATCTGAAGTTTTCAGATTACCAATCAGTTGACCCGATTCATACTGGAGGCGGGTTGGCTCTGTTTTGGAGTGATTCTGTACAGGTCACAGTCCTTGACTCGACTCCAAACTATATAGATACTACTGTGTCTTTCCTTTCTGAAGGTTTTGATTGCAAAATAACATGGATGTATGGAAATCCCCATGAAAATGAAAAGGTAGCTTTTTGGCGTTTGATGTACCAGCGTTTTGTGATTCATTCTATTCCCTGGTTAGTGATGGGGGATTTTAATGAAATTTTAGATTGTTCAGAAAAGTGGGGAGGAGACTGTCCTTCTCAATGGAGATTAAAATTGTTCCACGAGTTTGTGAGTGGAAGACAACTCCGTGATCTTCACTTCAATGGGGCAGAATTTACTTGGTTTGCCATTCGTCATGGCCGTGTTTTTATGAAAGAAAGACTTGATCGAGCATTGGGAAACTTGGCCTGGTGCTCTGATCAATCTCGCACCCAAGTTTTTCATCTACCTAAGATTGGTTCTGACCATAGACCAATCTTACTTGGACACTCATCCCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

235

Amino Acids

27.38

Weight (kDa)

8.23

Isoelectric Point (pI)

33.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 225 2e-18 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 198
AclWI GGATC 1 cut(s) 85
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 2 cut(s) 423, 539
AcuI CTGAAG 2 cut(s) 173, 309
AfaI GTAC 3 cut(s) 9, 228, 368
AfiI CCNNNNNNNGG 1 cut(s) 662
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 2 cut(s) 61, 529
AjiI CACGTC 1 cut(s) 113
AjnI CCWGG 2 cut(s) 395, 614
AluBI AGCT 3 cut(s) 56, 67, 350
AluI AGCT 3 cut(s) 56, 67, 350
Alw21I GWGCWC 1 cut(s) 623
Alw26I GTCTC 2 cut(s) 101, 447
AlwI GGATC 1 cut(s) 85
AoxI GGCC 2 cut(s) 565, 612
ApoI RAATTY 2 cut(s) 423, 539
AspS9I GGNCC 1 cut(s) 36
AvaII GGWCC 1 cut(s) 36
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BauI CACGAG 1 cut(s) 488
BbsI GAAGAC 2 cut(s) 151, 511
Bbv12I GWGCWC 1 cut(s) 623
BccI CCATC 2 cut(s) 137, 400
BceAI ACGGC 1 cut(s) 552
BciT130I CCWGG 2 cut(s) 397, 616
BciVI GTATCC 1 cut(s) 118
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 2 cut(s) 101, 447
BfmI CTRYAG 1 cut(s) 70
BfuI GTATCC 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 397, 616
Bme18I GGWCC 1 cut(s) 36
BmgBI CACGTC 1 cut(s) 113
BmgT120I GGNCC 1 cut(s) 36
BmiI GGNNCC 1 cut(s) 37
BmrFI CCNGG 2 cut(s) 397, 616
BmrI ACTGGG 1 cut(s) 697
BmuI ACTGGG 1 cut(s) 697
BoxI GACNNNNGTC 1 cut(s) 34
BpiI GAAGAC 2 cut(s) 151, 511
BpmI CTGGAG 2 cut(s) 160, 213
BsaJI CCNNGG 1 cut(s) 395
Bsc4I CCNNNNNNNGG 1 cut(s) 662
Bse1I ACTGG 3 cut(s) 143, 196, 703
BseBI CCWGG 2 cut(s) 397, 616
BseDI CCNNGG 1 cut(s) 395
BseGI GGATG 2 cut(s) 321, 698
BseLI CCNNNNNNNGG 1 cut(s) 662
BseMII CTCAG 1 cut(s) 78
BseNI ACTGG 3 cut(s) 143, 196, 703
BseRI GAGGAG 1 cut(s) 465
BshFI GGCC 2 cut(s) 567, 614
BsiHKAI GWGCWC 1 cut(s) 623
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 662
BsmAI GTCTC 2 cut(s) 101, 447
BsmFI GGGAC 1 cut(s) 42
BsnI GGCC 2 cut(s) 567, 614
Bsp1286I GDGCHC 1 cut(s) 623
Bsp1407I TGTACA 1 cut(s) 226
Bsp143I GATC 4 cut(s) 90, 517, 592, 625
BspACI CCGC 1 cut(s) 198
BspANI GGCC 2 cut(s) 567, 614
BspCNI CTCAG 1 cut(s) 79
BspLI GGNNCC 1 cut(s) 37
BspMAI CTGCAG 1 cut(s) 74
BspPI GGATC 1 cut(s) 85
BsrGI TGTACA 1 cut(s) 226
BsrI ACTGG 3 cut(s) 143, 196, 703
BssECI CCNNGG 1 cut(s) 395
BssMI GATC 4 cut(s) 90, 517, 592, 625
BssSI CACGAG 1 cut(s) 488
Bst2BI CACGAG 1 cut(s) 488
Bst2UI CCWGG 2 cut(s) 397, 616
Bst4CI ACNGT 4 cut(s) 23, 238, 274, 458
BstAUI TGTACA 1 cut(s) 226
BstDEI CTNAG 2 cut(s) 87, 657
BstF5I GGATG 2 cut(s) 321, 698
BstKTI GATC 4 cut(s) 93, 520, 595, 628
BstMAI GTCTC 2 cut(s) 101, 447
BstMBI GATC 4 cut(s) 90, 517, 592, 625
BstNI CCWGG 2 cut(s) 397, 616
BstPAI GACNNNNGTC 1 cut(s) 34
BstSCI CCNGG 2 cut(s) 395, 614
BstSFI CTRYAG 1 cut(s) 70
BstV2I GAAGAC 2 cut(s) 151, 511
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuI GTATCC 1 cut(s) 118
BsuRI GGCC 2 cut(s) 567, 614
BtrI CACGTC 1 cut(s) 113
BtsCI GGATG 2 cut(s) 321, 698
Cfr13I GGNCC 1 cut(s) 36
Csp6I GTAC 3 cut(s) 8, 227, 367
CviAII CATG 3 cut(s) 312, 332, 563
CviJI RGCY 6 cut(s) 56, 67, 206, 350, 567, 614
CviKI_1 RGCY 6 cut(s) 56, 67, 206, 350, 567, 614
CviQI GTAC 3 cut(s) 8, 227, 367
DdeI CTNAG 2 cut(s) 87, 657
DpnI GATC 4 cut(s) 92, 519, 594, 627
DpnII GATC 4 cut(s) 90, 517, 592, 625
EaeI YGGCCR 1 cut(s) 565
Eco47I GGWCC 1 cut(s) 36
Eco57I CTGAAG 2 cut(s) 173, 309
EcoO109I RGGNCCY 1 cut(s) 36
EcoRII CCWGG 2 cut(s) 395, 614
FaeI CATG 3 cut(s) 315, 335, 566
FalI AAGNNNNNCTT 2 cut(s) 573, 605
FaqI GGGAC 1 cut(s) 42
FatI CATG 3 cut(s) 311, 331, 562
FauI CCCGC 1 cut(s) 191
FbaI TGATCA 1 cut(s) 625
FokI GGATG 2 cut(s) 328, 685
GsuI CTGGAG 2 cut(s) 160, 213
HaeIII GGCC 2 cut(s) 567, 614
Hin1II CATG 3 cut(s) 315, 335, 566
HincII GTYRAC 2 cut(s) 116, 178
HindII GTYRAC 2 cut(s) 116, 178
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 5 cut(s) 184, 221, 245, 250, 382
Hpy166II GTNNAC 2 cut(s) 116, 178
Hpy188I TCNGA 6 cut(s) 153, 163, 289, 439, 625, 670
Hpy188III TCNNGA 2 cut(s) 86, 133
Hpy8I GTNNAC 2 cut(s) 116, 178
HpyAV CCTTC 2 cut(s) 284, 471
HpyCH4III ACNGT 4 cut(s) 23, 238, 274, 458
HpyCH4IV ACGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 72, 303
HpyF3I CTNAG 2 cut(s) 87, 657
HpySE526I ACGT 1 cut(s) 112
Hsp92II CATG 3 cut(s) 315, 335, 566
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 4 cut(s) 90, 517, 592, 625
MaeII ACGT 1 cut(s) 112
MaeIII GTNAC 1 cut(s) 232
MalI GATC 4 cut(s) 92, 519, 594, 627
MboI GATC 4 cut(s) 90, 517, 592, 625
MboII GAAGA 4 cut(s) 73, 156, 512, 516
MflI RGATCY 1 cut(s) 90
MhlI GDGCHC 1 cut(s) 623
MluCI AATT 3 cut(s) 423, 479, 539
MlyI GAGTC 2 cut(s) 239, 244
MnlI CCTC 4 cut(s) 49, 115, 188, 443
MseI TTAA 2 cut(s) 417, 476
MslI CAYNNNNRTG 4 cut(s) 336, 528, 567, 703
MspR9I CCNGG 2 cut(s) 397, 616
MvaI CCWGG 2 cut(s) 397, 616
NdeII GATC 4 cut(s) 90, 517, 592, 625
NlaIII CATG 3 cut(s) 315, 335, 566
NlaIV GGNNCC 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 232
PcsI WCGNNNNNNNCGW 1 cut(s) 565
PfeI GAWTC 3 cut(s) 184, 221, 382
PleI GAGTC 2 cut(s) 239, 244
PpsI GAGTC 2 cut(s) 239, 244
PpuMI RGGWCCY 1 cut(s) 36
PshAI GACNNNNGTC 1 cut(s) 34
Psp5II RGGWCCY 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 395, 614
PspGI CCWGG 2 cut(s) 395, 614
PspN4I GGNNCC 1 cut(s) 37
PspPI GGNCC 1 cut(s) 36
PspPPI RGGWCCY 1 cut(s) 36
PstI CTGCAG 1 cut(s) 74
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 3 cut(s) 9, 228, 368
RsaNI GTAC 3 cut(s) 8, 227, 367
RseI CAYNNNNRTG 4 cut(s) 336, 528, 567, 703
SaqAI TTAA 2 cut(s) 417, 476
Sau3AI GATC 4 cut(s) 90, 517, 592, 625
Sau96I GGNCC 1 cut(s) 36
SchI GAGTC 2 cut(s) 239, 244
ScrFI CCNGG 2 cut(s) 397, 616
SduI GDGCHC 1 cut(s) 623
SetI ASST 9 cut(s) 52, 58, 69, 115, 234, 295, 348, 352, 658
SfcI CTRYAG 1 cut(s) 70
SinI GGWCC 1 cut(s) 36
SmiMI CAYNNNNRTG 4 cut(s) 336, 528, 567, 703
Sse9I AATT 3 cut(s) 423, 479, 539
SsiI CCGC 1 cut(s) 198
StyD4I CCNGG 2 cut(s) 395, 614
TaaI ACNGT 4 cut(s) 23, 238, 274, 458
TaiI ACGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 248, 595
TasI AATT 3 cut(s) 423, 479, 539
TatI WGTACW 1 cut(s) 226
TfiI GAWTC 3 cut(s) 184, 221, 382
Tru1I TTAA 2 cut(s) 417, 476
Tru9I TTAA 2 cut(s) 417, 476
TseFI GTSAC 1 cut(s) 232
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 7 cut(s) 176, 348, 354, 374, 435, 593, 638
TspGWI ACGGA 1 cut(s) 503
VpaK11BI GGWCC 1 cut(s) 36
XapI RAATTY 2 cut(s) 423, 539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.