Rh2DG393500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000147
Physical Location & Seq
Forward (+)
57134584 .. 57135502
919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG393500.1

Sequence Viewer

Length: 732 bp
ATGCCCAGAGAGAGCTCCAAAGGGCGTAAATTTCTCATGCTTCCTCATAGTGATGGTGAGCCCATCACTATACCTGAGTCGTCAAAGCTGACTGCTCCTCTACCTACTAATGTGCCCGATGAAACCTTGTTGGTTTTTCCTATGATTCGAGGCCCGAATACTACGGCTGCCCAGATGTTTTTCCTTGCTAATCGACATGATGATCAGCCCACTGTTCACCCAGCCAACCTTCACGGGGATTGGGCTTTCCACGCACTCACTCGGGGCTCCCCACCCGTAAATCATAGACGTCAACCTCCTTCTTATGCTGAGGTCCGGGATAATACCTCGTTTGTTGATGTGCTTCGCAATATGAATGAGGAGTTCGGTGTGAACATTAGTTCGATGCATGATTCTCTCCCACTGCATGCCCAAGGGCCGGAGATAGTTTTACCTAATCCAGAAACTTCGACCACTGATATGCCACTTGTGGTGGCTCCGGAGGATCCCGAGCTGCTGGCCATTGTTCCTCTTCCTCCTGATGGTGTTCACAATGCTTTGGTGGCTGCTCATCCAGTTGATAATGACCAGGATGCTTTTGCTGGTGATATGGCAGCTGAGGATGGCCAGGAGGATGACGCATATTTGGATGATGATGTTGATCTTAATGAGGATGTTGATATTGAGGAGGAGGATATGGCTCCTGGATTTGAGAAATCTATTCAAATCACTGATTCTTGGCTGATGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

26.74

Weight (kDa)

4.25

Isoelectric Point (pI)

56.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 292
AccIII TCCGGA 1 cut(s) 478
AclWI GGATC 2 cut(s) 479, 492
AcoI YGGCCR 2 cut(s) 498, 604
AcsI RAATTY 1 cut(s) 29
AcyI GRCGYC 1 cut(s) 289
AfiI CCNNNNNNNGG 3 cut(s) 235, 418, 521
AgsI TTSAA 1 cut(s) 704
AjnI CCWGG 3 cut(s) 567, 606, 682
AluBI AGCT 4 cut(s) 15, 88, 493, 596
AluI AGCT 4 cut(s) 15, 88, 493, 596
Alw21I GWGCWC 1 cut(s) 17
AlwI GGATC 2 cut(s) 479, 492
Ama87I CYCGRG 2 cut(s) 261, 488
Aor13HI TCCGGA 1 cut(s) 478
AoxI GGCC 4 cut(s) 151, 416, 498, 604
ApeKI GCWGC 4 cut(s) 167, 493, 545, 593
ApoI RAATTY 1 cut(s) 29
AspS9I GGNCC 3 cut(s) 152, 313, 416
AsuC2I CCSGG 1 cut(s) 317
AsuHPI GGTGA 3 cut(s) 68, 209, 596
AvaI CYCGRG 2 cut(s) 261, 488
AvaII GGWCC 1 cut(s) 313
BaeGI GKGCMC 1 cut(s) 117
BalI TGGCCA 2 cut(s) 500, 606
BamHI GGATCC 1 cut(s) 484
BanII GRGCYC 3 cut(s) 17, 63, 269
Bbv12I GWGCWC 1 cut(s) 17
BbvCI CCTCAGC 2 cut(s) 309, 597
BbvI GCAGC 4 cut(s) 154, 480, 532, 605
BccI CCATC 4 cut(s) 47, 71, 515, 596
BceAI ACGGC 1 cut(s) 180
BciT130I CCWGG 3 cut(s) 569, 608, 684
BclI TGATCA 1 cut(s) 202
BcnI CCSGG 1 cut(s) 317
BisI GCNGC 4 cut(s) 168, 494, 546, 594
BlsI GCNGC 4 cut(s) 169, 495, 547, 595
Bme1390I CCNGG 4 cut(s) 317, 569, 608, 684
Bme18I GGWCC 1 cut(s) 313
BmeT110I CYCGRG 2 cut(s) 261, 488
BmgT120I GGNCC 3 cut(s) 152, 313, 416
BmiI GGNNCC 4 cut(s) 268, 477, 486, 681
BmrFI CCNGG 4 cut(s) 317, 569, 608, 684
BmsI GCATC 3 cut(s) 375, 562, 714
Bpu10I CCTNAGC 2 cut(s) 309, 597
BpuMI CCSGG 1 cut(s) 317
BsaBI GATNNNNATC 1 cut(s) 639
BsaHI GRCGYC 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 412
BsaWI WCCGGW 1 cut(s) 478
Bsc4I CCNNNNNNNGG 3 cut(s) 235, 418, 521
Bse1I ACTGG 1 cut(s) 554
Bse8I GATNNNNATC 1 cut(s) 639
BseAI TCCGGA 1 cut(s) 478
BseBI CCWGG 3 cut(s) 569, 608, 684
BseDI CCNNGG 1 cut(s) 412
BseGI GGATG 6 cut(s) 550, 577, 607, 619, 634, 658
BseJI GATNNNNATC 1 cut(s) 639
BseLI CCNNNNNNNGG 3 cut(s) 235, 418, 521
BseMII CTCAG 3 cut(s) 66, 300, 588
BseNI ACTGG 1 cut(s) 554
BseRI GAGGAG 4 cut(s) 87, 374, 680, 683
BseSI GKGCMC 1 cut(s) 117
BseXI GCAGC 4 cut(s) 154, 480, 532, 605
BseYI CCCAGC 1 cut(s) 220
BshFI GGCC 4 cut(s) 153, 418, 500, 606
BsiHKAI GWGCWC 1 cut(s) 17
BsiHKCI CYCGRG 2 cut(s) 261, 488
BsiSI CCGG 3 cut(s) 316, 419, 479
BslI CCNNNNNNNGG 3 cut(s) 235, 418, 521
BsnI GGCC 4 cut(s) 153, 418, 500, 606
BsoBI CYCGRG 2 cut(s) 261, 488
Bsp1286I GDGCHC 4 cut(s) 17, 63, 117, 269
Bsp13I TCCGGA 1 cut(s) 478
Bsp143I GATC 3 cut(s) 202, 484, 640
BspANI GGCC 4 cut(s) 153, 418, 500, 606
BspCNI CTCAG 3 cut(s) 67, 301, 589
BspEI TCCGGA 1 cut(s) 478
BspLI GGNNCC 4 cut(s) 268, 477, 486, 681
BspPI GGATC 2 cut(s) 479, 492
BsrI ACTGG 1 cut(s) 554
BssECI CCNNGG 1 cut(s) 412
BssMI GATC 3 cut(s) 202, 484, 640
BssNI GRCGYC 1 cut(s) 289
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 3 cut(s) 569, 608, 684
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 516
BstACI GRCGYC 1 cut(s) 289
BstC8I GCNNGC 2 cut(s) 408, 498
BstDEI CTNAG 3 cut(s) 75, 309, 597
BstF5I GGATG 6 cut(s) 550, 577, 607, 619, 634, 658
BstKTI GATC 3 cut(s) 205, 487, 643
BstMBI GATC 3 cut(s) 202, 484, 640
BstMWI GCNNNNNNNGC 2 cut(s) 251, 542
BstNI CCWGG 3 cut(s) 569, 608, 684
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 4 cut(s) 315, 567, 606, 682
BstSLI GKGCMC 1 cut(s) 117
BstV1I GCAGC 4 cut(s) 154, 480, 532, 605
BstX2I RGATCY 1 cut(s) 484
BstYI RGATCY 1 cut(s) 484
BsuRI GGCC 4 cut(s) 153, 418, 500, 606
BtsCI GGATG 6 cut(s) 550, 577, 607, 619, 634, 658
BtsI GCAGTG 1 cut(s) 401
BtsIMutI CAGTG 4 cut(s) 210, 401, 453, 708
Cac8I GCNNGC 2 cut(s) 408, 498
Cfr13I GGNCC 3 cut(s) 152, 313, 416
CseI GACGC 1 cut(s) 626
CviAII CATG 4 cut(s) 37, 197, 389, 407
DdeI CTNAG 3 cut(s) 75, 309, 597
DpnI GATC 3 cut(s) 204, 486, 642
DpnII GATC 3 cut(s) 202, 484, 640
EaeI YGGCCR 2 cut(s) 498, 604
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Ecl136II GAGCTC 1 cut(s) 15
Eco130I CCWWGG 1 cut(s) 412
Eco24I GRGCYC 3 cut(s) 17, 63, 269
Eco47I GGWCC 1 cut(s) 313
Eco53kI GAGCTC 1 cut(s) 15
Eco88I CYCGRG 2 cut(s) 261, 488
EcoICRI GAGCTC 1 cut(s) 15
EcoRII CCWGG 3 cut(s) 567, 606, 682
EcoT14I CCWWGG 1 cut(s) 412
EcoT22I ATGCAT 1 cut(s) 390
EcoT38I GRGCYC 3 cut(s) 17, 63, 269
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 4 cut(s) 40, 200, 392, 410
FatI CATG 4 cut(s) 36, 196, 388, 406
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 4 cut(s) 168, 494, 546, 594
FokI GGATG 6 cut(s) 537, 584, 614, 626, 641, 665
FriOI GRGCYC 3 cut(s) 17, 63, 269
Fsp4HI GCNGC 4 cut(s) 168, 494, 546, 594
GluI GCNGC 4 cut(s) 168, 494, 546, 594
GsaI CCCAGC 1 cut(s) 224
HaeIII GGCC 4 cut(s) 153, 418, 500, 606
HapII CCGG 3 cut(s) 316, 419, 479
HgaI GACGC 1 cut(s) 626
Hin1I GRCGYC 1 cut(s) 289
Hin1II CATG 4 cut(s) 40, 200, 392, 410
HincII GTYRAC 1 cut(s) 293
HindII GTYRAC 1 cut(s) 293
HinfI GANTC 4 cut(s) 77, 145, 392, 713
HpaII CCGG 3 cut(s) 316, 419, 479
HphI GGTGA 3 cut(s) 68, 209, 596
Hpy166II GTNNAC 4 cut(s) 217, 293, 373, 529
Hpy188III TCNNGA 4 cut(s) 440, 479, 488, 518
Hpy8I GTNNAC 4 cut(s) 217, 293, 373, 529
HpyAV CCTTC 2 cut(s) 239, 309
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 2 cut(s) 388, 406
HpyF10VI GCNNNNNNNGC 2 cut(s) 251, 542
HpyF3I CTNAG 3 cut(s) 75, 309, 597
HpySE526I ACGT 1 cut(s) 289
Hsp92I GRCGYC 1 cut(s) 289
Hsp92II CATG 4 cut(s) 40, 200, 392, 410
Kpn2I TCCGGA 1 cut(s) 478
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 202, 484, 640
LmnI GCTCC 5 cut(s) 20, 100, 272, 481, 685
Lsp1109I GCAGC 4 cut(s) 154, 480, 532, 605
LweI GCATC 3 cut(s) 375, 562, 714
MaeII ACGT 1 cut(s) 289
MalI GATC 3 cut(s) 204, 486, 642
MboI GATC 3 cut(s) 202, 484, 640
MboII GAAGA 1 cut(s) 503
MflI RGATCY 1 cut(s) 484
MhlI GDGCHC 4 cut(s) 17, 63, 117, 269
MlsI TGGCCA 2 cut(s) 500, 606
MluCI AATT 1 cut(s) 29
MluNI TGGCCA 2 cut(s) 500, 606
MlyI GAGTC 1 cut(s) 86
Mox20I TGGCCA 2 cut(s) 500, 606
Mph1103I ATGCAT 1 cut(s) 390
MroI TCCGGA 1 cut(s) 478
MscI TGGCCA 2 cut(s) 500, 606
MseI TTAA 1 cut(s) 645
MslI CAYNNNNRTG 2 cut(s) 51, 458
Msp20I TGGCCA 2 cut(s) 500, 606
MspA1I CMGCKG 1 cut(s) 596
MspI CCGG 3 cut(s) 316, 419, 479
MspR9I CCNGG 4 cut(s) 317, 569, 608, 684
MvaI CCWGG 3 cut(s) 569, 608, 684
MwoI GCNNNNNNNGC 2 cut(s) 251, 542
NciI CCSGG 1 cut(s) 317
NdeII GATC 3 cut(s) 202, 484, 640
NlaIII CATG 4 cut(s) 40, 200, 392, 410
NlaIV GGNNCC 4 cut(s) 268, 477, 486, 681
NsiI ATGCAT 1 cut(s) 390
NspI RCATGY 1 cut(s) 410
PaeI GCATGC 1 cut(s) 410
PfeI GAWTC 3 cut(s) 145, 392, 713
PfoI TCCNGGA 2 cut(s) 315, 682
PkrI GCNGC 4 cut(s) 169, 495, 547, 595
PleI GAGTC 1 cut(s) 85
PpsI GAGTC 1 cut(s) 85
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 3 cut(s) 567, 606, 682
PspFI CCCAGC 1 cut(s) 220
PspGI CCWGG 3 cut(s) 567, 606, 682
PspN4I GGNNCC 4 cut(s) 268, 477, 486, 681
PspPI GGNCC 3 cut(s) 152, 313, 416
PsuI RGATCY 1 cut(s) 484
PvuII CAGCTG 1 cut(s) 596
RseI CAYNNNNRTG 2 cut(s) 51, 458
SacI GAGCTC 1 cut(s) 17
SaqAI TTAA 1 cut(s) 645
SatI GCNGC 4 cut(s) 168, 494, 546, 594
Sau3AI GATC 3 cut(s) 202, 484, 640
Sau96I GGNCC 3 cut(s) 152, 313, 416
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 4 cut(s) 317, 569, 608, 684
SduI GDGCHC 4 cut(s) 17, 63, 117, 269
SfaNI GCATC 3 cut(s) 375, 562, 714
SinI GGWCC 1 cut(s) 313
SmiMI CAYNNNNRTG 2 cut(s) 51, 458
SphI GCATGC 1 cut(s) 410
Sse9I AATT 1 cut(s) 29
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 4 cut(s) 315, 567, 606, 682
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 292
TaqI TCGA 4 cut(s) 148, 193, 383, 449
TasI AATT 1 cut(s) 29
TfiI GAWTC 3 cut(s) 145, 392, 713
Tru1I TTAA 1 cut(s) 645
Tru9I TTAA 1 cut(s) 645
TscAI CASTG 4 cut(s) 217, 408, 460, 715
TseI GCWGC 4 cut(s) 167, 493, 545, 593
TspDTI ATGAA 2 cut(s) 135, 368
TspRI CASTG 4 cut(s) 217, 408, 460, 715
VpaK11BI GGWCC 1 cut(s) 313
XapI RAATTY 1 cut(s) 29
XceI RCATGY 1 cut(s) 410
ZraI GACGTC 1 cut(s) 290
Zsp2I ATGCAT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.