RchiOBHm_Chr5g0047471

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000147
Physical Location & Seq
Reverse (-)
43876405 .. 43877753
1349 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ32538

Sequence Viewer

Length: 357 bp
ATGAAAGTTGTAGAACTCGTCGATACGATCTCGTACATATGTGGAACGCAATATTCGGAGTTCTCCCCAGCCCTCTCCGATTTCTCTCTCTCTCGGCCTCAGACCCGCCAGGTCAGACGCGACCCGACCCGGGGATTTCTCCCCCCTCCGGCCCCGGACCCGAGCTCCCCCGTGATCGCCACTCCACGCCCAGCCTCAACCCGGTGTCTTCCTGAGCAGCCGCCGCCCTCAGGTGGAGATCGAAGCCACCCAGGCGGAGCAAATCGGACCCGACCGGATCCTGGCCGTGTCGGTGTTTCACGGGCCGATCCTTCCGACTTTTGTGATCTAGTCTTCCCCCTGATCATCCCCATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.74

Weight (kDa)

7.74

Isoelectric Point (pI)

62.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 120
AciI CCGC 4 cut(s) 106, 221, 224, 255
AclWI GGATC 3 cut(s) 272, 285, 302
AcoI YGGCCR 1 cut(s) 283
AfaI GTAC 1 cut(s) 35
AfiI CCNNNNNNNGG 7 cut(s) 130, 131, 148, 201, 230, 233, 281
AjnI CCWGG 3 cut(s) 108, 250, 280
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Alw21I GWGCWC 1 cut(s) 167
AlwI GGATC 3 cut(s) 272, 285, 302
Ama87I CYCGRG 2 cut(s) 129, 160
AoxI GGCC 4 cut(s) 95, 150, 283, 303
ApeKI GCWGC 1 cut(s) 217
AspS9I GGNCC 4 cut(s) 151, 157, 267, 303
AsuC2I CCSGG 4 cut(s) 130, 131, 155, 202
AvaI CYCGRG 2 cut(s) 129, 160
AvaII GGWCC 2 cut(s) 157, 267
AxyI CCTNAGG 1 cut(s) 229
BamHI GGATCC 1 cut(s) 277
BanII GRGCYC 1 cut(s) 167
BbsI GAAGAC 2 cut(s) 200, 325
Bbv12I GWGCWC 1 cut(s) 167
BbvI GCAGC 1 cut(s) 229
BceAI ACGGC 1 cut(s) 270
BciT130I CCWGG 3 cut(s) 110, 252, 282
BclI TGATCA 1 cut(s) 342
BcnI CCSGG 4 cut(s) 130, 131, 155, 202
BfaI CTAG 1 cut(s) 329
BglI GCCNNNNNGGC 1 cut(s) 252
BisI GCNGC 3 cut(s) 218, 221, 224
BlsI GCNGC 3 cut(s) 219, 222, 225
Bme1390I CCNGG 7 cut(s) 110, 130, 131, 155, 202, 252, 282
Bme18I GGWCC 2 cut(s) 157, 267
BmeT110I CYCGRG 2 cut(s) 129, 160
BmgT120I GGNCC 4 cut(s) 151, 157, 267, 303
BmiI GGNNCC 4 cut(s) 153, 159, 269, 279
BmrFI CCNGG 7 cut(s) 110, 130, 131, 155, 202, 252, 282
BpiI GAAGAC 2 cut(s) 200, 325
Bpu10I CCTNAGC 1 cut(s) 213
BpuMI CCSGG 4 cut(s) 130, 131, 155, 202
BsaJI CCNNGG 4 cut(s) 129, 130, 153, 250
BsaWI WCCGGW 1 cut(s) 274
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 7 cut(s) 130, 131, 148, 201, 230, 233, 281
Bse21I CCTNAGG 1 cut(s) 229
BseBI CCWGG 3 cut(s) 110, 252, 282
BseDI CCNNGG 4 cut(s) 129, 130, 153, 250
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 7 cut(s) 130, 131, 148, 201, 230, 233, 281
BseMII CTCAG 3 cut(s) 113, 204, 243
BseXI GCAGC 1 cut(s) 229
BseYI CCCAGC 2 cut(s) 67, 190
Bsh1236I CGCG 1 cut(s) 120
Bsh1285I CGRYCG 1 cut(s) 275
BshFI GGCC 4 cut(s) 97, 152, 285, 305
BsiEI CGRYCG 1 cut(s) 275
BsiHKAI GWGCWC 1 cut(s) 167
BsiHKCI CYCGRG 2 cut(s) 129, 160
BsiSI CCGG 5 cut(s) 130, 149, 155, 202, 275
BslI CCNNNNNNNGG 7 cut(s) 130, 131, 148, 201, 230, 233, 281
BsnI GGCC 4 cut(s) 97, 152, 285, 305
BsoBI CYCGRG 2 cut(s) 129, 160
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 7 cut(s) 27, 174, 238, 277, 307, 325, 342
BspACI CCGC 4 cut(s) 106, 221, 224, 255
BspANI GGCC 4 cut(s) 97, 152, 285, 305
BspCNI CTCAG 3 cut(s) 112, 205, 242
BspFNI CGCG 1 cut(s) 120
BspLI GGNNCC 4 cut(s) 153, 159, 269, 279
BspPI GGATC 3 cut(s) 272, 285, 302
BssECI CCNNGG 4 cut(s) 129, 130, 153, 250
BssMI GATC 7 cut(s) 27, 174, 238, 277, 307, 325, 342
Bst2UI CCWGG 3 cut(s) 110, 252, 282
BstDEI CTNAG 3 cut(s) 99, 213, 229
BstF5I GGATG 1 cut(s) 345
BstFNI CGCG 1 cut(s) 120
BstKTI GATC 7 cut(s) 30, 177, 241, 280, 310, 328, 345
BstMBI GATC 7 cut(s) 27, 174, 238, 277, 307, 325, 342
BstMCI CGRYCG 1 cut(s) 275
BstMWI GCNNNNNNNGC 2 cut(s) 223, 252
BstNI CCWGG 3 cut(s) 110, 252, 282
BstSCI CCNGG 7 cut(s) 108, 128, 129, 153, 200, 250, 280
BstUI CGCG 1 cut(s) 120
BstV1I GCAGC 1 cut(s) 229
BstV2I GAAGAC 2 cut(s) 200, 325
BstX2I RGATCY 1 cut(s) 277
BstYI RGATCY 1 cut(s) 277
Bsu36I CCTNAGG 1 cut(s) 229
BsuRI GGCC 4 cut(s) 97, 152, 285, 305
BtsCI GGATG 1 cut(s) 345
Cfr13I GGNCC 4 cut(s) 151, 157, 267, 303
Cfr9I CCCGGG 1 cut(s) 129
CseI GACGC 1 cut(s) 126
Csp6I GTAC 1 cut(s) 34
CviJI RGCY 9 cut(s) 71, 97, 152, 165, 194, 220, 246, 285, 305
CviKI_1 RGCY 9 cut(s) 71, 97, 152, 165, 194, 220, 246, 285, 305
CviQI GTAC 1 cut(s) 34
DdeI CTNAG 3 cut(s) 99, 213, 229
DpnI GATC 7 cut(s) 29, 176, 240, 279, 309, 327, 344
DpnII GATC 7 cut(s) 27, 174, 238, 277, 307, 325, 342
EaeI YGGCCR 1 cut(s) 283
EciI GGCGGA 1 cut(s) 270
Ecl136II GAGCTC 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 167
Eco47I GGWCC 2 cut(s) 157, 267
Eco53kI GAGCTC 1 cut(s) 165
Eco81I CCTNAGG 1 cut(s) 229
Eco88I CYCGRG 2 cut(s) 129, 160
EcoICRI GAGCTC 1 cut(s) 165
EcoRII CCWGG 3 cut(s) 108, 250, 280
EcoT38I GRGCYC 1 cut(s) 167
FaiI YATR 4 cut(s) 38, 40, 353, 355
FauI CCCGC 1 cut(s) 113
FauNDI CATATG 1 cut(s) 38
FbaI TGATCA 1 cut(s) 342
Fnu4HI GCNGC 3 cut(s) 218, 221, 224
FokI GGATG 1 cut(s) 332
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 3 cut(s) 218, 221, 224
FspBI CTAG 1 cut(s) 329
GluI GCNGC 3 cut(s) 218, 221, 224
GsaI CCCAGC 2 cut(s) 71, 194
HaeIII GGCC 4 cut(s) 97, 152, 285, 305
HapII CCGG 5 cut(s) 130, 149, 155, 202, 275
HgaI GACGC 1 cut(s) 126
HpaII CCGG 5 cut(s) 130, 149, 155, 202, 275
Hpy188I TCNGA 6 cut(s) 58, 79, 102, 116, 267, 316
Hpy188III TCNNGA 1 cut(s) 212
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 1 cut(s) 321
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 252
HpyF3I CTNAG 3 cut(s) 99, 213, 229
Ksp22I TGATCA 1 cut(s) 342
Kzo9I GATC 7 cut(s) 27, 174, 238, 277, 307, 325, 342
LmnI GCTCC 2 cut(s) 170, 257
Lsp1109I GCAGC 1 cut(s) 229
MaeI CTAG 1 cut(s) 329
MalI GATC 7 cut(s) 29, 176, 240, 279, 309, 327, 344
MboI GATC 7 cut(s) 27, 174, 238, 277, 307, 325, 342
MboII GAAGA 2 cut(s) 200, 325
MflI RGATCY 1 cut(s) 277
MhlI GDGCHC 1 cut(s) 167
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 5 cut(s) 83, 108, 156, 205, 238
MspI CCGG 5 cut(s) 130, 149, 155, 202, 275
MspR9I CCNGG 7 cut(s) 110, 130, 131, 155, 202, 252, 282
MvaI CCWGG 3 cut(s) 110, 252, 282
MvnI CGCG 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 223, 252
NciI CCSGG 4 cut(s) 130, 131, 155, 202
NdeI CATATG 1 cut(s) 38
NdeII GATC 7 cut(s) 27, 174, 238, 277, 307, 325, 342
NlaIV GGNNCC 4 cut(s) 153, 159, 269, 279
NmeAIII GCCGAG 1 cut(s) 73
PkrI GCNGC 3 cut(s) 219, 222, 225
Psp124BI GAGCTC 1 cut(s) 167
Psp6I CCWGG 3 cut(s) 108, 250, 280
PspFI CCCAGC 2 cut(s) 67, 190
PspGI CCWGG 3 cut(s) 108, 250, 280
PspN4I GGNNCC 4 cut(s) 153, 159, 269, 279
PspPI GGNCC 4 cut(s) 151, 157, 267, 303
PsuI RGATCY 1 cut(s) 277
RsaI GTAC 1 cut(s) 35
RsaNI GTAC 1 cut(s) 34
SacI GAGCTC 1 cut(s) 167
SatI GCNGC 3 cut(s) 218, 221, 224
Sau3AI GATC 7 cut(s) 27, 174, 238, 277, 307, 325, 342
Sau96I GGNCC 4 cut(s) 151, 157, 267, 303
ScrFI CCNGG 7 cut(s) 110, 130, 131, 155, 202, 252, 282
SduI GDGCHC 1 cut(s) 167
SetI ASST 3 cut(s) 114, 167, 235
SinI GGWCC 2 cut(s) 157, 267
SmaI CCCGGG 1 cut(s) 131
SsiI CCGC 4 cut(s) 106, 221, 224, 255
SspI AATATT 1 cut(s) 53
SspMI CTAG 1 cut(s) 329
SstI GAGCTC 1 cut(s) 167
StyD4I CCNGG 7 cut(s) 108, 128, 129, 153, 200, 250, 280
TaqI TCGA 2 cut(s) 21, 241
TauI GCSGC 2 cut(s) 223, 226
TseI GCWGC 1 cut(s) 217
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 129
VpaK11BI GGWCC 2 cut(s) 157, 267
XmaI CCCGGG 1 cut(s) 129
XspI CTAG 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.