RchiOBHm_Chr1g0364721

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000147
Physical Location & Seq
Forward (+)
55781111 .. 55782206
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58940

Sequence Viewer

Length: 588 bp
ATGAATTACATTTCCTGGAACTGTCAAGGCTTGGGGAAGCCATTGACAGTACAAACCTTAAGGGAGGTTACCCGCTCCCACAGCCCAGCTTTTGTTTTTCTCTCTGAAACACATCAGAGTTATCATTTTGTAGATAAAGTTAGAAGGCAGTTTGGTTACAGTAAAGGATTTAATGTCGAACCCATTGAAACAGCTGGCGGTCTAAGTCTTTGGTGGAAACCTGAATTTTCCGTGAGTATCTTGGATTACTCAATGCATTTCGTTGATACTGTGGTAACCAAGACTGGCTCATCACGCTTCAGGATCACTTGGCTTTATGGTCCACCCTATTTTGCTGATAAGGAAAAGTTTTGGGATTCCTGGAATAGTAAAAATTGGAATGATGGGACGCCCTGGTTGGTAATTGGTGATTTGAATGAATTGATAAGCCAACATGAGAAAGAAGGAAGAGCTACTTGGGGTCTCAATAGAAAGCATTTTTTGAGATGCTTCCAGAACACAAATAAGTTGATCGATATTCCAAGGGCAGAATTTCACTTGGGCAAGGAAGGTGGATGGTGTAATTGTGCTGCAAGAAAGATTGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exo_endo_phos Exo_endo_phos_2

Protein Analysis

195

Amino Acids

22.67

Weight (kDa)

9.05

Isoelectric Point (pI)

28.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exo_endo_phos PF03372 4 - 140 7.4e-08 Endonuclease/Exonuclease/phosphatase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000147)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g10354 FvH4_1g17131 FvH4_2g11611 FvH4_2g33851 FvH4_3g32112 FvH4_3g35052 FvH4_3g44611 FvH4_4g05921 FvH4_4g06411 FvH4_4g06792 FvH4_4g10365 FvH4_4g21422 FvH4_4g22401 FvH4_4g30261 FvH4_5g08843 FvH4_5g14731 FvH4_5g24781 FvH4_5g26231 FvH4_5g31282 FvH4_6g23371 FvH4_6g38511 FvH4_7g01171 FvH4_7g03341 FvH4_7g06171 FvH4_7g32472
prunus_persica Prupe.2G036900_v2.0.a1
pyrus_communis pycom02g19900 pycom03g01520 pycom05g10510 pycom16g23820
rosa_chinensis RchiOBHm_Chr1g0316031 RchiOBHm_Chr1g0342451 RchiOBHm_Chr1g0344541 RchiOBHm_Chr1g0364721 RchiOBHm_Chr2g0133541 RchiOBHm_Chr2g0134511 RchiOBHm_Chr2g0145891 RchiOBHm_Chr2g0163241 RchiOBHm_Chr5g0027201 RchiOBHm_Chr5g0027881 RchiOBHm_Chr5g0047471 RchiOBHm_Chr7g0210901
rosa_laevigata RLG00000011116 RLG00000017964 RLG00000018128 RLG00000018387 RLG00000018829 RLG00000019353 RLG00000028973 RLG00000035870 RLG00000036629
rosa_multiflora Rmu_co8126340.1_g000001 Rmu_co8216750.1_g000001 Rmu_co8222072.1_g000001 Rmu_co8332453.1_g000001 Rmu_co8349913.1_g000001 Rmu_co8405337.1_g000001 Rmu_sc0000041.1_g000012 Rmu_sc0000166.1_g000029 Rmu_sc0000251.1_g000019 Rmu_sc0000271.1_g000028 Rmu_sc0000509.1_g000036 Rmu_sc0000543.1_g000048 Rmu_sc0000808.1_g000003 Rmu_sc0000847.1_g000040 Rmu_sc0000972.1_g000020 Rmu_sc0001260.1_g000001 Rmu_sc0001464.1_g000026 Rmu_sc0001616.1_g000003 Rmu_sc0001669.1_g000001 Rmu_sc0002005.1_g000001 Rmu_sc0002014.1_g000010 Rmu_sc0002082.1_g000033 Rmu_sc0002302.1_g000024 Rmu_sc0002531.1_g000045 Rmu_sc0003276.1_g000002 Rmu_sc0003737.1_g000007 Rmu_sc0003832.1_g000022 Rmu_sc0004080.1_g000011 Rmu_sc0004487.1_g000009 Rmu_sc0004988.1_g000018 Rmu_sc0004988.1_g000019 Rmu_sc0005254.1_g000002 Rmu_sc0005733.1_g000004 Rmu_sc0006413.1_g000006 Rmu_sc0007121.1_g000013 Rmu_sc0007869.1_g000006 Rmu_sc0008035.1_g000015 Rmu_sc0008279.1_g000017 Rmu_sc0008351.1_g000014 Rmu_sc0008957.1_g000007 Rmu_sc0009012.1_g000007 Rmu_sc0010556.1_g000009 Rmu_sc0012889.1_g000003 Rmu_sc0019808.1_g000004 Rmu_sc0028113.1_g000001 Rmu_sc0031202.1_g000001 Rmu_sc0034436.1_g000001 Rmu_sc0034445.1_g000001 Rmu_sc0040044.1_g000001 Rmu_ssc0000062.1_g000032 Rmu_ssc0000372.1_g000018
rosa_roxburghii Rroxscaffold_1G00001520 Rroxscaffold_1G00039990 Rroxscaffold_1G00046370 Rroxscaffold_2G00110140 Rroxscaffold_2G00131420 Rroxscaffold_3G00222390 Rroxscaffold_5G00336040 Rroxscaffold_5G00338000 Rroxscaffold_5G00344030 Rroxscaffold_5G00363460 Rroxscaffold_6G00402000 Rroxscaffold_7G00194940
rosa_rugosa Rorug01G0106500 Rorug01G0111300 Rorug01G0247000 Rorug02G0318100.1 Rorug02G0318200 Rorug02G0459500 Rorug03G0108100 Rorug03G0200500 Rorug03G0232500 Rorug03G0240600 Rorug04G0105300 Rorug04G0256600 Rorug06G0079300 Rorug06G0082700 Rorug06G0095600 Rorug06G0179000 Rorug07G0113500 Rorug07G0271100
rosa_samantha Rh1AG087200 Rh1CG085300 Rh1DG013200 Rh1DG091700 Rh1DG091800 Rh1DG338300 Rh2AG375400 Rh2AG407000 Rh2AG513500 Rh2BG277700 Rh2BG371200 Rh2BG376100 Rh2BG580500 Rh2CG354300 Rh2DG200100 Rh2DG388000 Rh2DG393500 Rh2DG426400 Rh3CG304800 Rh4AG044600 Rh4AG220500 Rh4BG379300 Rh4CG007100 Rh4CG030300 Rh4CG038000 Rh4CG114900 Rh4CG393700 Rh5AG124900 Rh5AG342300 Rh5BG414400 Rh5CG263800 Rh5CG439000 Rh5DG231100 Rh5DG566900 Rh6AG138600 Rh6AG200000 Rh6AG253100 Rh6AG390900 Rh6AG441600 Rh6BG194700 Rh6BG225800 Rh6BG256100 Rh6CG231700 Rh6CG231900 Rh6CG312200 Rh6CG453700 Rh6DG219400 Rh7AG357700 Rh7AG442000 Rh7CG425700 Rh7CG474600 Rh7CG494100 Rh7DG253900 Rh7DG294700 Rh7DG401600 Rh7DG461300
rosa_wichuraiana Rw1G001190 Rw2G047020 Rw4G003490 Rw5G039690 Rw6G010450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 75
AciI CCGC 2 cut(s) 73, 198
AclWI GGATC 1 cut(s) 311
AcsI RAATTY 2 cut(s) 224, 530
AcuI CTGAAG 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 389
AfaI GTAC 1 cut(s) 51
AflII CTTAAG 1 cut(s) 58
AgsI TTSAA 2 cut(s) 188, 415
AjnI CCWGG 3 cut(s) 14, 359, 392
AjuI GAANNNNNNNTTGG 2 cut(s) 439, 471
AluBI AGCT 3 cut(s) 89, 194, 452
AluI AGCT 3 cut(s) 89, 194, 452
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 2 cut(s) 224, 530
AspS9I GGNCC 1 cut(s) 320
AsuHPI GGTGA 1 cut(s) 419
AvaII GGWCC 1 cut(s) 320
BaeI ACNNNNGTAYC 2 cut(s) 258, 291
BbvI GCAGC 1 cut(s) 556
BccI CCATC 2 cut(s) 377, 549
BciT130I CCWGG 3 cut(s) 16, 361, 394
BcoDI GTCTC 1 cut(s) 467
BfrI CTTAAG 1 cut(s) 58
BisI GCNGC 1 cut(s) 570
BlsI GCNGC 1 cut(s) 571
Bme1390I CCNGG 3 cut(s) 16, 361, 394
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmrFI CCNGG 3 cut(s) 16, 361, 394
BmsI GCATC 1 cut(s) 476
Bsa29I ATCGAT 1 cut(s) 513
BsaHI GRCGYC 1 cut(s) 389
BsaI GGTCTC 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 392, 521
Bse1I ACTGG 1 cut(s) 289
BseBI CCWGG 3 cut(s) 16, 361, 394
BseCI ATCGAT 1 cut(s) 513
BseDI CCNNGG 2 cut(s) 392, 521
BseGI GGATG 1 cut(s) 560
BseNI ACTGG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 556
BseYI CCCAGC 1 cut(s) 85
BshVI ATCGAT 1 cut(s) 513
BslFI GGGAC 1 cut(s) 400
BsmAI GTCTC 1 cut(s) 467
BsmFI GGGAC 1 cut(s) 400
Bso31I GGTCTC 1 cut(s) 467
Bsp143I GATC 2 cut(s) 303, 510
BspACI CCGC 2 cut(s) 73, 198
BspDI ATCGAT 1 cut(s) 513
BspPI GGATC 1 cut(s) 311
BspQI GCTCTTC 1 cut(s) 442
BspTI CTTAAG 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 467
BsrBI CCGCTC 1 cut(s) 75
BsrI ACTGG 1 cut(s) 289
BssECI CCNNGG 2 cut(s) 392, 521
BssMI GATC 2 cut(s) 303, 510
BssNI GRCGYC 1 cut(s) 389
BssT1I CCWWGG 1 cut(s) 521
Bst2UI CCWGG 3 cut(s) 16, 361, 394
Bst4CI ACNGT 4 cut(s) 23, 49, 161, 271
Bst6I CTCTTC 1 cut(s) 442
BstACI GRCGYC 1 cut(s) 389
BstAFI CTTAAG 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 196
BstDEI CTNAG 1 cut(s) 203
BstEII GGTNACC 2 cut(s) 67, 274
BstF5I GGATG 1 cut(s) 560
BstKTI GATC 2 cut(s) 306, 513
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 2 cut(s) 303, 510
BstMWI GCNNNNNNNGC 2 cut(s) 81, 294
BstNI CCWGG 3 cut(s) 16, 361, 394
BstPI GGTNACC 2 cut(s) 67, 274
BstSCI CCNGG 3 cut(s) 14, 359, 392
BstV1I GCAGC 1 cut(s) 556
Bsu15I ATCGAT 1 cut(s) 513
BsuTUI ATCGAT 1 cut(s) 513
BtsCI GGATG 1 cut(s) 560
Cac8I GCNNGC 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 320
ClaI ATCGAT 1 cut(s) 513
CseI GACGC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 50
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 1 cut(s) 434
CviJI RGCY 9 cut(s) 30, 40, 84, 89, 194, 288, 313, 429, 452
CviKI_1 RGCY 9 cut(s) 30, 40, 84, 89, 194, 288, 313, 429, 452
CviQI GTAC 1 cut(s) 50
DdeI CTNAG 1 cut(s) 203
DpnI GATC 2 cut(s) 305, 512
DpnII GATC 2 cut(s) 303, 510
Eam1104I CTCTTC 1 cut(s) 442
EarI CTCTTC 1 cut(s) 442
Eco130I CCWWGG 1 cut(s) 521
Eco31I GGTCTC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 320
Eco57I CTGAAG 1 cut(s) 283
Eco91I GGTNACC 2 cut(s) 67, 274
EcoO65I GGTNACC 2 cut(s) 67, 274
EcoRII CCWGG 3 cut(s) 14, 359, 392
EcoT14I CCWWGG 1 cut(s) 521
EcoT22I ATGCAT 1 cut(s) 258
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 1 cut(s) 437
FaiI YATR 2 cut(s) 318, 435
FalI AAGNNNNNCTT 2 cut(s) 439, 471
FaqI GGGAC 1 cut(s) 400
FatI CATG 1 cut(s) 433
FauI CCCGC 1 cut(s) 80
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 1 cut(s) 567
Fsp4HI GCNGC 1 cut(s) 570
GluI GCNGC 1 cut(s) 570
GsaI CCCAGC 1 cut(s) 89
HgaI GACGC 1 cut(s) 397
Hin1I GRCGYC 1 cut(s) 389
Hin1II CATG 1 cut(s) 437
HinfI GANTC 1 cut(s) 356
HphI GGTGA 1 cut(s) 419
Hpy166II GTNNAC 1 cut(s) 323
Hpy188I TCNGA 2 cut(s) 106, 117
Hpy188III TCNNGA 2 cut(s) 301, 493
Hpy8I GTNNAC 1 cut(s) 323
HpyAV CCTTC 3 cut(s) 138, 437, 542
HpyCH4III ACNGT 4 cut(s) 23, 49, 161, 271
HpyCH4V TGCA 2 cut(s) 256, 572
HpyF10VI GCNNNNNNNGC 2 cut(s) 81, 294
HpyF3I CTNAG 1 cut(s) 203
Hsp92I GRCGYC 1 cut(s) 389
Hsp92II CATG 1 cut(s) 437
Kzo9I GATC 2 cut(s) 303, 510
LguI GCTCTTC 1 cut(s) 442
LmnI GCTCC 1 cut(s) 80
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 1 cut(s) 476
MaeIII GTNAC 3 cut(s) 67, 155, 274
MalI GATC 2 cut(s) 305, 512
MbiI CCGCTC 1 cut(s) 75
MboI GATC 2 cut(s) 303, 510
MboII GAAGA 1 cut(s) 459
MluCI AATT 7 cut(s) 4, 224, 373, 402, 419, 530, 562
MnlI CCTC 1 cut(s) 58
Mph1103I ATGCAT 1 cut(s) 258
MseI TTAA 2 cut(s) 59, 171
MspA1I CMGCKG 1 cut(s) 194
MspCI CTTAAG 1 cut(s) 58
MspR9I CCNGG 3 cut(s) 16, 361, 394
MvaI CCWGG 3 cut(s) 16, 361, 394
MwoI GCNNNNNNNGC 2 cut(s) 81, 294
NdeII GATC 2 cut(s) 303, 510
NlaIII CATG 1 cut(s) 437
NsiI ATGCAT 1 cut(s) 258
PciSI GCTCTTC 1 cut(s) 442
PfeI GAWTC 1 cut(s) 356
PfoI TCCNGGA 2 cut(s) 14, 359
PkrI GCNGC 1 cut(s) 571
Psp6I CCWGG 3 cut(s) 14, 359, 392
PspEI GGTNACC 2 cut(s) 67, 274
PspFI CCCAGC 1 cut(s) 85
PspGI CCWGG 3 cut(s) 14, 359, 392
PspPI GGNCC 1 cut(s) 320
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 51
RsaNI GTAC 1 cut(s) 50
SapI GCTCTTC 1 cut(s) 442
SaqAI TTAA 2 cut(s) 59, 171
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 2 cut(s) 303, 510
Sau96I GGNCC 1 cut(s) 320
ScrFI CCNGG 3 cut(s) 16, 361, 394
SetI ASST 7 cut(s) 59, 69, 91, 196, 223, 454, 553
SfaNI GCATC 1 cut(s) 476
SinI GGWCC 1 cut(s) 320
SmlI CTYRAG 1 cut(s) 58
SmoI CTYRAG 1 cut(s) 58
Sse9I AATT 7 cut(s) 4, 224, 373, 402, 419, 530, 562
SsiI CCGC 2 cut(s) 73, 198
StyD4I CCNGG 3 cut(s) 14, 359, 392
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 4 cut(s) 23, 49, 161, 271
TaqI TCGA 2 cut(s) 177, 513
TasI AATT 7 cut(s) 4, 224, 373, 402, 419, 530, 562
TatI WGTACW 1 cut(s) 49
TfiI GAWTC 1 cut(s) 356
Tru1I TTAA 2 cut(s) 59, 171
Tru9I TTAA 2 cut(s) 59, 171
TseI GCWGC 1 cut(s) 569
TspDTI ATGAA 2 cut(s) 17, 432
TspGWI ACGGA 1 cut(s) 220
Vha464I CTTAAG 1 cut(s) 58
VpaK11BI GGWCC 1 cut(s) 320
XapI RAATTY 2 cut(s) 224, 530
Zsp2I ATGCAT 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.